Ggra2186.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2186.t1
Unique Name	Ggra2186.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	659

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:587148..589124 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709109.1
Preferred name	SPATA20
PFAMs	GlcNAc_2-epim,Thioredox_DsbH
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002
KEGG ko	ko:K00943
KEGG Reaction	R02094,R02098
KEGG Pathway	ko00240,ko01100,map00240,map01100
KEGG Module	M00053
GOs	GO:0000003,GO:0007276,GO:0007283,GO:0008150,GO:0019953,GO:0022414,GO:0032501,GO:0032504,GO:0044703,GO:0048232,GO:0048609,GO:0051704
Evalue	1.56e-147
EggNOG OGs	COG1331@1\|root,KOG2244@2759\|Eukaryota
EC	2.7.4.9
Description	spermatogenesis
COG category	O
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2186	Ggra2186	Gracilaria gracilis GNS1m male	gene	tig00000900_pilon 587148..589124 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2186.t1.stop1	Ggra2186.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000900_pilon 587148..587150 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2186.t1.CDS1	Ggra2186.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 587148..589124 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2186.t1.exon1	Ggra2186.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 587148..589124 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2186.t1.start1	Ggra2186.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000900_pilon 589122..589124 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2186.t1	Ggra2186.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000900_pilon 587148..589124 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000900_pilon:587148..589124-
coding sequence from alignment at tig00000900_pilon:587148..589124-

mRNA sequence

>Ggra2186.t1 ID=Ggra2186.t1|Name=Ggra2186.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=659bp
MSEHFRDPDIAHILNERFICVKVDREERPDVDSVYNNFVQAVTGRTGWPL
TCFLTPSLIPFVGTTYLPKDRLKNAVQSIAERWETNREKVEADGKKVVGA
LQDLFARRTSVPQHHVNIQTLHHAFDAAVASFDVENGGFGSAPKFPRPSV
FEFLLSVHQSNQLHDRVRCEALDMVLDSLRCIASGGIHDHVGGGFFRYSL
DASWQVPHFEKILSDQVQLAMNFLHAYLLSGEQQFRDVVCKTLDFVKRDM
RDEDTGAIYSAIHADSQPLYDITKTSAEGAFYTFSSFELMLILGEPASTI
FQKRFGVTASGNVSESAVAKAEYNGLEGLNVLRINSSIRQIADEVILSEE
EVASILNTSLAKVLEERERRPKPPTDDLSVTSWMGLAISAFVRAGRSLNK
PDYIEVAEKAACLIRRSMVTRVDDESDAVYLARAYRGKRGIVEAFADDYT
YSIQGFLDCYEVTGDLGYLHFARQLQNALDARFLEQDGYYNAVKGDGDIL
LRRVEDYDGAEPAASSVAVLNLVRMASLFGDNKLWIRAKCIMNSFKATFE
TSPLAMPLLLTSAYPLVRDLPQKVVVVGNNEEASNLLDVYWSQGLPRHIS
VLRLPLKDCPRKLAQYFSSDRKALAQDLKNKAAFVCTGEVCLEPTSDPGR
FLTELKQL*

