Ggra2205.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2205.t2
Unique NameGgra2205.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length398
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:646643..647911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2205Ggra2205Gracilaria gracilis GNS1m malegenetig00000900_pilon 646643..648042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2205.t2Ggra2205.t2Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 646643..647911 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2205.t2.start1Ggra2205.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 646643..646645 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2205.t2.CDS1Ggra2205.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 646643..647788 +
Ggra2205.t2.CDS2Ggra2205.t2.CDS2Gracilaria gracilis GNS1m maleCDStig00000900_pilon 647864..647911 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2205.t2.exon1Ggra2205.t2.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 646643..647788 +
Ggra2205.t2.exon2Ggra2205.t2.exon2Gracilaria gracilis GNS1m maleexontig00000900_pilon 647864..647911 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2205.t2.intron1Ggra2205.t2.intron1Gracilaria gracilis GNS1m maleintrontig00000900_pilon 647789..647863 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2205.t2.stop1Ggra2205.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 647909..647911 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2205.t2 ID=Ggra2205.t2|Name=Ggra2205.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=398bp
MSTASLPTRYWHGAALSPSERRRQWLVNHGLLSPKPTASRRLPNLFSKPA
SSSSASVPSMHDSFVHLQVDDNAVPLVVARRQNEHSQPLDAAARTLSLPI
ENSSRVPMTRFRRAPPSKWFSRNSNHSRSASSRSSRIRAWFGSRRYRDVV
TQPDVPTHRPQSLPSLRRSASLTSSELDIDRLHQPPDREVVNNRPTSSNM
PSSLSPTSATHTNFNKSAANPRSRRRAVYKVVDSHIPRRVLKPQAHYDKS
SWNAYRSRIDKLADDEQFMNYLTAPVQRHPPVNVPTNDGAANAQQLAVNK
LYPLAFIKLLEAQAKMAAEEAPPCDPAEEQHRYDDIDGNDEARIERTTST
GLRDMKRFRTISSESRRNLYNGPATISGSLDHENHISSTPVRFSSQC*
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spliced messenger RNA

>Ggra2205.t2 ID=Ggra2205.t2|Name=Ggra2205.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1194bp|location=Sequence derived from alignment at tig00000900_pilon:646643..647911+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTACCGCGTCGTTGCCCACCAGGTACTGGCACGGCGCCGCGCTCTC
CCCGAGCGAGCGCCGTCGTCAGTGGCTAGTCAACCATGGTTTGTTATCTC
CAAAGCCCACCGCCTCCCGTCGTCTCCCCAATCTCTTTTCGAAGCCCGCC
