Ggra2199.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2199.t1
Unique NameGgra2199.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length835
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:616868..619372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog246197.MXAN_5281
Max annot lvl28221|Deltaproteobacteria
Evalue3.64e-71
EggNOG OGs28HSN@1|root,2Z7ZT@2|Bacteria,1QPV9@1224|Proteobacteria,437IT@68525|delta/epsilon subdivisions,2X43W@28221|Deltaproteobacteria,2YY6P@29|Myxococcales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2199Ggra2199Gracilaria gracilis GNS1m malegenetig00000900_pilon 616868..619372 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2199.t1.start1Ggra2199.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 616868..616870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2199.t1.CDS1Ggra2199.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 616868..619372 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2199.t1.exon1Ggra2199.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 616868..619372 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2199.t1.stop1Ggra2199.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 619370..619372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2199.t1Ggra2199.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 616868..619372 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2199.t1 ID=Ggra2199.t1|Name=Ggra2199.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=835bp
MNTNAGCICCDSGYALSERQSEKFRQWLECLHNIVSGDVRIGSRTPLRDK
PIFLTPEVLPGGFANGRLMAGGDLAPFEQELVNKNGWNFSNLSNEYRVQL
QNLRKSLNKYFLSPKGLGELFDLLKSGKYHCVYPEEAALLAVLWMLERRD
FELARGLVSTIAPYFGDVRFYPHPSSAPKSLDLKCSLLTVGAFKRGVSDM
RVSHGSLSYAINKLIVEDCAPSYDRLVSLILATCKKGAFDLIPFEARPSN
KMVAAFKILFRRFENVQRMYESFLHLAKRPKKELRQLGESRNCGKLLRFS
KAFVERKTKRITRIERSEAQRIIIQIRDRSRRGLPSVWTPGQDFSNAETR
LDELPRKLKIFRERQRKTTLAEHQLVSHDWKELSLNRVTKPSVDDQTGID
DVGPMTQPVTRREAERHGFTRGTAIPPLICRMVRMLERQPLKAMFERELV
PSMEVLAILVDQILGAAQAQTQGPIETRRLYASLLGAFRNRRSLLLFDYE
SQVKFEELPWVHRLEEVRREHDDADDRDKSQLLCEMVKLCISKWPDVMIP
NKMITALDHMARGFSISTADGPWIGLLPELAADIFMGGFTPKWCLHAALA
RKLLASSLYAKYYGTELRKSLWDGMDQIQVDARHKCRQFTSLCTKRGEKQ
KMQGYVARNRAVIEESMILTGQNYPYLLEVLDYHGKGFDSKELLEICVKC
FQNLKQTMIPALADKTPWQTRTRITKNVAYGWRQLVILVSSMDTKDVEHF
FRQTISLEEAVGGCTLQRALVDLRAVWMAMQNEAWTGRPWKPLRGWHSGQ
HSLWDKLWCERLRNRAGSRHDSHVRSGDLTLLRV*
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spliced messenger RNA

