Ggra2203.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2203.t1
Unique Name	Ggra2203.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	821

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:638152..640614 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	112098.XP_008616131.1
PFAMs	Lipase_3
Max annot lvl	2759\|Eukaryota
Evalue	2.11e-47
EggNOG OGs	KOG4569@1\|root,KOG4569@2759\|Eukaryota
Description	phospholipase A1 activity
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2203	Ggra2203	Gracilaria gracilis GNS1m male	gene	tig00000900_pilon 638152..640614 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2203.t1.stop1	Ggra2203.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000900_pilon 638152..638154 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2203.t1.CDS1	Ggra2203.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 638152..640614 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2203.t1.exon1	Ggra2203.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 638152..640614 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2203.t1.start1	Ggra2203.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000900_pilon 640612..640614 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2203.t1	Ggra2203.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000900_pilon 638152..640614 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000900_pilon:638152..640614-
coding sequence from alignment at tig00000900_pilon:638152..640614-

mRNA sequence

>Ggra2203.t1 ID=Ggra2203.t1|Name=Ggra2203.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=821bp
MSDDVENWNMVLNEDSPDVSQEVNSVRFIVPKIGSSHAQLAKPYDDFSIV
SSEDVDTRESYGFSAAPKEEAVSINLSAKTFTKLEVIGAEEVTKLLWWFH
GFILFGILFSIVFVVLANTVYLRLDSIRGTMVRYYNLPQTYEWVLSVANI
LCFFYAISLAIVFTSRMLRIRRIDRTHEQVWVILLTIAAAIYMNPYESIV
RIMITADYNLREERWYDPISRMYDSVRDASFTASTLFYVWATVHSYRVLA
GKLGIKFYVPKVLLVIMYMLLKQLAFWRFDIYMSEMPIASMVAMLHLYKT
LKFWPAKGVVFVTLVTGFELLLVAWIIREIRITRCFLKSKDYTKYRTKQI
GIRFFLYHNLTFYVVFWLCYLLLLLGLPSGAQLAAMKVFKVSYVEVQYVP
FGLSILYLSYVTLEAYMNLPSDAIGLKGWLRPQAPRLNGLLEPITYRKRE
PNSQLVQTNCFVMETHVIMFNFAWLVYYYDTPKMSKLNGMRNKFDYEVRK
VVSDEGTDTRALIVDGDDRIIVAFRGTSSGRNLRTDLKAFHVQLHRILPT
ASGENATRELFGSIAQEVLESRDAQQAKVHRGFAEAYLSVSDEVMHWIKE
LYDCDPRPVFLTGHSLGGALATICALDCALKYQLGTSDIYVATFGSPRVG
NSAFRKVYDELVPASWRVSIAADIVTTLPKVEYQHVGKKIMLTTAGDLFI
DPNSLELSMWSGDSLSFVHHRKASYLLAMRSWCNRHEKGAYRPLFWNWPF
SADDERRWPSAVLEDSRDEVRREHRRHLLHQDAMIDALNETKAENIEERA
VDHWSRLTRRLILNSAVHKT*

