Ggra2209.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2209.t1
Unique Name	Ggra2209.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	722

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:653904..656069 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	31033.ENSTRUP00000020138
Preferred name	PREP
PFAMs	Peptidase_S9,Peptidase_S9_N
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K01322
KEGG Pathway	ko04614,map04614
GOs	GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0016788,GO:0017171,GO:0019538,GO:0033218,GO:0042277,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0052689,GO:0070011,GO:0071704,GO:0140096,GO:1901564
Evalue	6.78e-216
EggNOG OGs	COG1505@1\|root,KOG2237@2759\|Eukaryota,38DGX@33154\|Opisthokonta,3BADV@33208\|Metazoa,3CXQ9@33213\|Bilateria,47ZPE@7711\|Chordata,48V8W@7742\|Vertebrata,49VWD@7898\|Actinopterygii
EC	3.4.21.26
Description	Prolyl endopeptidase
COG category	O
BRITE	ko00000,ko00001,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2209	Ggra2209	Gracilaria gracilis GNS1m male	gene	tig00000900_pilon 653904..656069 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2209.t1.start1	Ggra2209.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000900_pilon 653904..653906 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2209.t1.CDS1	Ggra2209.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 653904..656069 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2209.t1.exon1	Ggra2209.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 653904..656069 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2209.t1.stop1	Ggra2209.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000900_pilon 656067..656069 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2209.t1	Ggra2209.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000900_pilon 653904..656069 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000900_pilon:653904..656069+
coding sequence from alignment at tig00000900_pilon:653904..656069+

mRNA sequence

>Ggra2209.t1 ID=Ggra2209.t1|Name=Ggra2209.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=722bp
MSAISYPASRRDESIVDNLHGYEVPDPYRWLENPDSVETAAWVEEQNVVT
SSFLSAAEPARPKIQSVIEGLMNYDRFSCPWKRGSYFYYHHRAGLANQAV
LMQTEGIDSEPRVFLDPNTMSEDGTVSIGSMSWSHDGQYLAYGLKRGGSD
WEEIRVMDCQTLDHLSEALEWAKFTSIAWTHDGKGFYYARYPPPASLEGV
DDKEKRGAETDQSLFQALYYHSIGSSQDEDRLVLTDDEYPQRLYGVSITF
DGQYLLVTSHDDCSPKNQVWVVNLTKAFGSEAVGMKKVIDLSYNAQFLYI
ANDEDTFYFNTNWKAPKNRIIRMRIDEAVENCSELIAEHSDKVLSEARVV
NYDQLVLKYMEDAHDKLSIHNLKSGERMFDIPLPDIGSVSLSGRRDQDFM
TYMFTSFLYAGIVFYVDLTIPLQDGTRVFRKMDPPGFDPSKYKTKQVFYK
SKDGTKVPMFIIGARSLFDSGSSSDSPSLLYGYGGFMISLTPAYSARWAA
WLECLGGSVAIANLRGGDEYGSEWHEQGILEKKQNVFDDFQFAARHLCNE
MKITTPKRLMIMGGSNGGLLVGACVNQAPELYGAAVAQVGVHDIFRFHKF
TIGSAWVSDFGDPDNPEHFEFQKKYSPLHNVFSPDEKGIPYPAILLTTGD
HDDRVVPLHTLKFGATLQYKAGNSELQKGRPLLIRVDVKAGHGAGKPTTK
VIQELCDTLLFAALSLDVQVA*

