Ggra2189.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2189.t1
Unique NameGgra2189.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length258
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:596859..597632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702813.1
PFAMsAmidohydro_1,PNP_UDP_1,RabGAP-TBC
Max annot lvl2759|Eukaryota
KEGG rclassRC00477
KEGG koko:K12960
KEGG ReactionR09660
KEGG Pathwayko00270,ko01100,map00270,map01100
Evalue3.18e-57
EggNOG OGsCOG0005@1|root,COG0402@1|root,KOG3968@2759|Eukaryota,KOG3985@2759|Eukaryota
EC3.5.4.28,3.5.4.31
DescriptionS-methyl-5-thioadenosine phosphorylase activity
COG categoryF
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2189Ggra2189Gracilaria gracilis GNS1m malegenetig00000900_pilon 596859..597632 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2189.t1.stop1Ggra2189.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 596859..596861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2189.t1.CDS1Ggra2189.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 596859..597632 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2189.t1.exon1Ggra2189.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 596859..597632 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2189.t1.start1Ggra2189.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 597630..597632 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2189.t1Ggra2189.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 596859..597632 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2189.t1 ID=Ggra2189.t1|Name=Ggra2189.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=258bp
MGKLGILGGTSLLNSGIFSSLRPKTVDTPHGKAIVHCNPESSDSVVFVQR
HHADGAAGKDVYRPPHLVNFRANLAAMVAEGVDRIIAVCCVGSLSKDIPI
GTIVIPDDYFYLFGPSVSYYDDARAHIVPGIDDDLRGKLIKVLSVEKDLA
LRRDSAVYVQTVGPRFETKAEVQFLSSLGDVIGMTGATEATLAKELGVPY
AILAMVDNIANGLADTELTKEQFLANVAKNLNVVERCMGAVLKRLNSKSS
VCNGTIS*
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spliced messenger RNA

>Ggra2189.t1 ID=Ggra2189.t1|Name=Ggra2189.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00000900_pilon:596859..597632- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGAAGCTGGGTATTCTTGGGGGCACCAGTTTGCTCAATAGTGGCAT
ATTTTCATCACTGCGACCAAAAACTGTTGACACCCCTCATGGTAAAGCCA
TCGTTCACTGCAATCCTGAAAGTTCTGATTCAGTGGTTTTCGTTCAACGC
CACCATGCAGATGGAGCAGCCGGAAAAGATGTGTACAGACCGCCTCACCT
CGTCAATTTTCGAGCGAATTTGGCCGCCATGGTCGCAGAAGGTGTTGATA
GAATCATAGCTGTGTGCTGTGTGGGTTCTCTTTCGAAAGATATTCCAATC
GGCACCATAGTGATTCCTGATGATTATTTCTACTTGTTTGGTCCGTCGGT
ATCATATTACGATGATGCGAGAGCACACATTGTCCCAGGTATTGATGATG
ATCTCAGAGGGAAGCTAATTAAGGTATTATCAGTGGAGAAAGATTTAGCT
TTGCGGCGCGATAGTGCGGTGTACGTACAGACCGTTGGTCCACGTTTTGA
AACTAAGGCAGAAGTTCAGTTTTTGTCATCTCTTGGGGATGTAATCGGCA
TGACTGGAGCAACAGAAGCAACTCTTGCAAAAGAATTGGGTGTGCCATAC
GCCATTCTTGCTATGGTGGACAACATAGCAAATGGGTTAGCGGACACCGA
ATTAACCAAAGAGCAGTTCCTTGCCAACGTTGCCAAGAATCTGAACGTTG
TAGAGCGATGTATGGGTGCAGTACTGAAGCGCCTGAACTCTAAAAGCTCT
GTATGTAATGGTACAATTTCTTAG
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protein sequence of Ggra2189.t1

