Ggra2197.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2197.t1
Unique NameGgra2197.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length414
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:609234..610475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2197Ggra2197Gracilaria gracilis GNS1m malegenetig00000900_pilon 609234..610475 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2197.t1.stop1Ggra2197.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 609234..609236 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2197.t1.CDS1Ggra2197.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 609234..610475 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2197.t1.exon1Ggra2197.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 609234..610475 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2197.t1.start1Ggra2197.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 610473..610475 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2197.t1Ggra2197.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 609234..610475 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2197.t1 ID=Ggra2197.t1|Name=Ggra2197.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=414bp
MASDSFSPRICFSSFTAPNLLPSPTSTSRHLRSLCVFANAKKSPNQKRAS
RASKNKRVSAKNTQSADADTSPSKPPVGFAKPPEDELQTEKTSGESGDET
PHRALTQPPFKKMENPEDDPLDAPTEPIIELPRLTRERIQSLRFDPKSQP
DEIIEFLADAQKRDDFADVIVANRDFLSENVLYRFTSAILQVETRDYDLE
SREEEARNMRQLRKDLIALCWSLDFPLKVGVQLAEARLLNVLKGGDIKSD
VERYCGRSTIEIDSFWIVVFAAVAAWEERGRENPELANVDMQKSLALAAD
ACKTLKVVNDHLSSSLKAVQEILTSTDPDVQRQVVAAFDDETIAELCSFT
EIIRLLPTPAYGALVRRLRSIRDYVRSEKYGIEPPELEPFRFTPADIIRE
SRLATMSESTRSI*
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spliced messenger RNA

>Ggra2197.t1 ID=Ggra2197.t1|Name=Ggra2197.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000900_pilon:609234..610475- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCAGATAGCTTCTCACCGCGTATCTGCTTTTCATCGTTTACAGC
ACCCAACCTACTCCCATCACCCACAAGTACTTCTCGGCATTTGAGAAGCC
TTTGCGTTTTCGCAAATGCTAAGAAAAGCCCGAACCAGAAGCGAGCGTCC
AGAGCGTCAAAGAACAAGAGAGTCTCTGCAAAGAACACACAGTCGGCAGA
TGCAGACACCTCGCCGTCAAAGCCGCCGGTTGGTTTCGCTAAACCACCAG
AAGACGAATTGCAAACAGAAAAAACCTCCGGAGAATCAGGAGATGAAACG
CCTCATCGAGCATTGACCCAACCTCCGTTCAAAAAGATGGAAAACCCGGA
AGATGATCCGTTGGATGCTCCTACTGAGCCGATAATTGAGCTTCCGAGAC
TAACAAGAGAACGAATCCAGTCACTTCGTTTTGACCCGAAGTCACAACCT