spliced messenger RNA

>Ggra2209.t1 ID=Ggra2209.t1|Name=Ggra2209.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2166bp|location=Sequence derived from alignment at tig00000900_pilon:653904..656069+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCAATATCCTACCCCGCATCTCGAAGGGATGAATCCATAGTAGA
CAATCTACACGGTTACGAAGTTCCAGACCCTTACCGATGGCTGGAAAACC
CAGACAGCGTTGAAACAGCCGCGTGGGTAGAGGAACAGAATGTGGTCACA
TCGTCGTTCCTCAGTGCCGCTGAACCTGCTCGACCGAAGATTCAATCTGT
AATTGAGGGGCTTATGAACTATGATAGGTTTTCGTGTCCATGGAAAAGAG
GCTCGTACTTCTATTACCACCACCGGGCTGGCCTCGCTAATCAAGCGGTG
TTGATGCAGACCGAAGGTATTGATTCAGAACCACGAGTGTTTCTAGACCC
TAACACAATGTCTGAAGACGGAACTGTTAGCATAGGTTCCATGTCTTGGT
CGCACGATGGCCAATACCTTGCGTATGGGTTGAAGCGAGGAGGAAGTGAC
TGGGAGGAGATCCGTGTTATGGACTGCCAAACTCTGGATCACCTATCTGA
AGCACTTGAGTGGGCGAAGTTTACCAGCATTGCTTGGACTCATGACGGAA
AAGGTTTCTATTACGCTCGATACCCTCCACCGGCATCTCTAGAAGGTGTT
GATGACAAAGAAAAACGAGGGGCTGAAACAGACCAATCTCTCTTTCAAGC
ACTCTATTATCATAGTATTGGAAGCTCACAGGACGAAGACCGTCTCGTAT
TAACAGATGACGAATACCCTCAGCGCCTGTATGGTGTAAGTATAACGTTT
GATGGGCAATATCTTCTAGTGACATCCCACGATGACTGTTCTCCAAAGAA
TCAAGTCTGGGTTGTCAACCTGACCAAGGCTTTTGGGAGCGAAGCAGTAG
GTATGAAGAAGGTCATAGATCTTTCATATAACGCGCAATTTTTATATATC
GCGAACGATGAAGACACTTTTTACTTCAATACGAACTGGAAAGCACCAAA
GAACCGAATAATCAGAATGAGGATTGATGAGGCTGTTGAGAATTGCTCAG
AGTTAATCGCTGAACATTCGGATAAAGTTCTCTCTGAGGCAAGGGTCGTG
AACTATGACCAGCTTGTGTTGAAATACATGGAAGACGCTCATGATAAGCT
TTCGATTCATAACTTGAAGTCTGGAGAACGGATGTTTGATATTCCTTTGC
CAGACATCGGCTCCGTTTCATTATCTGGACGCCGCGACCAGGACTTTATG
ACATATATGTTTACAAGTTTTCTTTATGCAGGCATTGTGTTCTACGTTGA
CTTGACAATTCCCCTCCAGGACGGGACTCGTGTGTTTCGAAAGATGGATC
CACCCGGATTCGATCCTTCTAAATACAAAACGAAGCAGGTGTTCTATAAA
TCAAAGGATGGAACCAAGGTACCAATGTTCATCATTGGCGCTCGTAGTTT
GTTTGACAGTGGTTCTTCGTCTGACAGTCCGTCTCTTTTGTATGGCTATG
GTGGTTTTATGATATCTTTGACTCCAGCGTATTCCGCTAGATGGGCAGCT
TGGCTTGAATGTCTTGGTGGTTCTGTGGCCATAGCCAACTTGCGAGGCGG
AGATGAGTATGGTTCCGAATGGCATGAACAAGGAATCTTGGAGAAGAAAC
AAAATGTCTTTGATGACTTCCAATTCGCAGCAAGGCATCTATGTAACGAG
ATGAAAATCACAACGCCGAAACGGTTGATGATCATGGGCGGCAGCAATGG
TGGCCTGCTCGTTGGTGCCTGCGTCAATCAAGCACCAGAGCTTTACGGAG
CAGCCGTTGCCCAAGTTGGGGTTCATGACATATTTCGTTTCCACAAATTC
ACGATTGGATCAGCGTGGGTCAGTGACTTTGGAGACCCAGATAATCCTGA
GCATTTCGAGTTCCAGAAGAAGTACTCGCCTTTACATAATGTGTTTTCTC
CAGATGAGAAAGGAATACCCTATCCCGCGATTCTCCTTACCACGGGGGAC
CACGATGATAGAGTTGTTCCGTTGCACACGCTCAAGTTCGGGGCTACGTT
ACAATACAAAGCAGGTAACAGTGAGCTTCAGAAAGGAAGGCCGCTTCTCA
TACGAGTAGATGTTAAAGCTGGACATGGAGCTGGCAAGCCTACGACCAAG
GTTATTCAAGAATTGTGTGATACACTGCTCTTTGCTGCTCTTTCATTGGA
TGTGCAAGTAGCCTAA