TCATCCTCCTCTGCCTCAGTGCCTTCCATGCACGATTCCTTCGTACACCT
TCAAGTGGACGACAATGCCGTGCCCCTCGTAGTGGCACGTCGTCAAAATG
AGCACTCGCAACCTCTCGACGCGGCCGCACGAACACTGTCGCTACCCATT
GAAAACTCCTCTCGTGTGCCCATGACGCGCTTCAGAAGGGCTCCTCCGTC
TAAATGGTTTTCTAGAAATTCCAATCACTCCCGTTCTGCTTCCTCCCGCT
CCAGTCGCATTCGTGCCTGGTTCGGCTCCAGAAGGTACCGAGATGTTGTC
ACCCAACCCGATGTGCCCACTCATCGACCGCAAAGCCTTCCATCGCTTCG
CCGCTCCGCTAGTCTCACCTCCTCTGAGCTCGACATAGACCGTCTTCATC
AACCCCCGGACAGGGAGGTGGTCAACAACCGCCCAACCTCATCTAATATG
CCGTCATCTCTCAGCCCCACATCGGCTACCCACACCAACTTCAACAAATC
CGCCGCCAATCCGCGTTCGCGCAGGCGTGCTGTGTACAAGGTCGTGGACT
CCCATATTCCTCGTCGTGTGCTCAAGCCACAAGCGCACTATGACAAGTCT
TCTTGGAATGCGTATCGCTCCCGCATTGACAAGCTTGCGGATGATGAACA
GTTTATGAACTATCTTACTGCCCCTGTGCAACGCCATCCACCGGTAAACG
TTCCGACCAACGATGGCGCTGCCAATGCGCAACAGCTTGCCGTAAACAAG
CTCTATCCACTCGCTTTCATAAAGCTGCTTGAGGCGCAGGCAAAGATGGC
TGCTGAGGAAGCGCCTCCTTGTGACCCGGCCGAAGAGCAACATCGTTACG
ATGACATTGATGGCAACGATGAGGCACGTATTGAGAGGACCACCTCCACT
GGTTTGCGAGACATGAAGAGGTTCAGGACCATATCATCTGAGAGCAGGCG
CAATCTATACAATGGACCGGCCACCATCTCGGGCTCGCTAGACCATGAGA
ATCATATCTCATCGACTCCTGTGCGCTTTTCGAGTCAGTGTTAG
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protein sequence of Ggra2205.t2

>Ggra2205.t2 ID=Ggra2205.t2|Name=Ggra2205.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=398bp
MSTASLPTRYWHGAALSPSERRRQWLVNHGLLSPKPTASRRLPNLFSKPA
SSSSASVPSMHDSFVHLQVDDNAVPLVVARRQNEHSQPLDAAARTLSLPI
ENSSRVPMTRFRRAPPSKWFSRNSNHSRSASSRSSRIRAWFGSRRYRDVV
TQPDVPTHRPQSLPSLRRSASLTSSELDIDRLHQPPDREVVNNRPTSSNM
PSSLSPTSATHTNFNKSAANPRSRRRAVYKVVDSHIPRRVLKPQAHYDKS
SWNAYRSRIDKLADDEQFMNYLTAPVQRHPPVNVPTNDGAANAQQLAVNK
LYPLAFIKLLEAQAKMAAEEAPPCDPAEEQHRYDDIDGNDEARIERTTST
GLRDMKRFRTISSESRRNLYNGPATISGSLDHENHISSTPVRFSSQC*
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mRNA from alignment at tig00000900_pilon:646643..647911+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2205.t2 ID=Ggra2205.t2|Name=Ggra2205.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00000900_pilon:646643..647911+ (Gracilaria gracilis GNS1m male)
ATGTCTACCGCGTCGTTGCCCACCAGGTACTGGCACGGCGCCGCGCTCTC
CCCGAGCGAGCGCCGTCGTCAGTGGCTAGTCAACCATGGTTTGTTATCTC
CAAAGCCCACCGCCTCCCGTCGTCTCCCCAATCTCTTTTCGAAGCCCGCC
TCATCCTCCTCTGCCTCAGTGCCTTCCATGCACGATTCCTTCGTACACCT
TCAAGTGGACGACAATGCCGTGCCCCTCGTAGTGGCACGTCGTCAAAATG
AGCACTCGCAACCTCTCGACGCGGCCGCACGAACACTGTCGCTACCCATT
GAAAACTCCTCTCGTGTGCCCATGACGCGCTTCAGAAGGGCTCCTCCGTC
TAAATGGTTTTCTAGAAATTCCAATCACTCCCGTTCTGCTTCCTCCCGCT
CCAGTCGCATTCGTGCCTGGTTCGGCTCCAGAAGGTACCGAGATGTTGTC
