Ggra2200.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2200.t1
Unique Name	Ggra2200.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	455

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:620077..621441 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	402777.KB235904_gene3980
Preferred name	ctpB
PFAMs	PDZ,PDZ_2,Peptidase_S41
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K03797
Evalue	3.59e-63
EggNOG OGs	COG0793@1\|root,COG0793@2\|Bacteria,1G031@1117\|Cyanobacteria,1H91G@1150\|Oscillatoriales
EC	3.4.21.102
Description	Belongs to the peptidase S41A family
COG category	M
BRITE	ko00000,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2200	Ggra2200	Gracilaria gracilis GNS1m male	gene	tig00000900_pilon 620077..621441 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2200.t1.start1	Ggra2200.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000900_pilon 620077..620079 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2200.t1.CDS1	Ggra2200.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 620077..621441 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2200.t1.exon1	Ggra2200.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 620077..621441 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2200.t1.stop1	Ggra2200.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000900_pilon 621439..621441 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2200.t1	Ggra2200.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000900_pilon 620077..621441 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000900_pilon:620077..621441+
coding sequence from alignment at tig00000900_pilon:620077..621441+

mRNA sequence

>Ggra2200.t1 ID=Ggra2200.t1|Name=Ggra2200.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=455bp
MYRPKISFVCPTASAFSLPFRKVAVSTALAAALYSLPAHPVRAAPAIDVT
RDPEHEFAEQAWKFVNDYYLDPSFNHLDWQSQLEKLLNSPLPDRASTYRS
LRKAVSRLDDRYTRVLDPKQMELLRKFDVSGVGLLLTNDASGRLIVAIEP
PKDTAAGKAGVKRGDQVLEVEGRDVSDVSPFEVAEWMQGPDGSAMQVRFR
DIGDTTLTRRYQAERSAAAVTKVTTVDRPDGRMGYIRLSEFRASGRAEVS
KALQRLLADGAEWIVIDLRGNHGGVFEGALEIAGLLEGEGRTVAHVSGRN
TREGGLQESYKSRVVKGEHVIDDKIDLAVLIDDESASSSEVLAGGLRDSC
RAALVGEKSFGKGVIQGVFGLSDGGGIVITIAEYRTPRGDKIDGIGIPAD
LPVKYEGLDMFLQYLGITRTDEKGVKVSREQVRNVTRSCRERFNSPEITS
VNTM*

spliced messenger RNA

>Ggra2200.t1 ID=Ggra2200.t1|Name=Ggra2200.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00000900_pilon:620077..621441+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATCGACCTAAGATTTCATTCGTTTGTCCAACGGCCTCGGCGTTTAG
CCTGCCATTTCGGAAAGTGGCTGTTTCCACCGCCTTAGCCGCTGCCTTAT
ATTCTCTGCCAGCGCATCCCGTTCGAGCCGCGCCAGCCATTGACGTCACA
AGAGATCCGGAACATGAATTTGCTGAGCAAGCATGGAAGTTTGTCAACGA
TTACTACCTAGACCCCTCCTTTAATCATTTAGACTGGCAAAGCCAGTTAG
AAAAGCTTCTTAATTCTCCATTACCTGACCGAGCTTCAACTTATAGATCA
TTAAGGAAAGCCGTTTCAAGACTAGATGACCGCTACACCCGTGTACTTGA
CCCGAAACAAATGGAACTACTCAGAAAATTTGATGTATCCGGTGTTGGTC
TTCTTCTGACGAACGATGCGTCTGGCCGTCTCATTGTTGCGATAGAACCG
CCGAAGGACACTGCAGCCGGCAAAGCTGGTGTCAAACGGGGCGATCAGGT
TCTGGAAGTTGAAGGTCGGGATGTATCCGATGTTTCACCTTTTGAAGTTG
CTGAATGGATGCAAGGACCAGATGGCAGCGCTATGCAAGTACGATTTCGA
GATATTGGAGATACAACTCTGACTCGTAGATATCAAGCAGAAAGATCCGC
TGCAGCTGTAACAAAGGTTACGACTGTTGATCGTCCAGATGGGCGCATGG
GCTACATTCGTCTGTCTGAGTTTCGAGCATCCGGTCGTGCGGAAGTTTCA
AAGGCGTTGCAACGACTTTTGGCAGATGGTGCTGAATGGATCGTTATTGA
TTTGCGAGGAAATCATGGTGGGGTTTTCGAAGGCGCTTTAGAGATTGCCG
GGTTGTTAGAGGGTGAGGGTCGTACCGTCGCCCATGTGAGTGGCCGGAAC
ACCCGCGAGGGAGGCCTGCAAGAGTCGTATAAATCCCGAGTTGTCAAAGG
GGAACATGTAATTGACGATAAGATCGACCTTGCTGTTTTGATCGATGACG
AAAGTGCAAGTAGTAGCGAAGTTTTGGCAGGAGGCCTTCGAGATAGTTGC
AGAGCAGCTCTTGTGGGTGAAAAGAGCTTTGGGAAAGGCGTCATCCAAGG
AGTGTTTGGGCTGTCAGATGGTGGGGGAATCGTGATTACGATTGCAGAGT
ATCGGACCCCAAGGGGTGATAAAATTGATGGTATCGGGATTCCAGCCGAT
CTCCCTGTGAAATATGAGGGCTTGGATATGTTCCTGCAGTACCTTGGGAT
AACAAGAACAGATGAAAAGGGAGTTAAGGTTTCAAGGGAACAAGTAAGAA
ATGTAACCCGATCCTGTCGGGAACGGTTCAATAGTCCAGAAATAACATCA
GTCAATACTATGTAA