protein sequence of Ggra2209.t1

>Ggra2209.t1 ID=Ggra2209.t1|Name=Ggra2209.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=722bp
MSAISYPASRRDESIVDNLHGYEVPDPYRWLENPDSVETAAWVEEQNVVT
SSFLSAAEPARPKIQSVIEGLMNYDRFSCPWKRGSYFYYHHRAGLANQAV
LMQTEGIDSEPRVFLDPNTMSEDGTVSIGSMSWSHDGQYLAYGLKRGGSD
WEEIRVMDCQTLDHLSEALEWAKFTSIAWTHDGKGFYYARYPPPASLEGV
DDKEKRGAETDQSLFQALYYHSIGSSQDEDRLVLTDDEYPQRLYGVSITF
DGQYLLVTSHDDCSPKNQVWVVNLTKAFGSEAVGMKKVIDLSYNAQFLYI
ANDEDTFYFNTNWKAPKNRIIRMRIDEAVENCSELIAEHSDKVLSEARVV
NYDQLVLKYMEDAHDKLSIHNLKSGERMFDIPLPDIGSVSLSGRRDQDFM
TYMFTSFLYAGIVFYVDLTIPLQDGTRVFRKMDPPGFDPSKYKTKQVFYK
SKDGTKVPMFIIGARSLFDSGSSSDSPSLLYGYGGFMISLTPAYSARWAA
WLECLGGSVAIANLRGGDEYGSEWHEQGILEKKQNVFDDFQFAARHLCNE
MKITTPKRLMIMGGSNGGLLVGACVNQAPELYGAAVAQVGVHDIFRFHKF
TIGSAWVSDFGDPDNPEHFEFQKKYSPLHNVFSPDEKGIPYPAILLTTGD
HDDRVVPLHTLKFGATLQYKAGNSELQKGRPLLIRVDVKAGHGAGKPTTK
VIQELCDTLLFAALSLDVQVA*

