Ggra2190.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2190.t1
Unique Name	Ggra2190.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	645

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:598405..600433 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3641.EOY22372
PFAMs	DUF4110,Kelch_3,Kelch_4,Kelch_5
Max annot lvl	35493\|Streptophyta
Evalue	6.43e-113
EggNOG OGs	KOG1230@1\|root,KOG1230@2759\|Eukaryota,37P82@33090\|Viridiplantae,3GE0M@35493\|Streptophyta
Description	Kelch domain-containing protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2190	Ggra2190	Gracilaria gracilis GNS1m male	gene	tig00000900_pilon 598405..600433 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2190.t1	Ggra2190.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000900_pilon 598405..600433 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2190.t1.start1	Ggra2190.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000900_pilon 598405..598407 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2190.t1.CDS1	Ggra2190.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 598405..598515 +
Ggra2190.t1.CDS2	Ggra2190.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 598610..600433 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2190.t1.exon1	Ggra2190.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 598405..598515 +
Ggra2190.t1.exon2	Ggra2190.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 598610..600433 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2190.t1.intron1	Ggra2190.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000900_pilon 598516..598609 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2190.t1.stop1	Ggra2190.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000900_pilon 600431..600433 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000900_pilon:598405..600433+
coding sequence from alignment at tig00000900_pilon:598405..600433+

mRNA sequence

>Ggra2190.t1 ID=Ggra2190.t1|Name=Ggra2190.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=645bp
MGKKGKKKQGIGKAKTEAKAAKKAQKAAKKARETDGEDVEAILAEILAKE
AEAVKVAELQDVEPPSPRAAFTLVANPRDENELIMFGGERYTGDKAQFFS
DLYVFNVLKNSWARYDSPNRPPPRSSHAVALHKNMMYMFGGEFSNPSLTQ
YRHYRDLWRLDLEDMSWERIELRGGPSGRSGHRMCVANNRLIVFGGFFDT
GFENKYLNDLYYIDLTLDELKWVKVETSAVDIVPSRRSGFQWVVYGTDVI
LYGGYCKEALKKAKAVSHKGKKKGSTAVEESMVAQGMVLSDTYKLSALNM
KWSKMKRGGYGPARRAGFSMVLHKSNAVVFGGVEDDETEENMASVFYNDL
FGLNLEKKKWYPMTLRRKKAKKGRRRKERDNDVVISDHSPSEAGPAPDDD
LKMVDVDDPKAQEGEEEEKELDTDSLEAALMSERSEVLPCPRFNAAAAIQ
KNVLYLVGGVVEKEQQEITLDDIWAIDLNKLEEYREVKPLSSGCLEWMES
DGEEEVEEGSDVDDEDHSTPEDVDMEDEEEEEERQRRRGGRRERLRARVQ
NTEDEHFTPRVNESLKDFFERTKSYWIGEVHEALGESGKALRRVAFEWAF
RRYWEIKPTLKELEEIEAQIAREEALEQEFQRAQLDQKRTRGRR*