protein sequence of Ggra2200.t1

>Ggra2200.t1 ID=Ggra2200.t1|Name=Ggra2200.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=455bp
MYRPKISFVCPTASAFSLPFRKVAVSTALAAALYSLPAHPVRAAPAIDVT
RDPEHEFAEQAWKFVNDYYLDPSFNHLDWQSQLEKLLNSPLPDRASTYRS
LRKAVSRLDDRYTRVLDPKQMELLRKFDVSGVGLLLTNDASGRLIVAIEP
PKDTAAGKAGVKRGDQVLEVEGRDVSDVSPFEVAEWMQGPDGSAMQVRFR
DIGDTTLTRRYQAERSAAAVTKVTTVDRPDGRMGYIRLSEFRASGRAEVS
KALQRLLADGAEWIVIDLRGNHGGVFEGALEIAGLLEGEGRTVAHVSGRN
TREGGLQESYKSRVVKGEHVIDDKIDLAVLIDDESASSSEVLAGGLRDSC
RAALVGEKSFGKGVIQGVFGLSDGGGIVITIAEYRTPRGDKIDGIGIPAD
LPVKYEGLDMFLQYLGITRTDEKGVKVSREQVRNVTRSCRERFNSPEITS
VNTM*

mRNA from alignment at tig00000900_pilon:620077..621441+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2200.t1 ID=Ggra2200.t1|Name=Ggra2200.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00000900_pilon:620077..621441+ (Gracilaria gracilis GNS1m male)
ATGTATCGACCTAAGATTTCATTCGTTTGTCCAACGGCCTCGGCGTTTAG
CCTGCCATTTCGGAAAGTGGCTGTTTCCACCGCCTTAGCCGCTGCCTTAT
ATTCTCTGCCAGCGCATCCCGTTCGAGCCGCGCCAGCCATTGACGTCACA
AGAGATCCGGAACATGAATTTGCTGAGCAAGCATGGAAGTTTGTCAACGA
TTACTACCTAGACCCCTCCTTTAATCATTTAGACTGGCAAAGCCAGTTAG
AAAAGCTTCTTAATTCTCCATTACCTGACCGAGCTTCAACTTATAGATCA
TTAAGGAAAGCCGTTTCAAGACTAGATGACCGCTACACCCGTGTACTTGA
CCCGAAACAAATGGAACTACTCAGAAAATTTGATGTATCCGGTGTTGGTC
TTCTTCTGACGAACGATGCGTCTGGCCGTCTCATTGTTGCGATAGAACCG
CCGAAGGACACTGCAGCCGGCAAAGCTGGTGTCAAACGGGGCGATCAGGT
TCTGGAAGTTGAAGGTCGGGATGTATCCGATGTTTCACCTTTTGAAGTTG
CTGAATGGATGCAAGGACCAGATGGCAGCGCTATGCAAGTACGATTTCGA
GATATTGGAGATACAACTCTGACTCGTAGATATCAAGCAGAAAGATCCGC
TGCAGCTGTAACAAAGGTTACGACTGTTGATCGTCCAGATGGGCGCATGG
GCTACATTCGTCTGTCTGAGTTTCGAGCATCCGGTCGTGCGGAAGTTTCA
AAGGCGTTGCAACGACTTTTGGCAGATGGTGCTGAATGGATCGTTATTGA
TTTGCGAGGAAATCATGGTGGGGTTTTCGAAGGCGCTTTAGAGATTGCCG
GGTTGTTAGAGGGTGAGGGTCGTACCGTCGCCCATGTGAGTGGCCGGAAC
ACCCGCGAGGGAGGCCTGCAAGAGTCGTATAAATCCCGAGTTGTCAAAGG
GGAACATGTAATTGACGATAAGATCGACCTTGCTGTTTTGATCGATGACG
AAAGTGCAAGTAGTAGCGAAGTTTTGGCAGGAGGCCTTCGAGATAGTTGC
AGAGCAGCTCTTGTGGGTGAAAAGAGCTTTGGGAAAGGCGTCATCCAAGG
AGTGTTTGGGCTGTCAGATGGTGGGGGAATCGTGATTACGATTGCAGAGT
ATCGGACCCCAAGGGGTGATAAAATTGATGGTATCGGGATTCCAGCCGAT
CTCCCTGTGAAATATGAGGGCTTGGATATGTTCCTGCAGTACCTTGGGAT
AACAAGAACAGATGAAAAGGGAGTTAAGGTTTCAAGGGAACAAGTAAGAA
ATGTAACCCGATCCTGTCGGGAACGGTTCAATAGTCCAGAAATAACATCA
GTCAATACTATGTAA