mRNA from alignment at tig00000900_pilon:653904..656069+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2209.t1 ID=Ggra2209.t1|Name=Ggra2209.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2166bp|location=Sequence derived from alignment at tig00000900_pilon:653904..656069+ (Gracilaria gracilis GNS1m male)
ATGTCTGCAATATCCTACCCCGCATCTCGAAGGGATGAATCCATAGTAGA
CAATCTACACGGTTACGAAGTTCCAGACCCTTACCGATGGCTGGAAAACC
CAGACAGCGTTGAAACAGCCGCGTGGGTAGAGGAACAGAATGTGGTCACA
TCGTCGTTCCTCAGTGCCGCTGAACCTGCTCGACCGAAGATTCAATCTGT
AATTGAGGGGCTTATGAACTATGATAGGTTTTCGTGTCCATGGAAAAGAG
GCTCGTACTTCTATTACCACCACCGGGCTGGCCTCGCTAATCAAGCGGTG
TTGATGCAGACCGAAGGTATTGATTCAGAACCACGAGTGTTTCTAGACCC
TAACACAATGTCTGAAGACGGAACTGTTAGCATAGGTTCCATGTCTTGGT
CGCACGATGGCCAATACCTTGCGTATGGGTTGAAGCGAGGAGGAAGTGAC
TGGGAGGAGATCCGTGTTATGGACTGCCAAACTCTGGATCACCTATCTGA
AGCACTTGAGTGGGCGAAGTTTACCAGCATTGCTTGGACTCATGACGGAA
AAGGTTTCTATTACGCTCGATACCCTCCACCGGCATCTCTAGAAGGTGTT
GATGACAAAGAAAAACGAGGGGCTGAAACAGACCAATCTCTCTTTCAAGC
ACTCTATTATCATAGTATTGGAAGCTCACAGGACGAAGACCGTCTCGTAT
TAACAGATGACGAATACCCTCAGCGCCTGTATGGTGTAAGTATAACGTTT
GATGGGCAATATCTTCTAGTGACATCCCACGATGACTGTTCTCCAAAGAA
TCAAGTCTGGGTTGTCAACCTGACCAAGGCTTTTGGGAGCGAAGCAGTAG
GTATGAAGAAGGTCATAGATCTTTCATATAACGCGCAATTTTTATATATC
GCGAACGATGAAGACACTTTTTACTTCAATACGAACTGGAAAGCACCAAA
GAACCGAATAATCAGAATGAGGATTGATGAGGCTGTTGAGAATTGCTCAG
AGTTAATCGCTGAACATTCGGATAAAGTTCTCTCTGAGGCAAGGGTCGTG
AACTATGACCAGCTTGTGTTGAAATACATGGAAGACGCTCATGATAAGCT
TTCGATTCATAACTTGAAGTCTGGAGAACGGATGTTTGATATTCCTTTGC
CAGACATCGGCTCCGTTTCATTATCTGGACGCCGCGACCAGGACTTTATG
ACATATATGTTTACAAGTTTTCTTTATGCAGGCATTGTGTTCTACGTTGA
CTTGACAATTCCCCTCCAGGACGGGACTCGTGTGTTTCGAAAGATGGATC
CACCCGGATTCGATCCTTCTAAATACAAAACGAAGCAGGTGTTCTATAAA
TCAAAGGATGGAACCAAGGTACCAATGTTCATCATTGGCGCTCGTAGTTT
GTTTGACAGTGGTTCTTCGTCTGACAGTCCGTCTCTTTTGTATGGCTATG
GTGGTTTTATGATATCTTTGACTCCAGCGTATTCCGCTAGATGGGCAGCT
TGGCTTGAATGTCTTGGTGGTTCTGTGGCCATAGCCAACTTGCGAGGCGG
AGATGAGTATGGTTCCGAATGGCATGAACAAGGAATCTTGGAGAAGAAAC
AAAATGTCTTTGATGACTTCCAATTCGCAGCAAGGCATCTATGTAACGAG
ATGAAAATCACAACGCCGAAACGGTTGATGATCATGGGCGGCAGCAATGG
TGGCCTGCTCGTTGGTGCCTGCGTCAATCAAGCACCAGAGCTTTACGGAG
CAGCCGTTGCCCAAGTTGGGGTTCATGACATATTTCGTTTCCACAAATTC
ACGATTGGATCAGCGTGGGTCAGTGACTTTGGAGACCCAGATAATCCTGA
GCATTTCGAGTTCCAGAAGAAGTACTCGCCTTTACATAATGTGTTTTCTC
CAGATGAGAAAGGAATACCCTATCCCGCGATTCTCCTTACCACGGGGGAC
CACGATGATAGAGTTGTTCCGTTGCACACGCTCAAGTTCGGGGCTACGTT
ACAATACAAAGCAGGTAACAGTGAGCTTCAGAAAGGAAGGCCGCTTCTCA
TACGAGTAGATGTTAAAGCTGGACATGGAGCTGGCAAGCCTACGACCAAG
GTTATTCAAGAATTGTGTGATACACTGCTCTTTGCTGCTCTTTCATTGGA
TGTGCAAGTAGCCTAA