spliced messenger RNA

>Ggra2203.t1 ID=Ggra2203.t1|Name=Ggra2203.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2463bp|location=Sequence derived from alignment at tig00000900_pilon:638152..640614- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGATGATGTGGAAAACTGGAATATGGTCCTAAATGAAGACAGCCC
AGACGTTTCGCAAGAAGTGAATTCTGTCCGGTTCATTGTTCCAAAGATTG
GCTCATCTCATGCTCAGCTCGCTAAGCCTTACGACGATTTCTCCATTGTT
TCTTCAGAGGATGTGGACACCAGAGAAAGCTATGGATTCTCAGCAGCCCC
GAAAGAGGAAGCAGTTTCTATTAATCTCAGTGCCAAGACGTTCACCAAAC
TAGAAGTCATTGGTGCCGAAGAAGTTACAAAATTGCTGTGGTGGTTCCAT
GGGTTTATTCTGTTTGGTATATTATTCTCAATAGTGTTCGTCGTACTCGC
AAACACAGTTTATCTCCGTCTCGATTCTATTCGAGGGACGATGGTTCGCT
ATTACAATCTACCGCAGACCTACGAATGGGTGCTTTCTGTTGCAAACATT
TTGTGCTTCTTTTATGCAATATCTTTGGCTATCGTCTTTACATCTCGAAT
GCTTCGTATTCGCCGAATAGATCGAACCCATGAACAAGTCTGGGTGATTC
TATTAACTATTGCGGCGGCTATCTACATGAATCCCTATGAGAGTATTGTC
CGTATTATGATCACTGCGGATTATAACCTTCGAGAGGAAAGATGGTATGA
CCCTATTTCCCGAATGTATGATTCCGTACGAGATGCGTCGTTTACAGCGA
GCACGCTCTTCTATGTGTGGGCAACGGTGCATTCTTATCGTGTTCTGGCT
GGGAAACTTGGAATCAAGTTTTATGTTCCGAAAGTGCTTTTGGTCATTAT
GTACATGTTGCTCAAGCAGTTGGCGTTTTGGCGATTTGATATTTACATGT
CAGAAATGCCGATTGCATCTATGGTAGCAATGCTACATCTTTACAAAACT
CTAAAGTTCTGGCCTGCGAAAGGGGTGGTATTTGTGACTCTAGTCACTGG
GTTTGAGTTACTTCTCGTGGCATGGATCATCCGAGAGATTCGAATCACTC
GATGTTTCTTGAAAAGCAAAGACTATACAAAGTATCGTACAAAGCAAATT
GGAATTCGATTCTTCTTGTATCACAACCTAACGTTTTACGTAGTCTTCTG
GTTATGCTATTTATTGTTACTTCTAGGACTTCCTTCGGGTGCACAATTGG
CTGCAATGAAGGTTTTCAAGGTTTCCTACGTTGAAGTTCAATATGTTCCA
TTCGGGTTGTCTATCCTATATCTTTCTTATGTCACACTAGAAGCTTATAT
GAATTTGCCTTCCGATGCCATTGGTCTGAAAGGTTGGCTTCGTCCACAAG
CACCGAGATTAAATGGACTTCTAGAACCCATTACCTACCGAAAGCGGGAA
CCGAATTCGCAGCTGGTACAAACAAATTGTTTTGTTATGGAAACTCACGT
TATCATGTTCAATTTCGCATGGCTTGTGTATTACTACGACACTCCAAAAA
TGTCGAAGCTCAATGGTATGCGGAACAAATTTGATTACGAAGTACGGAAG
GTTGTAAGTGACGAAGGAACAGATACACGTGCTTTGATAGTTGATGGTGA
TGACCGAATCATTGTTGCTTTTCGAGGGACAAGCAGTGGTCGCAACTTGC
GCACTGATCTAAAAGCCTTCCACGTCCAGCTACACCGTATACTTCCGACT
GCTTCAGGAGAAAACGCAACTAGAGAGCTTTTCGGGAGCATTGCACAGGA
GGTTCTTGAAAGCCGTGATGCTCAACAGGCGAAGGTCCATCGTGGGTTTG
CAGAGGCATACTTGAGCGTTTCCGATGAGGTTATGCATTGGATCAAAGAA
CTTTACGATTGCGATCCTCGTCCAGTTTTTCTTACGGGTCACAGCCTAGG
TGGAGCACTAGCCACTATTTGCGCTCTTGACTGTGCACTGAAGTACCAGC
TGGGCACAAGCGATATTTACGTCGCAACTTTTGGCTCCCCCAGGGTAGGA
AATTCAGCATTCAGGAAAGTGTACGACGAACTTGTTCCTGCTTCATGGCG
GGTATCAATCGCTGCAGATATAGTTACAACTCTACCAAAAGTGGAATACC
AACATGTTGGAAAAAAGATAATGCTCACTACTGCCGGAGACTTATTTATT
GATCCCAACTCCTTGGAACTTTCAATGTGGAGTGGCGATTCATTATCGTT
TGTACATCACCGGAAAGCTTCGTATCTCCTTGCAATGCGGTCGTGGTGCA
ACCGCCACGAGAAAGGAGCCTACAGACCCCTGTTTTGGAATTGGCCGTTT
TCTGCTGATGACGAGAGGCGATGGCCATCTGCGGTTTTAGAAGATTCAAG
AGATGAGGTTCGTCGCGAACACCGTCGTCATCTCCTTCATCAAGACGCAA
TGATTGATGCTCTCAATGAAACGAAGGCGGAGAACATCGAAGAACGAGCT
GTTGATCATTGGTCAAGATTGACCAGACGCCTTATTCTTAATAGCGCTGT
ACATAAGACTTAG

