Ggra2212.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2212.t1
Unique NameGgra2212.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length530
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:663270..664859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7370.XP_005186618.1
Preferred nameDYNC1I2
PFAMsDynein_IC2,WD40
Max annot lvl33208|Metazoa
KEGG koko:K10415
KEGG Pathwayko04145,ko04962,ko05132,map04145,map04962,map05132
GOsGO:0000003,GO:0000086,GO:0000226,GO:0000278,GO:0000775,GO:0000776,GO:0000922,GO:0001654,GO:0001754,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003006,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005768,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005868,GO:0005874,GO:0005875,GO:0005929,GO:0006810,GO:0006888,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007051,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007346,GO:0007349,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0008017,GO:0008088,GO:0008092,GO:0008104,GO:0008150,GO:0009653,GO:0009719,GO:0009887,GO:0009987,GO:0010033,GO:0010389,GO:0010564,GO:0010721,GO:0010970,GO:0010975,GO:0010977,GO:0012505,GO:0015630,GO:0015631,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019882,GO:0019884,GO:0019886,GO:0019953,GO:0022008,GO:0022402,GO:0022406,GO:0022412,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030286,GO:0030424,GO:0030426,GO:0030427,GO:0030507,GO:0030705,GO:0031344,GO:0031345,GO:0031410,GO:0031514,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032781,GO:0032838,GO:0032991,GO:0033036,GO:0033267,GO:0033365,GO:0034452,GO:0034501,GO:0034502,GO:0034613,GO:0035770,GO:0036126,GO:0036464,GO:0036477,GO:0042221,GO:0042995,GO:0043005,GO:0043025,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043462,GO:0044085,GO:0044093,GO:0044297,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0044877,GO:0045503,GO:0045504,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046530,GO:0046907,GO:0047496,GO:0048002,GO:0048193,GO:0048232,GO:0048468,GO:0048471,GO:0048513,GO:0048515,GO:0048519,GO:0048523,GO:0048592,GO:0048609,GO:0048646,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051642,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0051960,GO:0051961,GO:0055037,GO:0060271,GO:0060284,GO:0060322,GO:0061842,GO:0065007,GO:0065009,GO:0070727,GO:0070848,GO:0070887,GO:0070925,GO:0071310,GO:0071363,GO:0071459,GO:0071495,GO:0071840,GO:0072384,GO:0090596,GO:0097223,GO:0097458,GO:0097708,GO:0097711,GO:0097729,GO:0098687,GO:0099080,GO:0099081,GO:0099111,GO:0099512,GO:0099513,GO:0099518,GO:0099568,GO:0120025,GO:0120031,GO:0120035,GO:0120036,GO:0120038,GO:0120111,GO:0140056,GO:0150034,GO:1901987,GO:1901990,GO:1902494,GO:1902749,GO:1903047,GO:1904115,GO:1990089,GO:1990090,GO:1990904,GO:2000026,GO:2000574,GO:2000576,GO:2000580,GO:2000582
Evalue9.76e-27