>Ggra2199.t1 ID=Ggra2199.t1|Name=Ggra2199.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2505bp|location=Sequence derived from alignment at tig00000900_pilon:616868..619372+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACACAAACGCAGGATGCATTTGCTGCGATAGTGGATACGCTCTCTC
GGAGAGGCAATCGGAAAAATTCCGACAGTGGTTGGAATGCCTTCACAACA
TTGTGAGCGGAGATGTTAGAATTGGTTCACGAACGCCACTACGGGACAAG
CCCATCTTTCTGACCCCCGAAGTTCTCCCCGGGGGATTTGCAAATGGTCG
CCTCATGGCGGGAGGTGACCTCGCCCCTTTTGAACAAGAGTTGGTCAACA
AGAATGGCTGGAATTTTTCTAATCTATCCAACGAATACCGAGTCCAGTTG
CAGAACTTGAGAAAGTCTTTGAACAAATACTTCTTGTCCCCGAAAGGATT
GGGAGAACTATTCGACTTGCTCAAATCTGGAAAGTATCATTGCGTTTATC
CAGAAGAGGCAGCACTTCTTGCTGTGCTATGGATGTTAGAACGCCGAGAT
TTCGAGCTTGCACGTGGACTGGTGAGTACTATTGCACCCTACTTTGGGGA
TGTACGTTTCTACCCCCACCCATCGTCGGCTCCTAAATCTCTGGACCTGA
AGTGCAGCTTGCTCACTGTGGGTGCTTTCAAGCGTGGAGTTTCAGACATG
CGAGTGTCGCACGGTAGCCTTTCGTATGCCATAAACAAGCTAATTGTGGA
GGACTGCGCTCCGAGCTATGACAGGCTCGTATCGCTGATACTAGCCACAT
GTAAGAAGGGAGCTTTTGACTTGATACCCTTCGAAGCTCGTCCTTCGAAC
AAAATGGTCGCTGCATTTAAGATCCTGTTCCGGCGCTTCGAGAACGTCCA
GAGAATGTATGAATCTTTCCTTCATCTAGCCAAGCGTCCAAAAAAAGAAC
TGCGGCAGCTTGGAGAATCGCGGAATTGCGGAAAACTGCTGAGGTTCTCA
AAGGCCTTTGTCGAAAGAAAGACAAAACGTATAACTCGAATTGAAAGGAG
TGAAGCGCAGAGGATAATCATTCAAATACGTGACAGGTCAAGGCGCGGAC
TGCCTTCGGTTTGGACACCGGGCCAGGACTTCAGTAACGCGGAAACTAGG
TTGGATGAACTTCCCCGTAAGCTGAAAATTTTCAGGGAGCGCCAAAGAAA
GACTACATTAGCAGAACACCAACTGGTTTCACATGACTGGAAGGAACTTT
CCTTGAATCGCGTTACTAAACCAAGTGTAGACGATCAAACTGGGATTGAT
GATGTTGGGCCAATGACCCAACCTGTTACCAGAAGAGAGGCAGAACGTCA
CGGGTTTACGCGTGGTACAGCCATACCCCCCTTGATTTGTCGCATGGTAA
GAATGCTTGAGAGACAACCTCTGAAAGCGATGTTTGAAAGAGAACTGGTG
CCATCTATGGAAGTTTTGGCTATCCTGGTAGATCAAATCTTAGGGGCGGC
ACAGGCTCAAACCCAAGGACCCATCGAAACGAGAAGACTTTATGCCTCGC
TTTTAGGAGCTTTTCGTAATCGCCGATCTCTACTCCTCTTTGATTATGAA
TCTCAAGTCAAGTTTGAAGAACTGCCTTGGGTTCATCGCCTGGAGGAGGT
TCGAAGAGAGCACGACGATGCAGACGATCGCGACAAATCTCAACTATTAT
GTGAGATGGTTAAATTATGTATATCAAAGTGGCCTGACGTAATGATTCCG
AATAAGATGATCACCGCTCTAGATCATATGGCCAGAGGTTTTTCAATATC
TACTGCTGATGGCCCTTGGATAGGACTCCTCCCAGAGTTGGCAGCAGATA
TATTCATGGGTGGATTCACCCCAAAATGGTGCTTGCATGCCGCTTTGGCG
AGGAAATTGCTGGCATCATCGCTTTACGCGAAGTACTACGGCACTGAACT
TCGTAAATCTCTTTGGGATGGGATGGATCAAATACAGGTCGATGCTCGTC
ATAAATGTCGTCAATTCACGTCGTTGTGTACAAAACGGGGCGAGAAACAA
AAAATGCAGGGGTACGTAGCCCGAAACCGAGCTGTTATCGAGGAATCTAT
GATACTCACGGGTCAAAACTACCCATACCTCCTTGAAGTGCTGGATTATC
ATGGGAAAGGGTTTGATAGCAAAGAGCTCTTAGAGATCTGTGTGAAGTGC
TTCCAAAATTTGAAGCAAACGATGATCCCAGCTTTGGCCGATAAGACTCC