protein sequence of Ggra2203.t1

>Ggra2203.t1 ID=Ggra2203.t1|Name=Ggra2203.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=821bp
MSDDVENWNMVLNEDSPDVSQEVNSVRFIVPKIGSSHAQLAKPYDDFSIV
SSEDVDTRESYGFSAAPKEEAVSINLSAKTFTKLEVIGAEEVTKLLWWFH
GFILFGILFSIVFVVLANTVYLRLDSIRGTMVRYYNLPQTYEWVLSVANI
LCFFYAISLAIVFTSRMLRIRRIDRTHEQVWVILLTIAAAIYMNPYESIV
RIMITADYNLREERWYDPISRMYDSVRDASFTASTLFYVWATVHSYRVLA
GKLGIKFYVPKVLLVIMYMLLKQLAFWRFDIYMSEMPIASMVAMLHLYKT
LKFWPAKGVVFVTLVTGFELLLVAWIIREIRITRCFLKSKDYTKYRTKQI
GIRFFLYHNLTFYVVFWLCYLLLLLGLPSGAQLAAMKVFKVSYVEVQYVP
FGLSILYLSYVTLEAYMNLPSDAIGLKGWLRPQAPRLNGLLEPITYRKRE
PNSQLVQTNCFVMETHVIMFNFAWLVYYYDTPKMSKLNGMRNKFDYEVRK
VVSDEGTDTRALIVDGDDRIIVAFRGTSSGRNLRTDLKAFHVQLHRILPT
ASGENATRELFGSIAQEVLESRDAQQAKVHRGFAEAYLSVSDEVMHWIKE
LYDCDPRPVFLTGHSLGGALATICALDCALKYQLGTSDIYVATFGSPRVG
NSAFRKVYDELVPASWRVSIAADIVTTLPKVEYQHVGKKIMLTTAGDLFI
DPNSLELSMWSGDSLSFVHHRKASYLLAMRSWCNRHEKGAYRPLFWNWPF
SADDERRWPSAVLEDSRDEVRREHRRHLLHQDAMIDALNETKAENIEERA
VDHWSRLTRRLILNSAVHKT*