EggNOG OGsKOG1587@1|root,KOG1587@2759|Eukaryota,38GZ7@33154|Opisthokonta,3BBQC@33208|Metazoa,3CRJY@33213|Bilateria,41WGF@6656|Arthropoda,3SHF9@50557|Insecta,44XYF@7147|Diptera
DescriptionIt is involved in the biological process described with microtubule-based movement
COG categoryZ
BRITEko00000,ko00001,ko03036,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2212Ggra2212Gracilaria gracilis GNS1m malegenetig00000900_pilon 663270..664859 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2212.t1.stop1Ggra2212.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 663270..663272 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2212.t1.CDS1Ggra2212.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 663270..664859 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2212.t1.exon1Ggra2212.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 663270..664859 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2212.t1.start1Ggra2212.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 664857..664859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2212.t1Ggra2212.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 663270..664859 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2212.t1 ID=Ggra2212.t1|Name=Ggra2212.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=530bp
MDQRFNIEERRRRLQQQKETLIGLQSYQKRGTQSAKQKNHGRSSYSTNQG
RSSTDRSSFSRAFKAELNLPPSNENSQNDITVPASMGANVRKRTYLPELM
GDASFSSKFGLIPSEEGEQEKITDSLHSGSQRASNGSPLRFQVTLKDKLT
DARPVTGIKFHKKFDDIIVTSHGSRSDQCLRSEPGLNAIWCLDEGRNTLQ
RTLTANAAMSALELPSISPTLVVGGTVSGSVLFWDTRLKSSLPIHALEGD
TAFVAGFHDRQQITALRTTAESSPYFVSTSIGGHVCKWTLSKPDVPLTKD
TLRENGTAAELNISSFDFPRTARLAGGEKTTANKFTSLFVGDDSGGIHRA
DGNDASWTVETASGDTHDGVVTALSAHPSGHRVAYLDDIVLSASADWTIK
LWYFHKSQHPVCIDTYDMVEYGRINDVAWSNQHPTVFCTGSEAGYLSLFD
ISHHLSPSSGRNYWHFETPATDGNTQITNIQWDPISRHVCAGSSKGTLSL
WQCTSDFASLPDAEWTGQYLKSKQSTEVR*
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spliced messenger RNA

>Ggra2212.t1 ID=Ggra2212.t1|Name=Ggra2212.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1590bp|location=Sequence derived from alignment at tig00000900_pilon:663270..664859- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCAACGCTTTAATATAGAAGAAAGGCGACGAAGGCTTCAACAACA
GAAGGAGACCCTTATTGGTTTGCAGTCATATCAGAAAAGGGGAACCCAGT
CCGCTAAGCAGAAGAACCATGGACGTTCTTCTTACTCGACGAATCAGGGT
CGGAGTTCAACTGATCGCAGCTCTTTCTCACGCGCCTTCAAGGCGGAACT
GAATCTCCCTCCTTCCAATGAGAATTCTCAGAATGATATCACAGTTCCAG
CCTCAATGGGAGCTAATGTCAGAAAACGAACATATCTGCCAGAGCTTATG
GGTGACGCAAGCTTTTCTTCCAAGTTTGGTCTTATTCCCTCAGAGGAAGG
AGAGCAAGAGAAGATAACAGACAGTTTACATTCCGGGTCCCAACGCGCTT
CAAACGGATCTCCGCTGCGGTTTCAAGTTACTCTCAAAGATAAGTTAACA
GATGCCCGGCCGGTTACTGGGATAAAGTTCCACAAGAAATTCGATGATAT
TATTGTTACATCCCACGGCTCTCGTTCTGATCAGTGCTTGCGTTCAGAAC
CTGGACTGAACGCAATATGGTGTTTAGATGAAGGTCGGAATACCTTGCAG
AGAACTCTAACAGCCAACGCTGCCATGTCAGCTTTGGAACTTCCGAGTAT