CTGGCAAACACGCACGCGAATAACTAAAAATGTCGCTTACGGTTGGCGTC
AACTTGTTATTCTGGTTTCATCAATGGACACTAAGGACGTGGAGCATTTC
TTTCGACAGACTATAAGCCTGGAGGAGGCTGTTGGTGGCTGCACTCTGCA
ACGGGCTCTGGTGGATCTAAGAGCGGTATGGATGGCTATGCAAAACGAAG
CCTGGACGGGACGTCCATGGAAGCCTCTTCGTGGGTGGCACAGCGGCCAG
CACAGTCTCTGGGACAAGTTGTGGTGTGAACGACTGAGGAACAGGGCAGG
CTCTCGTCATGACAGCCATGTCCGCAGTGGAGATTTGACGCTGTTAAGGG
TATGA
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protein sequence of Ggra2199.t1

>Ggra2199.t1 ID=Ggra2199.t1|Name=Ggra2199.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=835bp
MNTNAGCICCDSGYALSERQSEKFRQWLECLHNIVSGDVRIGSRTPLRDK
PIFLTPEVLPGGFANGRLMAGGDLAPFEQELVNKNGWNFSNLSNEYRVQL
QNLRKSLNKYFLSPKGLGELFDLLKSGKYHCVYPEEAALLAVLWMLERRD
FELARGLVSTIAPYFGDVRFYPHPSSAPKSLDLKCSLLTVGAFKRGVSDM
RVSHGSLSYAINKLIVEDCAPSYDRLVSLILATCKKGAFDLIPFEARPSN
KMVAAFKILFRRFENVQRMYESFLHLAKRPKKELRQLGESRNCGKLLRFS
KAFVERKTKRITRIERSEAQRIIIQIRDRSRRGLPSVWTPGQDFSNAETR
LDELPRKLKIFRERQRKTTLAEHQLVSHDWKELSLNRVTKPSVDDQTGID
DVGPMTQPVTRREAERHGFTRGTAIPPLICRMVRMLERQPLKAMFERELV
PSMEVLAILVDQILGAAQAQTQGPIETRRLYASLLGAFRNRRSLLLFDYE
SQVKFEELPWVHRLEEVRREHDDADDRDKSQLLCEMVKLCISKWPDVMIP
NKMITALDHMARGFSISTADGPWIGLLPELAADIFMGGFTPKWCLHAALA
RKLLASSLYAKYYGTELRKSLWDGMDQIQVDARHKCRQFTSLCTKRGEKQ
KMQGYVARNRAVIEESMILTGQNYPYLLEVLDYHGKGFDSKELLEICVKC
FQNLKQTMIPALADKTPWQTRTRITKNVAYGWRQLVILVSSMDTKDVEHF
FRQTISLEEAVGGCTLQRALVDLRAVWMAMQNEAWTGRPWKPLRGWHSGQ
HSLWDKLWCERLRNRAGSRHDSHVRSGDLTLLRV*
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mRNA from alignment at tig00000900_pilon:616868..619372+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2199.t1 ID=Ggra2199.t1|Name=Ggra2199.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2505bp|location=Sequence derived from alignment at tig00000900_pilon:616868..619372+ (Gracilaria gracilis GNS1m male)
ATGAACACAAACGCAGGATGCATTTGCTGCGATAGTGGATACGCTCTCTC GGAGAGGCAATCGGAAAAATTCCGACAGTGGTTGGAATGCCTTCACAACA TTGTGAGCGGAGATGTTAGAATTGGTTCACGAACGCCACTACGGGACAAG CCCATCTTTCTGACCCCCGAAGTTCTCCCCGGGGGATTTGCAAATGGTCG CCTCATGGCGGGAGGTGACCTCGCCCCTTTTGAACAAGAGTTGGTCAACA AGAATGGCTGGAATTTTTCTAATCTATCCAACGAATACCGAGTCCAGTTG CAGAACTTGAGAAAGTCTTTGAACAAATACTTCTTGTCCCCGAAAGGATT GGGAGAACTATTCGACTTGCTCAAATCTGGAAAGTATCATTGCGTTTATC CAGAAGAGGCAGCACTTCTTGCTGTGCTATGGATGTTAGAACGCCGAGAT TTCGAGCTTGCACGTGGACTGGTGAGTACTATTGCACCCTACTTTGGGGA TGTACGTTTCTACCCCCACCCATCGTCGGCTCCTAAATCTCTGGACCTGA AGTGCAGCTTGCTCACTGTGGGTGCTTTCAAGCGTGGAGTTTCAGACATG CGAGTGTCGCACGGTAGCCTTTCGTATGCCATAAACAAGCTAATTGTGGA