Coding sequence (CDS) from alignment at tig00000900_pilon:620077..621441+

>Ggra2200.t1 ID=Ggra2200.t1|Name=Ggra2200.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1365bp|location=Sequence derived from alignment at tig00000900_pilon:620077..621441+ (Gracilaria gracilis GNS1m male)
ATGTATCGACCTAAGATTTCATTCGTTTGTCCAACGGCCTCGGCGTTTAG
CCTGCCATTTCGGAAAGTGGCTGTTTCCACCGCCTTAGCCGCTGCCTTAT
ATTCTCTGCCAGCGCATCCCGTTCGAGCCGCGCCAGCCATTGACGTCACA
AGAGATCCGGAACATGAATTTGCTGAGCAAGCATGGAAGTTTGTCAACGA
TTACTACCTAGACCCCTCCTTTAATCATTTAGACTGGCAAAGCCAGTTAG
AAAAGCTTCTTAATTCTCCATTACCTGACCGAGCTTCAACTTATAGATCA
TTAAGGAAAGCCGTTTCAAGACTAGATGACCGCTACACCCGTGTACTTGA
CCCGAAACAAATGGAACTACTCAGAAAATTTGATGTATCCGGTGTTGGTC
TTCTTCTGACGAACGATGCGTCTGGCCGTCTCATTGTTGCGATAGAACCG
CCGAAGGACACTGCAGCCGGCAAAGCTGGTGTCAAACGGGGCGATCAGGT
TCTGGAAGTTGAAGGTCGGGATGTATCCGATGTTTCACCTTTTGAAGTTG
CTGAATGGATGCAAGGACCAGATGGCAGCGCTATGCAAGTACGATTTCGA
GATATTGGAGATACAACTCTGACTCGTAGATATCAAGCAGAAAGATCCGC
TGCAGCTGTAACAAAGGTTACGACTGTTGATCGTCCAGATGGGCGCATGG
GCTACATTCGTCTGTCTGAGTTTCGAGCATCCGGTCGTGCGGAAGTTTCA
AAGGCGTTGCAACGACTTTTGGCAGATGGTGCTGAATGGATCGTTATTGA
TTTGCGAGGAAATCATGGTGGGGTTTTCGAAGGCGCTTTAGAGATTGCCG
GGTTGTTAGAGGGTGAGGGTCGTACCGTCGCCCATGTGAGTGGCCGGAAC
ACCCGCGAGGGAGGCCTGCAAGAGTCGTATAAATCCCGAGTTGTCAAAGG
GGAACATGTAATTGACGATAAGATCGACCTTGCTGTTTTGATCGATGACG
AAAGTGCAAGTAGTAGCGAAGTTTTGGCAGGAGGCCTTCGAGATAGTTGC
AGAGCAGCTCTTGTGGGTGAAAAGAGCTTTGGGAAAGGCGTCATCCAAGG
AGTGTTTGGGCTGTCAGATGGTGGGGGAATCGTGATTACGATTGCAGAGT
ATCGGACCCCAAGGGGTGATAAAATTGATGGTATCGGGATTCCAGCCGAT
CTCCCTGTGAAATATGAGGGCTTGGATATGTTCCTGCAGTACCTTGGGAT
AACAAGAACAGATGAAAAGGGAGTTAAGGTTTCAAGGGAACAAGTAAGAA
ATGTAACCCGATCCTGTCGGGAACGGTTCAATAGTCCAGAAATAACATCA
GTCAATACTATGTAA