ACCCAACCCGATGTGCCCACTCATCGACCGCAAAGCCTTCCATCGCTTCG
CCGCTCCGCTAGTCTCACCTCCTCTGAGCTCGACATAGACCGTCTTCATC
AACCCCCGGACAGGGAGGTGGTCAACAACCGCCCAACCTCATCTAATATG
CCGTCATCTCTCAGCCCCACATCGGCTACCCACACCAACTTCAACAAATC
CGCCGCCAATCCGCGTTCGCGCAGGCGTGCTGTGTACAAGGTCGTGGACT
CCCATATTCCTCGTCGTGTGCTCAAGCCACAAGCGCACTATGACAAGTCT
TCTTGGAATGCGTATCGCTCCCGCATTGACAAGCTTGCGGATGATGAACA
GTTTATGAACTATCTTACTGCCCCTGTGCAACGCCATCCACCGGTAAACG
TTCCGACCAACGATGGCGCTGCCAATGCGCAACAGCTTGCCGTAAACAAG
CTCTATCCACTCGCTTTCATAAAGCTGCTTGAGGCGCAGGCAAAGATGGC
TGCTGAGGAAGCGCCTCCTTGTGACCCGGCCGAAGAGCAACATCGTTACG
ATGACATTGATGGCAACGATGAGGCACGTATTGAGAGGACCACCTCCACT
GGTTTGCGAGACATGAAGAGGTTCAGGACCATATCATCTGAGAGCAGGCG
CAATCTATACAATGGACCGGCCACCATCTCGGGCTCGCTAGACCATGTAC
GTCTGCTCAAGTTCTGCTCGGAAAGCGGTAGCGAGTCTTCTCACTCTAGT
TTTTTCTCGAGGTTAACGCAGGAGAATCATATCTCATCGACTCCTGTGCG
CTTTTCGAGTCAGTGTTAG
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Coding sequence (CDS) from alignment at tig00000900_pilon:646643..647911+

>Ggra2205.t2 ID=Ggra2205.t2|Name=Ggra2205.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1194bp|location=Sequence derived from alignment at tig00000900_pilon:646643..647911+ (Gracilaria gracilis GNS1m male)
ATGTCTACCGCGTCGTTGCCCACCAGGTACTGGCACGGCGCCGCGCTCTC
CCCGAGCGAGCGCCGTCGTCAGTGGCTAGTCAACCATGGTTTGTTATCTC
CAAAGCCCACCGCCTCCCGTCGTCTCCCCAATCTCTTTTCGAAGCCCGCC
TCATCCTCCTCTGCCTCAGTGCCTTCCATGCACGATTCCTTCGTACACCT
TCAAGTGGACGACAATGCCGTGCCCCTCGTAGTGGCACGTCGTCAAAATG
AGCACTCGCAACCTCTCGACGCGGCCGCACGAACACTGTCGCTACCCATT
GAAAACTCCTCTCGTGTGCCCATGACGCGCTTCAGAAGGGCTCCTCCGTC
TAAATGGTTTTCTAGAAATTCCAATCACTCCCGTTCTGCTTCCTCCCGCT
CCAGTCGCATTCGTGCCTGGTTCGGCTCCAGAAGGTACCGAGATGTTGTC
ACCCAACCCGATGTGCCCACTCATCGACCGCAAAGCCTTCCATCGCTTCG
CCGCTCCGCTAGTCTCACCTCCTCTGAGCTCGACATAGACCGTCTTCATC
AACCCCCGGACAGGGAGGTGGTCAACAACCGCCCAACCTCATCTAATATG
CCGTCATCTCTCAGCCCCACATCGGCTACCCACACCAACTTCAACAAATC
CGCCGCCAATCCGCGTTCGCGCAGGCGTGCTGTGTACAAGGTCGTGGACT
CCCATATTCCTCGTCGTGTGCTCAAGCCACAAGCGCACTATGACAAGTCT
TCTTGGAATGCGTATCGCTCCCGCATTGACAAGCTTGCGGATGATGAACA
GTTTATGAACTATCTTACTGCCCCTGTGCAACGCCATCCACCGGTAAACG
TTCCGACCAACGATGGCGCTGCCAATGCGCAACAGCTTGCCGTAAACAAG
CTCTATCCACTCGCTTTCATAAAGCTGCTTGAGGCGCAGGCAAAGATGGC
TGCTGAGGAAGCGCCTCCTTGTGACCCGGCCGAAGAGCAACATCGTTACG
ATGACATTGATGGCAACGATGAGGCACGTATTGAGAGGACCACCTCCACT
GGTTTGCGAGACATGAAGAGGTTCAGGACCATATCATCTGAGAGCAGGCG
CAATCTATACAATGGACCGGCCACCATCTCGGGCTCGCTAGACCATGAGA
ATCATATCTCATCGACTCCTGTGCGCTTTTCGAGTCAGTGTTAG
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