spliced messenger RNA

>Ggra2190.t1 ID=Ggra2190.t1|Name=Ggra2190.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1935bp|location=Sequence derived from alignment at tig00000900_pilon:598405..600433+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAAGAAAGGAAAGAAGAAGCAGGGGATCGGAAAAGCCAAAACAGA
AGCAAAAGCAGCAAAAAAAGCTCAAAAGGCCGCAAAGAAGGCTCGTGAAA
CAGATGGAGAAGATGTAGAAGCAATTCTGGCAGAGATTCTGGCCAAAGAA
GCTGAAGCCGTGAAAGTAGCAGAACTTCAGGATGTAGAGCCACCGTCACC
TCGAGCTGCTTTTACCCTTGTAGCGAATCCACGGGACGAGAACGAACTCA
TTATGTTCGGAGGCGAGCGATATACAGGAGACAAAGCCCAATTCTTTAGT
GACCTATATGTTTTCAATGTCCTAAAGAATTCATGGGCCAGATACGACTC
TCCAAATAGGCCGCCCCCACGGAGTTCACATGCTGTGGCTTTACATAAGA
ACATGATGTACATGTTCGGTGGTGAGTTCAGCAATCCGAGTTTGACACAG
TATCGCCATTACCGTGATCTCTGGCGCCTTGACCTCGAAGACATGAGCTG
GGAGCGTATTGAACTCCGTGGTGGCCCTTCTGGACGTTCTGGGCATCGCA
TGTGCGTCGCGAACAATAGACTGATCGTGTTCGGGGGCTTTTTTGATACC
GGATTCGAGAATAAGTATTTGAACGATCTGTACTACATAGATCTTACTCT
GGATGAACTGAAATGGGTAAAAGTCGAAACTAGTGCTGTAGATATCGTCC
CATCAAGGCGATCTGGGTTTCAATGGGTTGTTTATGGGACGGATGTTATT
TTGTATGGCGGATATTGTAAGGAAGCACTCAAGAAGGCTAAGGCCGTTTC
CCATAAGGGAAAAAAGAAAGGCAGTACGGCTGTTGAAGAATCTATGGTTG
CTCAGGGTATGGTGCTGTCCGACACATACAAGCTTTCTGCGTTGAACATG
AAATGGTCAAAGATGAAGCGAGGTGGATATGGTCCCGCTCGACGCGCTGG
GTTTTCTATGGTGCTTCACAAGTCGAATGCTGTAGTTTTTGGAGGGGTTG
AAGATGATGAAACAGAAGAAAACATGGCATCGGTGTTCTATAATGACCTG
TTCGGGCTGAATCTTGAAAAGAAGAAATGGTATCCTATGACTCTTAGACG
AAAGAAAGCTAAGAAAGGACGACGTCGGAAAGAGCGTGACAATGATGTTG
TAATTTCCGATCATTCGCCTTCAGAGGCAGGTCCCGCGCCTGATGATGAC
TTGAAAATGGTGGATGTTGATGATCCCAAAGCTCAGGAAGGCGAAGAAGA
AGAAAAGGAGCTAGATACTGACTCATTAGAAGCTGCGCTGATGTCCGAGC
GCAGTGAAGTTTTGCCTTGCCCAAGATTCAATGCAGCTGCTGCGATCCAG
AAGAACGTTCTGTACCTCGTTGGTGGCGTTGTTGAGAAAGAACAACAGGA
GATCACGTTGGACGATATCTGGGCGATAGATCTAAATAAGTTAGAGGAGT
ACAGAGAAGTGAAGCCTTTGAGTTCCGGTTGCTTGGAATGGATGGAATCG
GATGGTGAAGAAGAAGTTGAAGAAGGAAGTGATGTTGACGATGAAGACCA
CTCGACACCAGAAGATGTGGACATGGAAGACGAAGAAGAGGAAGAAGAAA
GGCAAAGACGTCGGGGCGGGCGACGAGAACGGCTTCGTGCTCGTGTTCAA
AACACAGAGGACGAACATTTCACACCCCGGGTGAATGAGTCCCTCAAGGA
TTTCTTTGAACGTACGAAGTCGTATTGGATTGGAGAAGTTCATGAGGCGC
TAGGAGAGAGTGGCAAAGCTCTACGAAGAGTTGCCTTTGAATGGGCATTT
AGAAGGTATTGGGAGATTAAGCCTACTCTGAAAGAGCTTGAAGAAATTGA
AGCGCAAATAGCCCGGGAGGAAGCTCTCGAGCAGGAATTCCAGAGAGCTC
AACTGGACCAGAAGCGGACTAGAGGCAGGCGCTGA

protein sequence of Ggra2190.t1

>Ggra2190.t1 ID=Ggra2190.t1|Name=Ggra2190.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=645bp
MGKKGKKKQGIGKAKTEAKAAKKAQKAAKKARETDGEDVEAILAEILAKE
AEAVKVAELQDVEPPSPRAAFTLVANPRDENELIMFGGERYTGDKAQFFS
DLYVFNVLKNSWARYDSPNRPPPRSSHAVALHKNMMYMFGGEFSNPSLTQ
YRHYRDLWRLDLEDMSWERIELRGGPSGRSGHRMCVANNRLIVFGGFFDT
GFENKYLNDLYYIDLTLDELKWVKVETSAVDIVPSRRSGFQWVVYGTDVI
LYGGYCKEALKKAKAVSHKGKKKGSTAVEESMVAQGMVLSDTYKLSALNM
KWSKMKRGGYGPARRAGFSMVLHKSNAVVFGGVEDDETEENMASVFYNDL
FGLNLEKKKWYPMTLRRKKAKKGRRRKERDNDVVISDHSPSEAGPAPDDD
LKMVDVDDPKAQEGEEEEKELDTDSLEAALMSERSEVLPCPRFNAAAAIQ
KNVLYLVGGVVEKEQQEITLDDIWAIDLNKLEEYREVKPLSSGCLEWMES
DGEEEVEEGSDVDDEDHSTPEDVDMEDEEEEEERQRRRGGRRERLRARVQ
NTEDEHFTPRVNESLKDFFERTKSYWIGEVHEALGESGKALRRVAFEWAF
RRYWEIKPTLKELEEIEAQIAREEALEQEFQRAQLDQKRTRGRR*