ATCCCCGACACTAGTTGTTGGCGGAACCGTCTCTGGCAGCGTACTCTTTT
GGGACACTCGCTTGAAGTCTTCCTTGCCAATTCATGCCCTGGAGGGTGAC
ACAGCATTCGTAGCTGGTTTTCACGACAGGCAGCAGATTACTGCACTAAG
GACTACAGCAGAGTCTTCTCCATATTTCGTTTCAACGAGCATTGGTGGCC
ATGTTTGCAAGTGGACGCTTTCAAAGCCGGATGTGCCACTTACCAAGGAC
ACACTGCGGGAGAATGGAACAGCAGCCGAACTGAACATTTCTAGCTTCGA
TTTTCCGCGCACGGCGAGACTTGCTGGGGGTGAGAAGACGACGGCAAATA
AGTTCACATCTCTATTTGTCGGAGACGACTCGGGAGGAATTCATCGGGCA
GATGGTAATGATGCTTCGTGGACTGTGGAAACTGCCTCGGGTGATACTCA
TGACGGTGTCGTAACAGCTCTCTCTGCACATCCTTCCGGACACCGCGTTG
CATACCTGGACGACATTGTGCTCTCCGCATCTGCGGATTGGACTATAAAG
TTGTGGTACTTTCACAAATCGCAACACCCAGTTTGTATTGATACCTACGA
TATGGTGGAGTATGGGAGGATAAATGATGTTGCATGGAGCAATCAGCATC
CCACCGTCTTTTGCACCGGTAGCGAAGCTGGATACCTTTCTCTTTTCGAT
ATTAGCCATCACCTATCTCCTTCAAGTGGTCGAAACTATTGGCACTTTGA
AACCCCAGCGACCGATGGGAACACCCAAATTACCAACATTCAATGGGATC
CCATTTCTCGACATGTTTGTGCTGGTAGCTCGAAAGGTACTCTTTCTTTA
TGGCAGTGCACATCTGACTTCGCCTCCTTACCAGATGCTGAATGGACAGG
GCAGTACTTAAAGTCTAAGCAGAGCACCGAAGTCCGGTGA
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protein sequence of Ggra2212.t1

>Ggra2212.t1 ID=Ggra2212.t1|Name=Ggra2212.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=530bp
MDQRFNIEERRRRLQQQKETLIGLQSYQKRGTQSAKQKNHGRSSYSTNQG
RSSTDRSSFSRAFKAELNLPPSNENSQNDITVPASMGANVRKRTYLPELM
GDASFSSKFGLIPSEEGEQEKITDSLHSGSQRASNGSPLRFQVTLKDKLT
DARPVTGIKFHKKFDDIIVTSHGSRSDQCLRSEPGLNAIWCLDEGRNTLQ
RTLTANAAMSALELPSISPTLVVGGTVSGSVLFWDTRLKSSLPIHALEGD
TAFVAGFHDRQQITALRTTAESSPYFVSTSIGGHVCKWTLSKPDVPLTKD
TLRENGTAAELNISSFDFPRTARLAGGEKTTANKFTSLFVGDDSGGIHRA
DGNDASWTVETASGDTHDGVVTALSAHPSGHRVAYLDDIVLSASADWTIK
LWYFHKSQHPVCIDTYDMVEYGRINDVAWSNQHPTVFCTGSEAGYLSLFD
ISHHLSPSSGRNYWHFETPATDGNTQITNIQWDPISRHVCAGSSKGTLSL
WQCTSDFASLPDAEWTGQYLKSKQSTEVR*
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mRNA from alignment at tig00000900_pilon:663270..664859-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2212.t1 ID=Ggra2212.t1|Name=Ggra2212.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1590bp|location=Sequence derived from alignment at tig00000900_pilon:663270..664859- (Gracilaria gracilis GNS1m male)
ATGGATCAACGCTTTAATATAGAAGAAAGGCGACGAAGGCTTCAACAACA
GAAGGAGACCCTTATTGGTTTGCAGTCATATCAGAAAAGGGGAACCCAGT
CCGCTAAGCAGAAGAACCATGGACGTTCTTCTTACTCGACGAATCAGGGT
CGGAGTTCAACTGATCGCAGCTCTTTCTCACGCGCCTTCAAGGCGGAACT
GAATCTCCCTCCTTCCAATGAGAATTCTCAGAATGATATCACAGTTCCAG
CCTCAATGGGAGCTAATGTCAGAAAACGAACATATCTGCCAGAGCTTATG
GGTGACGCAAGCTTTTCTTCCAAGTTTGGTCTTATTCCCTCAGAGGAAGG
AGAGCAAGAGAAGATAACAGACAGTTTACATTCCGGGTCCCAACGCGCTT
CAAACGGATCTCCGCTGCGGTTTCAAGTTACTCTCAAAGATAAGTTAACA
GATGCCCGGCCGGTTACTGGGATAAAGTTCCACAAGAAATTCGATGATAT
TATTGTTACATCCCACGGCTCTCGTTCTGATCAGTGCTTGCGTTCAGAAC
CTGGACTGAACGCAATATGGTGTTTAGATGAAGGTCGGAATACCTTGCAG
AGAACTCTAACAGCCAACGCTGCCATGTCAGCTTTGGAACTTCCGAGTAT
ATCCCCGACACTAGTTGTTGGCGGAACCGTCTCTGGCAGCGTACTCTTTT
GGGACACTCGCTTGAAGTCTTCCTTGCCAATTCATGCCCTGGAGGGTGAC
ACAGCATTCGTAGCTGGTTTTCACGACAGGCAGCAGATTACTGCACTAAG