>Ggra2189.t1 ID=Ggra2189.t1|Name=Ggra2189.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=258bp
MGKLGILGGTSLLNSGIFSSLRPKTVDTPHGKAIVHCNPESSDSVVFVQR
HHADGAAGKDVYRPPHLVNFRANLAAMVAEGVDRIIAVCCVGSLSKDIPI
GTIVIPDDYFYLFGPSVSYYDDARAHIVPGIDDDLRGKLIKVLSVEKDLA
LRRDSAVYVQTVGPRFETKAEVQFLSSLGDVIGMTGATEATLAKELGVPY
AILAMVDNIANGLADTELTKEQFLANVAKNLNVVERCMGAVLKRLNSKSS
VCNGTIS*
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mRNA from alignment at tig00000900_pilon:596859..597632-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2189.t1 ID=Ggra2189.t1|Name=Ggra2189.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00000900_pilon:596859..597632- (Gracilaria gracilis GNS1m male)
ATGGGGAAGCTGGGTATTCTTGGGGGCACCAGTTTGCTCAATAGTGGCAT
ATTTTCATCACTGCGACCAAAAACTGTTGACACCCCTCATGGTAAAGCCA
TCGTTCACTGCAATCCTGAAAGTTCTGATTCAGTGGTTTTCGTTCAACGC
CACCATGCAGATGGAGCAGCCGGAAAAGATGTGTACAGACCGCCTCACCT
CGTCAATTTTCGAGCGAATTTGGCCGCCATGGTCGCAGAAGGTGTTGATA
GAATCATAGCTGTGTGCTGTGTGGGTTCTCTTTCGAAAGATATTCCAATC
GGCACCATAGTGATTCCTGATGATTATTTCTACTTGTTTGGTCCGTCGGT
ATCATATTACGATGATGCGAGAGCACACATTGTCCCAGGTATTGATGATG
ATCTCAGAGGGAAGCTAATTAAGGTATTATCAGTGGAGAAAGATTTAGCT
TTGCGGCGCGATAGTGCGGTGTACGTACAGACCGTTGGTCCACGTTTTGA
AACTAAGGCAGAAGTTCAGTTTTTGTCATCTCTTGGGGATGTAATCGGCA
TGACTGGAGCAACAGAAGCAACTCTTGCAAAAGAATTGGGTGTGCCATAC
GCCATTCTTGCTATGGTGGACAACATAGCAAATGGGTTAGCGGACACCGA
ATTAACCAAAGAGCAGTTCCTTGCCAACGTTGCCAAGAATCTGAACGTTG
TAGAGCGATGTATGGGTGCAGTACTGAAGCGCCTGAACTCTAAAAGCTCT
GTATGTAATGGTACAATTTCTTAG
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Coding sequence (CDS) from alignment at tig00000900_pilon:596859..597632-

>Ggra2189.t1 ID=Ggra2189.t1|Name=Ggra2189.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=774bp|location=Sequence derived from alignment at tig00000900_pilon:596859..597632- (Gracilaria gracilis GNS1m male)
ATGGGGAAGCTGGGTATTCTTGGGGGCACCAGTTTGCTCAATAGTGGCAT
ATTTTCATCACTGCGACCAAAAACTGTTGACACCCCTCATGGTAAAGCCA
TCGTTCACTGCAATCCTGAAAGTTCTGATTCAGTGGTTTTCGTTCAACGC
CACCATGCAGATGGAGCAGCCGGAAAAGATGTGTACAGACCGCCTCACCT
CGTCAATTTTCGAGCGAATTTGGCCGCCATGGTCGCAGAAGGTGTTGATA
GAATCATAGCTGTGTGCTGTGTGGGTTCTCTTTCGAAAGATATTCCAATC
GGCACCATAGTGATTCCTGATGATTATTTCTACTTGTTTGGTCCGTCGGT
ATCATATTACGATGATGCGAGAGCACACATTGTCCCAGGTATTGATGATG
ATCTCAGAGGGAAGCTAATTAAGGTATTATCAGTGGAGAAAGATTTAGCT
TTGCGGCGCGATAGTGCGGTGTACGTACAGACCGTTGGTCCACGTTTTGA
AACTAAGGCAGAAGTTCAGTTTTTGTCATCTCTTGGGGATGTAATCGGCA
TGACTGGAGCAACAGAAGCAACTCTTGCAAAAGAATTGGGTGTGCCATAC
GCCATTCTTGCTATGGTGGACAACATAGCAAATGGGTTAGCGGACACCGA
ATTAACCAAAGAGCAGTTCCTTGCCAACGTTGCCAAGAATCTGAACGTTG
TAGAGCGATGTATGGGTGCAGTACTGAAGCGCCTGAACTCTAAAAGCTCT
GTATGTAATGGTACAATTTCTTAG
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