mRNA from alignment at tig00000900_pilon:598405..600433+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2190.t1 ID=Ggra2190.t1|Name=Ggra2190.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2029bp|location=Sequence derived from alignment at tig00000900_pilon:598405..600433+ (Gracilaria gracilis GNS1m male)
ATGGGCAAGAAAGGAAAGAAGAAGCAGGGGATCGGAAAAGCCAAAACAGA
AGCAAAAGCAGCAAAAAAAGCTCAAAAGGCCGCAAAGAAGGCTCGTGAAA
CAGATGGAGAAGTAAGTCACGAATGAAACCCGATCACTACCTGATAATGA
ACCTCTGTATCTTCCTCTTCTATTGGTGCTAACCCAGTTTTTTTCTTCGG
TGAAGGATGTAGAAGCAATTCTGGCAGAGATTCTGGCCAAAGAAGCTGAA
GCCGTGAAAGTAGCAGAACTTCAGGATGTAGAGCCACCGTCACCTCGAGC
TGCTTTTACCCTTGTAGCGAATCCACGGGACGAGAACGAACTCATTATGT
TCGGAGGCGAGCGATATACAGGAGACAAAGCCCAATTCTTTAGTGACCTA
TATGTTTTCAATGTCCTAAAGAATTCATGGGCCAGATACGACTCTCCAAA
TAGGCCGCCCCCACGGAGTTCACATGCTGTGGCTTTACATAAGAACATGA
TGTACATGTTCGGTGGTGAGTTCAGCAATCCGAGTTTGACACAGTATCGC
CATTACCGTGATCTCTGGCGCCTTGACCTCGAAGACATGAGCTGGGAGCG
TATTGAACTCCGTGGTGGCCCTTCTGGACGTTCTGGGCATCGCATGTGCG
TCGCGAACAATAGACTGATCGTGTTCGGGGGCTTTTTTGATACCGGATTC
GAGAATAAGTATTTGAACGATCTGTACTACATAGATCTTACTCTGGATGA
ACTGAAATGGGTAAAAGTCGAAACTAGTGCTGTAGATATCGTCCCATCAA
GGCGATCTGGGTTTCAATGGGTTGTTTATGGGACGGATGTTATTTTGTAT
GGCGGATATTGTAAGGAAGCACTCAAGAAGGCTAAGGCCGTTTCCCATAA
GGGAAAAAAGAAAGGCAGTACGGCTGTTGAAGAATCTATGGTTGCTCAGG
GTATGGTGCTGTCCGACACATACAAGCTTTCTGCGTTGAACATGAAATGG
TCAAAGATGAAGCGAGGTGGATATGGTCCCGCTCGACGCGCTGGGTTTTC
TATGGTGCTTCACAAGTCGAATGCTGTAGTTTTTGGAGGGGTTGAAGATG
ATGAAACAGAAGAAAACATGGCATCGGTGTTCTATAATGACCTGTTCGGG
CTGAATCTTGAAAAGAAGAAATGGTATCCTATGACTCTTAGACGAAAGAA
AGCTAAGAAAGGACGACGTCGGAAAGAGCGTGACAATGATGTTGTAATTT
CCGATCATTCGCCTTCAGAGGCAGGTCCCGCGCCTGATGATGACTTGAAA
ATGGTGGATGTTGATGATCCCAAAGCTCAGGAAGGCGAAGAAGAAGAAAA
GGAGCTAGATACTGACTCATTAGAAGCTGCGCTGATGTCCGAGCGCAGTG
AAGTTTTGCCTTGCCCAAGATTCAATGCAGCTGCTGCGATCCAGAAGAAC
GTTCTGTACCTCGTTGGTGGCGTTGTTGAGAAAGAACAACAGGAGATCAC
GTTGGACGATATCTGGGCGATAGATCTAAATAAGTTAGAGGAGTACAGAG
AAGTGAAGCCTTTGAGTTCCGGTTGCTTGGAATGGATGGAATCGGATGGT
GAAGAAGAAGTTGAAGAAGGAAGTGATGTTGACGATGAAGACCACTCGAC
ACCAGAAGATGTGGACATGGAAGACGAAGAAGAGGAAGAAGAAAGGCAAA
GACGTCGGGGCGGGCGACGAGAACGGCTTCGTGCTCGTGTTCAAAACACA
GAGGACGAACATTTCACACCCCGGGTGAATGAGTCCCTCAAGGATTTCTT
TGAACGTACGAAGTCGTATTGGATTGGAGAAGTTCATGAGGCGCTAGGAG
AGAGTGGCAAAGCTCTACGAAGAGTTGCCTTTGAATGGGCATTTAGAAGG
TATTGGGAGATTAAGCCTACTCTGAAAGAGCTTGAAGAAATTGAAGCGCA
AATAGCCCGGGAGGAAGCTCTCGAGCAGGAATTCCAGAGAGCTCAACTGG
ACCAGAAGCGGACTAGAGGCAGGCGCTGA