GACTACAGCAGAGTCTTCTCCATATTTCGTTTCAACGAGCATTGGTGGCC
ATGTTTGCAAGTGGACGCTTTCAAAGCCGGATGTGCCACTTACCAAGGAC
ACACTGCGGGAGAATGGAACAGCAGCCGAACTGAACATTTCTAGCTTCGA
TTTTCCGCGCACGGCGAGACTTGCTGGGGGTGAGAAGACGACGGCAAATA
AGTTCACATCTCTATTTGTCGGAGACGACTCGGGAGGAATTCATCGGGCA
GATGGTAATGATGCTTCGTGGACTGTGGAAACTGCCTCGGGTGATACTCA
TGACGGTGTCGTAACAGCTCTCTCTGCACATCCTTCCGGACACCGCGTTG
CATACCTGGACGACATTGTGCTCTCCGCATCTGCGGATTGGACTATAAAG
TTGTGGTACTTTCACAAATCGCAACACCCAGTTTGTATTGATACCTACGA
TATGGTGGAGTATGGGAGGATAAATGATGTTGCATGGAGCAATCAGCATC
CCACCGTCTTTTGCACCGGTAGCGAAGCTGGATACCTTTCTCTTTTCGAT
ATTAGCCATCACCTATCTCCTTCAAGTGGTCGAAACTATTGGCACTTTGA
AACCCCAGCGACCGATGGGAACACCCAAATTACCAACATTCAATGGGATC
CCATTTCTCGACATGTTTGTGCTGGTAGCTCGAAAGGTACTCTTTCTTTA
TGGCAGTGCACATCTGACTTCGCCTCCTTACCAGATGCTGAATGGACAGG
GCAGTACTTAAAGTCTAAGCAGAGCACCGAAGTCCGGTGA
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Coding sequence (CDS) from alignment at tig00000900_pilon:663270..664859-

>Ggra2212.t1 ID=Ggra2212.t1|Name=Ggra2212.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1590bp|location=Sequence derived from alignment at tig00000900_pilon:663270..664859- (Gracilaria gracilis GNS1m male)
ATGGATCAACGCTTTAATATAGAAGAAAGGCGACGAAGGCTTCAACAACA
GAAGGAGACCCTTATTGGTTTGCAGTCATATCAGAAAAGGGGAACCCAGT
CCGCTAAGCAGAAGAACCATGGACGTTCTTCTTACTCGACGAATCAGGGT
CGGAGTTCAACTGATCGCAGCTCTTTCTCACGCGCCTTCAAGGCGGAACT
GAATCTCCCTCCTTCCAATGAGAATTCTCAGAATGATATCACAGTTCCAG
CCTCAATGGGAGCTAATGTCAGAAAACGAACATATCTGCCAGAGCTTATG
GGTGACGCAAGCTTTTCTTCCAAGTTTGGTCTTATTCCCTCAGAGGAAGG
AGAGCAAGAGAAGATAACAGACAGTTTACATTCCGGGTCCCAACGCGCTT
CAAACGGATCTCCGCTGCGGTTTCAAGTTACTCTCAAAGATAAGTTAACA
GATGCCCGGCCGGTTACTGGGATAAAGTTCCACAAGAAATTCGATGATAT
TATTGTTACATCCCACGGCTCTCGTTCTGATCAGTGCTTGCGTTCAGAAC
CTGGACTGAACGCAATATGGTGTTTAGATGAAGGTCGGAATACCTTGCAG
AGAACTCTAACAGCCAACGCTGCCATGTCAGCTTTGGAACTTCCGAGTAT
ATCCCCGACACTAGTTGTTGGCGGAACCGTCTCTGGCAGCGTACTCTTTT
GGGACACTCGCTTGAAGTCTTCCTTGCCAATTCATGCCCTGGAGGGTGAC
ACAGCATTCGTAGCTGGTTTTCACGACAGGCAGCAGATTACTGCACTAAG
GACTACAGCAGAGTCTTCTCCATATTTCGTTTCAACGAGCATTGGTGGCC
ATGTTTGCAAGTGGACGCTTTCAAAGCCGGATGTGCCACTTACCAAGGAC
ACACTGCGGGAGAATGGAACAGCAGCCGAACTGAACATTTCTAGCTTCGA
TTTTCCGCGCACGGCGAGACTTGCTGGGGGTGAGAAGACGACGGCAAATA
AGTTCACATCTCTATTTGTCGGAGACGACTCGGGAGGAATTCATCGGGCA
GATGGTAATGATGCTTCGTGGACTGTGGAAACTGCCTCGGGTGATACTCA
TGACGGTGTCGTAACAGCTCTCTCTGCACATCCTTCCGGACACCGCGTTG
CATACCTGGACGACATTGTGCTCTCCGCATCTGCGGATTGGACTATAAAG
TTGTGGTACTTTCACAAATCGCAACACCCAGTTTGTATTGATACCTACGA
TATGGTGGAGTATGGGAGGATAAATGATGTTGCATGGAGCAATCAGCATC
CCACCGTCTTTTGCACCGGTAGCGAAGCTGGATACCTTTCTCTTTTCGAT
ATTAGCCATCACCTATCTCCTTCAAGTGGTCGAAACTATTGGCACTTTGA
AACCCCAGCGACCGATGGGAACACCCAAATTACCAACATTCAATGGGATC
CCATTTCTCGACATGTTTGTGCTGGTAGCTCGAAAGGTACTCTTTCTTTA
TGGCAGTGCACATCTGACTTCGCCTCCTTACCAGATGCTGAATGGACAGG
GCAGTACTTAAAGTCTAAGCAGAGCACCGAAGTCCGGTGA
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