GACGAGATCATTGAGTTTCTAGCAGATGCCCAGAAACGAGATGACTTTGC
AGATGTCATTGTGGCCAACCGCGATTTCCTTTCTGAAAATGTGCTATATC
GCTTCACGAGTGCTATTCTTCAAGTTGAAACAAGAGATTACGATCTTGAA
AGCAGGGAAGAGGAAGCACGAAACATGCGCCAGTTGCGCAAGGATCTCAT
TGCACTCTGCTGGAGCCTAGATTTTCCTCTTAAAGTTGGTGTTCAACTTG
CAGAAGCACGTTTACTCAACGTGTTGAAAGGGGGAGACATAAAATCTGAT
GTTGAGCGGTATTGCGGGAGAAGTACAATTGAAATTGATTCCTTTTGGAT
TGTAGTTTTTGCGGCGGTAGCCGCTTGGGAGGAACGTGGTCGAGAGAACC
CAGAGCTTGCTAACGTGGATATGCAAAAATCCCTGGCACTTGCTGCCGAT
GCATGCAAGACATTGAAGGTTGTGAACGACCATTTGAGTTCGTCGCTAAA
GGCAGTTCAGGAAATTTTGACGTCCACAGATCCAGATGTTCAGCGACAGG
TTGTTGCTGCGTTTGATGATGAAACGATTGCTGAGCTGTGTTCATTCACA
GAAATAATCCGATTGCTCCCAACGCCGGCTTATGGCGCACTCGTTCGGAG
ACTGAGGTCAATTAGGGACTACGTGCGCTCAGAAAAGTACGGCATTGAAC
CGCCAGAATTGGAGCCATTCCGCTTCACGCCCGCAGACATTATAAGGGAA
TCAAGACTGGCAACTATGTCGGAGTCAACAAGGTCGATCTAG
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protein sequence of Ggra2197.t1

>Ggra2197.t1 ID=Ggra2197.t1|Name=Ggra2197.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=414bp
MASDSFSPRICFSSFTAPNLLPSPTSTSRHLRSLCVFANAKKSPNQKRAS
RASKNKRVSAKNTQSADADTSPSKPPVGFAKPPEDELQTEKTSGESGDET
PHRALTQPPFKKMENPEDDPLDAPTEPIIELPRLTRERIQSLRFDPKSQP
DEIIEFLADAQKRDDFADVIVANRDFLSENVLYRFTSAILQVETRDYDLE
SREEEARNMRQLRKDLIALCWSLDFPLKVGVQLAEARLLNVLKGGDIKSD
VERYCGRSTIEIDSFWIVVFAAVAAWEERGRENPELANVDMQKSLALAAD
ACKTLKVVNDHLSSSLKAVQEILTSTDPDVQRQVVAAFDDETIAELCSFT
EIIRLLPTPAYGALVRRLRSIRDYVRSEKYGIEPPELEPFRFTPADIIRE
SRLATMSESTRSI*
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mRNA from alignment at tig00000900_pilon:609234..610475-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2197.t1 ID=Ggra2197.t1|Name=Ggra2197.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000900_pilon:609234..610475- (Gracilaria gracilis GNS1m male)
ATGGCCTCAGATAGCTTCTCACCGCGTATCTGCTTTTCATCGTTTACAGC
ACCCAACCTACTCCCATCACCCACAAGTACTTCTCGGCATTTGAGAAGCC
TTTGCGTTTTCGCAAATGCTAAGAAAAGCCCGAACCAGAAGCGAGCGTCC
AGAGCGTCAAAGAACAAGAGAGTCTCTGCAAAGAACACACAGTCGGCAGA
TGCAGACACCTCGCCGTCAAAGCCGCCGGTTGGTTTCGCTAAACCACCAG
AAGACGAATTGCAAACAGAAAAAACCTCCGGAGAATCAGGAGATGAAACG
CCTCATCGAGCATTGACCCAACCTCCGTTCAAAAAGATGGAAAACCCGGA
AGATGATCCGTTGGATGCTCCTACTGAGCCGATAATTGAGCTTCCGAGAC
TAACAAGAGAACGAATCCAGTCACTTCGTTTTGACCCGAAGTCACAACCT
GACGAGATCATTGAGTTTCTAGCAGATGCCCAGAAACGAGATGACTTTGC
AGATGTCATTGTGGCCAACCGCGATTTCCTTTCTGAAAATGTGCTATATC
GCTTCACGAGTGCTATTCTTCAAGTTGAAACAAGAGATTACGATCTTGAA