Coding sequence (CDS) from alignment at tig00000900_pilon:598405..600433+

>Ggra2190.t1 ID=Ggra2190.t1|Name=Ggra2190.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1935bp|location=Sequence derived from alignment at tig00000900_pilon:598405..600433+ (Gracilaria gracilis GNS1m male)
ATGGGCAAGAAAGGAAAGAAGAAGCAGGGGATCGGAAAAGCCAAAACAGA
AGCAAAAGCAGCAAAAAAAGCTCAAAAGGCCGCAAAGAAGGCTCGTGAAA
CAGATGGAGAAGATGTAGAAGCAATTCTGGCAGAGATTCTGGCCAAAGAA
GCTGAAGCCGTGAAAGTAGCAGAACTTCAGGATGTAGAGCCACCGTCACC
TCGAGCTGCTTTTACCCTTGTAGCGAATCCACGGGACGAGAACGAACTCA
TTATGTTCGGAGGCGAGCGATATACAGGAGACAAAGCCCAATTCTTTAGT
GACCTATATGTTTTCAATGTCCTAAAGAATTCATGGGCCAGATACGACTC
TCCAAATAGGCCGCCCCCACGGAGTTCACATGCTGTGGCTTTACATAAGA
ACATGATGTACATGTTCGGTGGTGAGTTCAGCAATCCGAGTTTGACACAG
TATCGCCATTACCGTGATCTCTGGCGCCTTGACCTCGAAGACATGAGCTG
GGAGCGTATTGAACTCCGTGGTGGCCCTTCTGGACGTTCTGGGCATCGCA
TGTGCGTCGCGAACAATAGACTGATCGTGTTCGGGGGCTTTTTTGATACC
GGATTCGAGAATAAGTATTTGAACGATCTGTACTACATAGATCTTACTCT
GGATGAACTGAAATGGGTAAAAGTCGAAACTAGTGCTGTAGATATCGTCC
CATCAAGGCGATCTGGGTTTCAATGGGTTGTTTATGGGACGGATGTTATT
TTGTATGGCGGATATTGTAAGGAAGCACTCAAGAAGGCTAAGGCCGTTTC
CCATAAGGGAAAAAAGAAAGGCAGTACGGCTGTTGAAGAATCTATGGTTG
CTCAGGGTATGGTGCTGTCCGACACATACAAGCTTTCTGCGTTGAACATG
AAATGGTCAAAGATGAAGCGAGGTGGATATGGTCCCGCTCGACGCGCTGG
GTTTTCTATGGTGCTTCACAAGTCGAATGCTGTAGTTTTTGGAGGGGTTG
AAGATGATGAAACAGAAGAAAACATGGCATCGGTGTTCTATAATGACCTG
TTCGGGCTGAATCTTGAAAAGAAGAAATGGTATCCTATGACTCTTAGACG
AAAGAAAGCTAAGAAAGGACGACGTCGGAAAGAGCGTGACAATGATGTTG
TAATTTCCGATCATTCGCCTTCAGAGGCAGGTCCCGCGCCTGATGATGAC
TTGAAAATGGTGGATGTTGATGATCCCAAAGCTCAGGAAGGCGAAGAAGA
AGAAAAGGAGCTAGATACTGACTCATTAGAAGCTGCGCTGATGTCCGAGC
GCAGTGAAGTTTTGCCTTGCCCAAGATTCAATGCAGCTGCTGCGATCCAG
AAGAACGTTCTGTACCTCGTTGGTGGCGTTGTTGAGAAAGAACAACAGGA
GATCACGTTGGACGATATCTGGGCGATAGATCTAAATAAGTTAGAGGAGT
ACAGAGAAGTGAAGCCTTTGAGTTCCGGTTGCTTGGAATGGATGGAATCG
GATGGTGAAGAAGAAGTTGAAGAAGGAAGTGATGTTGACGATGAAGACCA
CTCGACACCAGAAGATGTGGACATGGAAGACGAAGAAGAGGAAGAAGAAA
GGCAAAGACGTCGGGGCGGGCGACGAGAACGGCTTCGTGCTCGTGTTCAA
AACACAGAGGACGAACATTTCACACCCCGGGTGAATGAGTCCCTCAAGGA
TTTCTTTGAACGTACGAAGTCGTATTGGATTGGAGAAGTTCATGAGGCGC
TAGGAGAGAGTGGCAAAGCTCTACGAAGAGTTGCCTTTGAATGGGCATTT
AGAAGGTATTGGGAGATTAAGCCTACTCTGAAAGAGCTTGAAGAAATTGA
AGCGCAAATAGCCCGGGAGGAAGCTCTCGAGCAGGAATTCCAGAGAGCTC
AACTGGACCAGAAGCGGACTAGAGGCAGGCGCTGA