GGACTGCGCTCCGAGCTATGACAGGCTCGTATCGCTGATACTAGCCACAT GTAAGAAGGGAGCTTTTGACTTGATACCCTTCGAAGCTCGTCCTTCGAAC AAAATGGTCGCTGCATTTAAGATCCTGTTCCGGCGCTTCGAGAACGTCCA GAGAATGTATGAATCTTTCCTTCATCTAGCCAAGCGTCCAAAAAAAGAAC TGCGGCAGCTTGGAGAATCGCGGAATTGCGGAAAACTGCTGAGGTTCTCA AAGGCCTTTGTCGAAAGAAAGACAAAACGTATAACTCGAATTGAAAGGAG TGAAGCGCAGAGGATAATCATTCAAATACGTGACAGGTCAAGGCGCGGAC TGCCTTCGGTTTGGACACCGGGCCAGGACTTCAGTAACGCGGAAACTAGG TTGGATGAACTTCCCCGTAAGCTGAAAATTTTCAGGGAGCGCCAAAGAAA GACTACATTAGCAGAACACCAACTGGTTTCACATGACTGGAAGGAACTTT CCTTGAATCGCGTTACTAAACCAAGTGTAGACGATCAAACTGGGATTGAT GATGTTGGGCCAATGACCCAACCTGTTACCAGAAGAGAGGCAGAACGTCA CGGGTTTACGCGTGGTACAGCCATACCCCCCTTGATTTGTCGCATGGTAA GAATGCTTGAGAGACAACCTCTGAAAGCGATGTTTGAAAGAGAACTGGTG CCATCTATGGAAGTTTTGGCTATCCTGGTAGATCAAATCTTAGGGGCGGC ACAGGCTCAAACCCAAGGACCCATCGAAACGAGAAGACTTTATGCCTCGC TTTTAGGAGCTTTTCGTAATCGCCGATCTCTACTCCTCTTTGATTATGAA TCTCAAGTCAAGTTTGAAGAACTGCCTTGGGTTCATCGCCTGGAGGAGGT TCGAAGAGAGCACGACGATGCAGACGATCGCGACAAATCTCAACTATTAT GTGAGATGGTTAAATTATGTATATCAAAGTGGCCTGACGTAATGATTCCG AATAAGATGATCACCGCTCTAGATCATATGGCCAGAGGTTTTTCAATATC TACTGCTGATGGCCCTTGGATAGGACTCCTCCCAGAGTTGGCAGCAGATA TATTCATGGGTGGATTCACCCCAAAATGGTGCTTGCATGCCGCTTTGGCG AGGAAATTGCTGGCATCATCGCTTTACGCGAAGTACTACGGCACTGAACT TCGTAAATCTCTTTGGGATGGGATGGATCAAATACAGGTCGATGCTCGTC ATAAATGTCGTCAATTCACGTCGTTGTGTACAAAACGGGGCGAGAAACAA AAAATGCAGGGGTACGTAGCCCGAAACCGAGCTGTTATCGAGGAATCTAT GATACTCACGGGTCAAAACTACCCATACCTCCTTGAAGTGCTGGATTATC ATGGGAAAGGGTTTGATAGCAAAGAGCTCTTAGAGATCTGTGTGAAGTGC TTCCAAAATTTGAAGCAAACGATGATCCCAGCTTTGGCCGATAAGACTCC CTGGCAAACACGCACGCGAATAACTAAAAATGTCGCTTACGGTTGGCGTC AACTTGTTATTCTGGTTTCATCAATGGACACTAAGGACGTGGAGCATTTC TTTCGACAGACTATAAGCCTGGAGGAGGCTGTTGGTGGCTGCACTCTGCA ACGGGCTCTGGTGGATCTAAGAGCGGTATGGATGGCTATGCAAAACGAAG CCTGGACGGGACGTCCATGGAAGCCTCTTCGTGGGTGGCACAGCGGCCAG CACAGTCTCTGGGACAAGTTGTGGTGTGAACGACTGAGGAACAGGGCAGG CTCTCGTCATGACAGCCATGTCCGCAGTGGAGATTTGACGCTGTTAAGGG TATGA
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Coding sequence (CDS) from alignment at tig00000900_pilon:616868..619372+

>Ggra2199.t1 ID=Ggra2199.t1|Name=Ggra2199.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2505bp|location=Sequence derived from alignment at tig00000900_pilon:616868..619372+ (Gracilaria gracilis GNS1m male)
ATGAACACAAACGCAGGATGCATTTGCTGCGATAGTGGATACGCTCTCTC
GGAGAGGCAATCGGAAAAATTCCGACAGTGGTTGGAATGCCTTCACAACA
TTGTGAGCGGAGATGTTAGAATTGGTTCACGAACGCCACTACGGGACAAG
CCCATCTTTCTGACCCCCGAAGTTCTCCCCGGGGGATTTGCAAATGGTCG