Coding sequence (CDS) from alignment at tig00000900_pilon:653904..656069+

>Ggra2209.t1 ID=Ggra2209.t1|Name=Ggra2209.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2166bp|location=Sequence derived from alignment at tig00000900_pilon:653904..656069+ (Gracilaria gracilis GNS1m male)
ATGTCTGCAATATCCTACCCCGCATCTCGAAGGGATGAATCCATAGTAGA
CAATCTACACGGTTACGAAGTTCCAGACCCTTACCGATGGCTGGAAAACC
CAGACAGCGTTGAAACAGCCGCGTGGGTAGAGGAACAGAATGTGGTCACA
TCGTCGTTCCTCAGTGCCGCTGAACCTGCTCGACCGAAGATTCAATCTGT
AATTGAGGGGCTTATGAACTATGATAGGTTTTCGTGTCCATGGAAAAGAG
GCTCGTACTTCTATTACCACCACCGGGCTGGCCTCGCTAATCAAGCGGTG
TTGATGCAGACCGAAGGTATTGATTCAGAACCACGAGTGTTTCTAGACCC
TAACACAATGTCTGAAGACGGAACTGTTAGCATAGGTTCCATGTCTTGGT
CGCACGATGGCCAATACCTTGCGTATGGGTTGAAGCGAGGAGGAAGTGAC
TGGGAGGAGATCCGTGTTATGGACTGCCAAACTCTGGATCACCTATCTGA
AGCACTTGAGTGGGCGAAGTTTACCAGCATTGCTTGGACTCATGACGGAA
AAGGTTTCTATTACGCTCGATACCCTCCACCGGCATCTCTAGAAGGTGTT
GATGACAAAGAAAAACGAGGGGCTGAAACAGACCAATCTCTCTTTCAAGC
ACTCTATTATCATAGTATTGGAAGCTCACAGGACGAAGACCGTCTCGTAT
TAACAGATGACGAATACCCTCAGCGCCTGTATGGTGTAAGTATAACGTTT
GATGGGCAATATCTTCTAGTGACATCCCACGATGACTGTTCTCCAAAGAA
TCAAGTCTGGGTTGTCAACCTGACCAAGGCTTTTGGGAGCGAAGCAGTAG
GTATGAAGAAGGTCATAGATCTTTCATATAACGCGCAATTTTTATATATC
GCGAACGATGAAGACACTTTTTACTTCAATACGAACTGGAAAGCACCAAA
GAACCGAATAATCAGAATGAGGATTGATGAGGCTGTTGAGAATTGCTCAG
AGTTAATCGCTGAACATTCGGATAAAGTTCTCTCTGAGGCAAGGGTCGTG
AACTATGACCAGCTTGTGTTGAAATACATGGAAGACGCTCATGATAAGCT
TTCGATTCATAACTTGAAGTCTGGAGAACGGATGTTTGATATTCCTTTGC
CAGACATCGGCTCCGTTTCATTATCTGGACGCCGCGACCAGGACTTTATG
ACATATATGTTTACAAGTTTTCTTTATGCAGGCATTGTGTTCTACGTTGA
CTTGACAATTCCCCTCCAGGACGGGACTCGTGTGTTTCGAAAGATGGATC
CACCCGGATTCGATCCTTCTAAATACAAAACGAAGCAGGTGTTCTATAAA
TCAAAGGATGGAACCAAGGTACCAATGTTCATCATTGGCGCTCGTAGTTT
GTTTGACAGTGGTTCTTCGTCTGACAGTCCGTCTCTTTTGTATGGCTATG
GTGGTTTTATGATATCTTTGACTCCAGCGTATTCCGCTAGATGGGCAGCT
TGGCTTGAATGTCTTGGTGGTTCTGTGGCCATAGCCAACTTGCGAGGCGG
AGATGAGTATGGTTCCGAATGGCATGAACAAGGAATCTTGGAGAAGAAAC
AAAATGTCTTTGATGACTTCCAATTCGCAGCAAGGCATCTATGTAACGAG
ATGAAAATCACAACGCCGAAACGGTTGATGATCATGGGCGGCAGCAATGG
TGGCCTGCTCGTTGGTGCCTGCGTCAATCAAGCACCAGAGCTTTACGGAG
CAGCCGTTGCCCAAGTTGGGGTTCATGACATATTTCGTTTCCACAAATTC
ACGATTGGATCAGCGTGGGTCAGTGACTTTGGAGACCCAGATAATCCTGA
GCATTTCGAGTTCCAGAAGAAGTACTCGCCTTTACATAATGTGTTTTCTC
CAGATGAGAAAGGAATACCCTATCCCGCGATTCTCCTTACCACGGGGGAC
CACGATGATAGAGTTGTTCCGTTGCACACGCTCAAGTTCGGGGCTACGTT
ACAATACAAAGCAGGTAACAGTGAGCTTCAGAAAGGAAGGCCGCTTCTCA
TACGAGTAGATGTTAAAGCTGGACATGGAGCTGGCAAGCCTACGACCAAG
GTTATTCAAGAATTGTGTGATACACTGCTCTTTGCTGCTCTTTCATTGGA
TGTGCAAGTAGCCTAA