mRNA from alignment at tig00000900_pilon:638152..640614-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2203.t1 ID=Ggra2203.t1|Name=Ggra2203.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2463bp|location=Sequence derived from alignment at tig00000900_pilon:638152..640614- (Gracilaria gracilis GNS1m male)
ATGTCCGATGATGTGGAAAACTGGAATATGGTCCTAAATGAAGACAGCCC
AGACGTTTCGCAAGAAGTGAATTCTGTCCGGTTCATTGTTCCAAAGATTG
GCTCATCTCATGCTCAGCTCGCTAAGCCTTACGACGATTTCTCCATTGTT
TCTTCAGAGGATGTGGACACCAGAGAAAGCTATGGATTCTCAGCAGCCCC
GAAAGAGGAAGCAGTTTCTATTAATCTCAGTGCCAAGACGTTCACCAAAC
TAGAAGTCATTGGTGCCGAAGAAGTTACAAAATTGCTGTGGTGGTTCCAT
GGGTTTATTCTGTTTGGTATATTATTCTCAATAGTGTTCGTCGTACTCGC
AAACACAGTTTATCTCCGTCTCGATTCTATTCGAGGGACGATGGTTCGCT
ATTACAATCTACCGCAGACCTACGAATGGGTGCTTTCTGTTGCAAACATT
TTGTGCTTCTTTTATGCAATATCTTTGGCTATCGTCTTTACATCTCGAAT
GCTTCGTATTCGCCGAATAGATCGAACCCATGAACAAGTCTGGGTGATTC
TATTAACTATTGCGGCGGCTATCTACATGAATCCCTATGAGAGTATTGTC
CGTATTATGATCACTGCGGATTATAACCTTCGAGAGGAAAGATGGTATGA
CCCTATTTCCCGAATGTATGATTCCGTACGAGATGCGTCGTTTACAGCGA
GCACGCTCTTCTATGTGTGGGCAACGGTGCATTCTTATCGTGTTCTGGCT
GGGAAACTTGGAATCAAGTTTTATGTTCCGAAAGTGCTTTTGGTCATTAT
GTACATGTTGCTCAAGCAGTTGGCGTTTTGGCGATTTGATATTTACATGT
CAGAAATGCCGATTGCATCTATGGTAGCAATGCTACATCTTTACAAAACT
CTAAAGTTCTGGCCTGCGAAAGGGGTGGTATTTGTGACTCTAGTCACTGG
GTTTGAGTTACTTCTCGTGGCATGGATCATCCGAGAGATTCGAATCACTC
GATGTTTCTTGAAAAGCAAAGACTATACAAAGTATCGTACAAAGCAAATT
GGAATTCGATTCTTCTTGTATCACAACCTAACGTTTTACGTAGTCTTCTG
GTTATGCTATTTATTGTTACTTCTAGGACTTCCTTCGGGTGCACAATTGG
CTGCAATGAAGGTTTTCAAGGTTTCCTACGTTGAAGTTCAATATGTTCCA
TTCGGGTTGTCTATCCTATATCTTTCTTATGTCACACTAGAAGCTTATAT
GAATTTGCCTTCCGATGCCATTGGTCTGAAAGGTTGGCTTCGTCCACAAG
CACCGAGATTAAATGGACTTCTAGAACCCATTACCTACCGAAAGCGGGAA
CCGAATTCGCAGCTGGTACAAACAAATTGTTTTGTTATGGAAACTCACGT
TATCATGTTCAATTTCGCATGGCTTGTGTATTACTACGACACTCCAAAAA
TGTCGAAGCTCAATGGTATGCGGAACAAATTTGATTACGAAGTACGGAAG
GTTGTAAGTGACGAAGGAACAGATACACGTGCTTTGATAGTTGATGGTGA
TGACCGAATCATTGTTGCTTTTCGAGGGACAAGCAGTGGTCGCAACTTGC
GCACTGATCTAAAAGCCTTCCACGTCCAGCTACACCGTATACTTCCGACT
GCTTCAGGAGAAAACGCAACTAGAGAGCTTTTCGGGAGCATTGCACAGGA
GGTTCTTGAAAGCCGTGATGCTCAACAGGCGAAGGTCCATCGTGGGTTTG
CAGAGGCATACTTGAGCGTTTCCGATGAGGTTATGCATTGGATCAAAGAA
CTTTACGATTGCGATCCTCGTCCAGTTTTTCTTACGGGTCACAGCCTAGG
TGGAGCACTAGCCACTATTTGCGCTCTTGACTGTGCACTGAAGTACCAGC
TGGGCACAAGCGATATTTACGTCGCAACTTTTGGCTCCCCCAGGGTAGGA
AATTCAGCATTCAGGAAAGTGTACGACGAACTTGTTCCTGCTTCATGGCG
GGTATCAATCGCTGCAGATATAGTTACAACTCTACCAAAAGTGGAATACC
AACATGTTGGAAAAAAGATAATGCTCACTACTGCCGGAGACTTATTTATT
GATCCCAACTCCTTGGAACTTTCAATGTGGAGTGGCGATTCATTATCGTT
TGTACATCACCGGAAAGCTTCGTATCTCCTTGCAATGCGGTCGTGGTGCA
ACCGCCACGAGAAAGGAGCCTACAGACCCCTGTTTTGGAATTGGCCGTTT
TCTGCTGATGACGAGAGGCGATGGCCATCTGCGGTTTTAGAAGATTCAAG
AGATGAGGTTCGTCGCGAACACCGTCGTCATCTCCTTCATCAAGACGCAA
TGATTGATGCTCTCAATGAAACGAAGGCGGAGAACATCGAAGAACGAGCT
GTTGATCATTGGTCAAGATTGACCAGACGCCTTATTCTTAATAGCGCTGT
ACATAAGACTTAG