CCTCATGGCGGGAGGTGACCTCGCCCCTTTTGAACAAGAGTTGGTCAACA
AGAATGGCTGGAATTTTTCTAATCTATCCAACGAATACCGAGTCCAGTTG
CAGAACTTGAGAAAGTCTTTGAACAAATACTTCTTGTCCCCGAAAGGATT
GGGAGAACTATTCGACTTGCTCAAATCTGGAAAGTATCATTGCGTTTATC
CAGAAGAGGCAGCACTTCTTGCTGTGCTATGGATGTTAGAACGCCGAGAT
TTCGAGCTTGCACGTGGACTGGTGAGTACTATTGCACCCTACTTTGGGGA
TGTACGTTTCTACCCCCACCCATCGTCGGCTCCTAAATCTCTGGACCTGA
AGTGCAGCTTGCTCACTGTGGGTGCTTTCAAGCGTGGAGTTTCAGACATG
CGAGTGTCGCACGGTAGCCTTTCGTATGCCATAAACAAGCTAATTGTGGA
GGACTGCGCTCCGAGCTATGACAGGCTCGTATCGCTGATACTAGCCACAT
GTAAGAAGGGAGCTTTTGACTTGATACCCTTCGAAGCTCGTCCTTCGAAC
AAAATGGTCGCTGCATTTAAGATCCTGTTCCGGCGCTTCGAGAACGTCCA
GAGAATGTATGAATCTTTCCTTCATCTAGCCAAGCGTCCAAAAAAAGAAC
TGCGGCAGCTTGGAGAATCGCGGAATTGCGGAAAACTGCTGAGGTTCTCA
AAGGCCTTTGTCGAAAGAAAGACAAAACGTATAACTCGAATTGAAAGGAG
TGAAGCGCAGAGGATAATCATTCAAATACGTGACAGGTCAAGGCGCGGAC
TGCCTTCGGTTTGGACACCGGGCCAGGACTTCAGTAACGCGGAAACTAGG
TTGGATGAACTTCCCCGTAAGCTGAAAATTTTCAGGGAGCGCCAAAGAAA
GACTACATTAGCAGAACACCAACTGGTTTCACATGACTGGAAGGAACTTT
CCTTGAATCGCGTTACTAAACCAAGTGTAGACGATCAAACTGGGATTGAT
GATGTTGGGCCAATGACCCAACCTGTTACCAGAAGAGAGGCAGAACGTCA
CGGGTTTACGCGTGGTACAGCCATACCCCCCTTGATTTGTCGCATGGTAA
GAATGCTTGAGAGACAACCTCTGAAAGCGATGTTTGAAAGAGAACTGGTG
CCATCTATGGAAGTTTTGGCTATCCTGGTAGATCAAATCTTAGGGGCGGC
ACAGGCTCAAACCCAAGGACCCATCGAAACGAGAAGACTTTATGCCTCGC
TTTTAGGAGCTTTTCGTAATCGCCGATCTCTACTCCTCTTTGATTATGAA
TCTCAAGTCAAGTTTGAAGAACTGCCTTGGGTTCATCGCCTGGAGGAGGT
TCGAAGAGAGCACGACGATGCAGACGATCGCGACAAATCTCAACTATTAT
GTGAGATGGTTAAATTATGTATATCAAAGTGGCCTGACGTAATGATTCCG
AATAAGATGATCACCGCTCTAGATCATATGGCCAGAGGTTTTTCAATATC
TACTGCTGATGGCCCTTGGATAGGACTCCTCCCAGAGTTGGCAGCAGATA
TATTCATGGGTGGATTCACCCCAAAATGGTGCTTGCATGCCGCTTTGGCG
AGGAAATTGCTGGCATCATCGCTTTACGCGAAGTACTACGGCACTGAACT
TCGTAAATCTCTTTGGGATGGGATGGATCAAATACAGGTCGATGCTCGTC
ATAAATGTCGTCAATTCACGTCGTTGTGTACAAAACGGGGCGAGAAACAA
AAAATGCAGGGGTACGTAGCCCGAAACCGAGCTGTTATCGAGGAATCTAT
GATACTCACGGGTCAAAACTACCCATACCTCCTTGAAGTGCTGGATTATC
ATGGGAAAGGGTTTGATAGCAAAGAGCTCTTAGAGATCTGTGTGAAGTGC
TTCCAAAATTTGAAGCAAACGATGATCCCAGCTTTGGCCGATAAGACTCC
CTGGCAAACACGCACGCGAATAACTAAAAATGTCGCTTACGGTTGGCGTC
AACTTGTTATTCTGGTTTCATCAATGGACACTAAGGACGTGGAGCATTTC
TTTCGACAGACTATAAGCCTGGAGGAGGCTGTTGGTGGCTGCACTCTGCA
ACGGGCTCTGGTGGATCTAAGAGCGGTATGGATGGCTATGCAAAACGAAG
CCTGGACGGGACGTCCATGGAAGCCTCTTCGTGGGTGGCACAGCGGCCAG
CACAGTCTCTGGGACAAGTTGTGGTGTGAACGACTGAGGAACAGGGCAGG
CTCTCGTCATGACAGCCATGTCCGCAGTGGAGATTTGACGCTGTTAAGGG
TATGA
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