AGCAGGGAAGAGGAAGCACGAAACATGCGCCAGTTGCGCAAGGATCTCAT
TGCACTCTGCTGGAGCCTAGATTTTCCTCTTAAAGTTGGTGTTCAACTTG
CAGAAGCACGTTTACTCAACGTGTTGAAAGGGGGAGACATAAAATCTGAT
GTTGAGCGGTATTGCGGGAGAAGTACAATTGAAATTGATTCCTTTTGGAT
TGTAGTTTTTGCGGCGGTAGCCGCTTGGGAGGAACGTGGTCGAGAGAACC
CAGAGCTTGCTAACGTGGATATGCAAAAATCCCTGGCACTTGCTGCCGAT
GCATGCAAGACATTGAAGGTTGTGAACGACCATTTGAGTTCGTCGCTAAA
GGCAGTTCAGGAAATTTTGACGTCCACAGATCCAGATGTTCAGCGACAGG
TTGTTGCTGCGTTTGATGATGAAACGATTGCTGAGCTGTGTTCATTCACA
GAAATAATCCGATTGCTCCCAACGCCGGCTTATGGCGCACTCGTTCGGAG
ACTGAGGTCAATTAGGGACTACGTGCGCTCAGAAAAGTACGGCATTGAAC
CGCCAGAATTGGAGCCATTCCGCTTCACGCCCGCAGACATTATAAGGGAA
TCAAGACTGGCAACTATGTCGGAGTCAACAAGGTCGATCTAG
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Coding sequence (CDS) from alignment at tig00000900_pilon:609234..610475-

>Ggra2197.t1 ID=Ggra2197.t1|Name=Ggra2197.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1242bp|location=Sequence derived from alignment at tig00000900_pilon:609234..610475- (Gracilaria gracilis GNS1m male)
ATGGCCTCAGATAGCTTCTCACCGCGTATCTGCTTTTCATCGTTTACAGC
ACCCAACCTACTCCCATCACCCACAAGTACTTCTCGGCATTTGAGAAGCC
TTTGCGTTTTCGCAAATGCTAAGAAAAGCCCGAACCAGAAGCGAGCGTCC
AGAGCGTCAAAGAACAAGAGAGTCTCTGCAAAGAACACACAGTCGGCAGA
TGCAGACACCTCGCCGTCAAAGCCGCCGGTTGGTTTCGCTAAACCACCAG
AAGACGAATTGCAAACAGAAAAAACCTCCGGAGAATCAGGAGATGAAACG
CCTCATCGAGCATTGACCCAACCTCCGTTCAAAAAGATGGAAAACCCGGA
AGATGATCCGTTGGATGCTCCTACTGAGCCGATAATTGAGCTTCCGAGAC
TAACAAGAGAACGAATCCAGTCACTTCGTTTTGACCCGAAGTCACAACCT
GACGAGATCATTGAGTTTCTAGCAGATGCCCAGAAACGAGATGACTTTGC
AGATGTCATTGTGGCCAACCGCGATTTCCTTTCTGAAAATGTGCTATATC
GCTTCACGAGTGCTATTCTTCAAGTTGAAACAAGAGATTACGATCTTGAA
AGCAGGGAAGAGGAAGCACGAAACATGCGCCAGTTGCGCAAGGATCTCAT
TGCACTCTGCTGGAGCCTAGATTTTCCTCTTAAAGTTGGTGTTCAACTTG
CAGAAGCACGTTTACTCAACGTGTTGAAAGGGGGAGACATAAAATCTGAT
GTTGAGCGGTATTGCGGGAGAAGTACAATTGAAATTGATTCCTTTTGGAT
TGTAGTTTTTGCGGCGGTAGCCGCTTGGGAGGAACGTGGTCGAGAGAACC
CAGAGCTTGCTAACGTGGATATGCAAAAATCCCTGGCACTTGCTGCCGAT
GCATGCAAGACATTGAAGGTTGTGAACGACCATTTGAGTTCGTCGCTAAA
GGCAGTTCAGGAAATTTTGACGTCCACAGATCCAGATGTTCAGCGACAGG
TTGTTGCTGCGTTTGATGATGAAACGATTGCTGAGCTGTGTTCATTCACA
GAAATAATCCGATTGCTCCCAACGCCGGCTTATGGCGCACTCGTTCGGAG
ACTGAGGTCAATTAGGGACTACGTGCGCTCAGAAAAGTACGGCATTGAAC
CGCCAGAATTGGAGCCATTCCGCTTCACGCCCGCAGACATTATAAGGGAA
TCAAGACTGGCAACTATGTCGGAGTCAACAAGGTCGATCTAG
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