Coding sequence (CDS) from alignment at tig00000900_pilon:638152..640614-

>Ggra2203.t1 ID=Ggra2203.t1|Name=Ggra2203.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2463bp|location=Sequence derived from alignment at tig00000900_pilon:638152..640614- (Gracilaria gracilis GNS1m male)
ATGTCCGATGATGTGGAAAACTGGAATATGGTCCTAAATGAAGACAGCCC
AGACGTTTCGCAAGAAGTGAATTCTGTCCGGTTCATTGTTCCAAAGATTG
GCTCATCTCATGCTCAGCTCGCTAAGCCTTACGACGATTTCTCCATTGTT
TCTTCAGAGGATGTGGACACCAGAGAAAGCTATGGATTCTCAGCAGCCCC
GAAAGAGGAAGCAGTTTCTATTAATCTCAGTGCCAAGACGTTCACCAAAC
TAGAAGTCATTGGTGCCGAAGAAGTTACAAAATTGCTGTGGTGGTTCCAT
GGGTTTATTCTGTTTGGTATATTATTCTCAATAGTGTTCGTCGTACTCGC
AAACACAGTTTATCTCCGTCTCGATTCTATTCGAGGGACGATGGTTCGCT
ATTACAATCTACCGCAGACCTACGAATGGGTGCTTTCTGTTGCAAACATT
TTGTGCTTCTTTTATGCAATATCTTTGGCTATCGTCTTTACATCTCGAAT
GCTTCGTATTCGCCGAATAGATCGAACCCATGAACAAGTCTGGGTGATTC
TATTAACTATTGCGGCGGCTATCTACATGAATCCCTATGAGAGTATTGTC
CGTATTATGATCACTGCGGATTATAACCTTCGAGAGGAAAGATGGTATGA
CCCTATTTCCCGAATGTATGATTCCGTACGAGATGCGTCGTTTACAGCGA
GCACGCTCTTCTATGTGTGGGCAACGGTGCATTCTTATCGTGTTCTGGCT
GGGAAACTTGGAATCAAGTTTTATGTTCCGAAAGTGCTTTTGGTCATTAT
GTACATGTTGCTCAAGCAGTTGGCGTTTTGGCGATTTGATATTTACATGT
CAGAAATGCCGATTGCATCTATGGTAGCAATGCTACATCTTTACAAAACT
CTAAAGTTCTGGCCTGCGAAAGGGGTGGTATTTGTGACTCTAGTCACTGG
GTTTGAGTTACTTCTCGTGGCATGGATCATCCGAGAGATTCGAATCACTC
GATGTTTCTTGAAAAGCAAAGACTATACAAAGTATCGTACAAAGCAAATT
GGAATTCGATTCTTCTTGTATCACAACCTAACGTTTTACGTAGTCTTCTG
GTTATGCTATTTATTGTTACTTCTAGGACTTCCTTCGGGTGCACAATTGG
CTGCAATGAAGGTTTTCAAGGTTTCCTACGTTGAAGTTCAATATGTTCCA
TTCGGGTTGTCTATCCTATATCTTTCTTATGTCACACTAGAAGCTTATAT
GAATTTGCCTTCCGATGCCATTGGTCTGAAAGGTTGGCTTCGTCCACAAG
CACCGAGATTAAATGGACTTCTAGAACCCATTACCTACCGAAAGCGGGAA
CCGAATTCGCAGCTGGTACAAACAAATTGTTTTGTTATGGAAACTCACGT
TATCATGTTCAATTTCGCATGGCTTGTGTATTACTACGACACTCCAAAAA
TGTCGAAGCTCAATGGTATGCGGAACAAATTTGATTACGAAGTACGGAAG
GTTGTAAGTGACGAAGGAACAGATACACGTGCTTTGATAGTTGATGGTGA
TGACCGAATCATTGTTGCTTTTCGAGGGACAAGCAGTGGTCGCAACTTGC
GCACTGATCTAAAAGCCTTCCACGTCCAGCTACACCGTATACTTCCGACT
GCTTCAGGAGAAAACGCAACTAGAGAGCTTTTCGGGAGCATTGCACAGGA
GGTTCTTGAAAGCCGTGATGCTCAACAGGCGAAGGTCCATCGTGGGTTTG
CAGAGGCATACTTGAGCGTTTCCGATGAGGTTATGCATTGGATCAAAGAA
CTTTACGATTGCGATCCTCGTCCAGTTTTTCTTACGGGTCACAGCCTAGG
TGGAGCACTAGCCACTATTTGCGCTCTTGACTGTGCACTGAAGTACCAGC
TGGGCACAAGCGATATTTACGTCGCAACTTTTGGCTCCCCCAGGGTAGGA
AATTCAGCATTCAGGAAAGTGTACGACGAACTTGTTCCTGCTTCATGGCG
GGTATCAATCGCTGCAGATATAGTTACAACTCTACCAAAAGTGGAATACC
AACATGTTGGAAAAAAGATAATGCTCACTACTGCCGGAGACTTATTTATT
GATCCCAACTCCTTGGAACTTTCAATGTGGAGTGGCGATTCATTATCGTT
TGTACATCACCGGAAAGCTTCGTATCTCCTTGCAATGCGGTCGTGGTGCA
ACCGCCACGAGAAAGGAGCCTACAGACCCCTGTTTTGGAATTGGCCGTTT
TCTGCTGATGACGAGAGGCGATGGCCATCTGCGGTTTTAGAAGATTCAAG
AGATGAGGTTCGTCGCGAACACCGTCGTCATCTCCTTCATCAAGACGCAA
TGATTGATGCTCTCAATGAAACGAAGGCGGAGAACATCGAAGAACGAGCT
GTTGATCATTGGTCAAGATTGACCAGACGCCTTATTCTTAATAGCGCTGT
ACATAAGACTTAG