spliced messenger RNA

>Ggra2186.t1 ID=Ggra2186.t1|Name=Ggra2186.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1977bp|location=Sequence derived from alignment at tig00000900_pilon:587148..589124- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGAGCATTTCCGCGATCCCGATATAGCCCACATTCTTAATGAGAG
ATTCATTTGTGTTAAGGTTGATCGCGAGGAGCGCCCCGACGTTGACTCCG
TTTATAATAATTTTGTACAGGCTGTTACGGGTAGAACAGGATGGCCTCTT
ACATGCTTTCTCACACCCAGTCTCATCCCTTTTGTGGGTACAACATATCT
TCCGAAAGACAGACTTAAAAATGCCGTGCAGTCTATAGCGGAGCGATGGG
AGACAAATCGTGAGAAAGTTGAGGCGGATGGGAAGAAAGTTGTTGGAGCT
TTGCAAGACCTATTTGCGCGCAGAACGAGCGTTCCACAGCACCACGTGAA
CATCCAAACTCTACACCATGCATTTGATGCGGCTGTTGCTAGTTTTGACG
TCGAGAATGGAGGCTTTGGTTCCGCACCCAAATTTCCTCGCCCTTCCGTA
TTCGAGTTTTTGCTCTCTGTGCATCAGTCCAACCAGCTTCACGACAGGGT
GCGATGCGAAGCATTGGACATGGTGTTAGATAGTTTGCGATGTATAGCTT
CTGGTGGTATACATGACCATGTTGGCGGAGGATTTTTTCGGTACTCCCTA
GATGCTTCATGGCAGGTGCCGCACTTTGAAAAGATTCTCTCTGACCAAGT
TCAGCTTGCGATGAATTTCTTGCATGCATATTTGTTGTCTGGTGAACAGC
AGTTCCGTGATGTGGTATGCAAGACTTTGGATTTTGTTAAGCGGGATATG
CGAGACGAAGATACCGGTGCGATTTATAGCGCCATCCATGCTGACTCTCA
ACCGTTGTACGATATTACGAAAACTTCTGCGGAAGGCGCGTTCTATACAT
TCAGCTCGTTTGAACTTATGCTCATACTCGGAGAACCTGCGAGCACCATC
TTCCAGAAGCGATTTGGAGTTACAGCTTCGGGTAACGTTTCGGAATCAGC
CGTTGCAAAGGCAGAGTACAATGGCTTGGAAGGTCTCAATGTTTTGCGCA
TCAACTCCTCCATTCGGCAGATAGCGGATGAAGTCATCCTCTCAGAAGAG
GAGGTCGCCAGTATACTGAATACGTCACTGGCCAAGGTCCTGGAGGAACG
AGAACGAAGACCAAAACCGCCGACAGATGATCTCTCTGTGACTTCTTGGA
TGGGCCTTGCAATTTCAGCCTTCGTGAGAGCCGGGCGGTCTTTGAATAAA
CCAGACTACATAGAAGTCGCTGAGAAAGCTGCCTGTCTGATAAGGCGTTC
AATGGTAACTCGCGTGGATGATGAATCGGATGCTGTTTACCTCGCTCGTG
CTTATCGCGGAAAGCGAGGGATAGTAGAAGCATTTGCAGATGACTACACA
TACAGTATACAGGGGTTCCTTGACTGTTATGAGGTCACAGGTGACTTAGG
ATATCTACATTTTGCTCGACAGCTACAAAACGCATTGGATGCTCGATTTC
TGGAGCAAGACGGATATTATAATGCCGTGAAGGGAGATGGGGATATATTA
TTGAGAAGAGTTGAAGACTATGATGGCGCCGAACCTGCCGCGTCCAGTGT
GGCTGTCCTTAACCTCGTCCGTATGGCTTCCTTGTTTGGAGATAATAAGC
TCTGGATCCGGGCCAAATGTATAATGAACTCGTTCAAAGCAACGTTCGAA
ACTAGTCCCCTCGCCATGCCACTCTTGCTCACTTCTGCTTATCCGCTTGT
CCGGGATTTGCCTCAGAAGGTCGTCGTGGTCGGAAACAATGAGGAGGCTT
CCAACTTACTGGATGTGTACTGGTCCCAAGGTCTCCCTCGACACATCAGT
GTGCTCAGGCTTCCGTTGAAGGACTGTCCGAGGAAACTTGCGCAATACTT
CTCATCTGATCGAAAAGCCTTGGCGCAGGATTTGAAGAACAAGGCCGCTT
TCGTGTGCACAGGAGAGGTTTGTCTTGAACCAACTAGTGACCCTGGGCGA
TTTTTGACAGAGCTTAAACAGCTTTAA

protein sequence of Ggra2186.t1

>Ggra2186.t1 ID=Ggra2186.t1|Name=Ggra2186.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=659bp
MSEHFRDPDIAHILNERFICVKVDREERPDVDSVYNNFVQAVTGRTGWPL
TCFLTPSLIPFVGTTYLPKDRLKNAVQSIAERWETNREKVEADGKKVVGA
LQDLFARRTSVPQHHVNIQTLHHAFDAAVASFDVENGGFGSAPKFPRPSV
FEFLLSVHQSNQLHDRVRCEALDMVLDSLRCIASGGIHDHVGGGFFRYSL
DASWQVPHFEKILSDQVQLAMNFLHAYLLSGEQQFRDVVCKTLDFVKRDM
RDEDTGAIYSAIHADSQPLYDITKTSAEGAFYTFSSFELMLILGEPASTI
FQKRFGVTASGNVSESAVAKAEYNGLEGLNVLRINSSIRQIADEVILSEE
EVASILNTSLAKVLEERERRPKPPTDDLSVTSWMGLAISAFVRAGRSLNK
PDYIEVAEKAACLIRRSMVTRVDDESDAVYLARAYRGKRGIVEAFADDYT
YSIQGFLDCYEVTGDLGYLHFARQLQNALDARFLEQDGYYNAVKGDGDIL
LRRVEDYDGAEPAASSVAVLNLVRMASLFGDNKLWIRAKCIMNSFKATFE
TSPLAMPLLLTSAYPLVRDLPQKVVVVGNNEEASNLLDVYWSQGLPRHIS
VLRLPLKDCPRKLAQYFSSDRKALAQDLKNKAAFVCTGEVCLEPTSDPGR
FLTELKQL*

mRNA from alignment at tig00000900_pilon:587148..589124-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2186.t1 ID=Ggra2186.t1|Name=Ggra2186.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1977bp|location=Sequence derived from alignment at tig00000900_pilon:587148..589124- (Gracilaria gracilis GNS1m male)
ATGTCAGAGCATTTCCGCGATCCCGATATAGCCCACATTCTTAATGAGAG
ATTCATTTGTGTTAAGGTTGATCGCGAGGAGCGCCCCGACGTTGACTCCG
TTTATAATAATTTTGTACAGGCTGTTACGGGTAGAACAGGATGGCCTCTT
ACATGCTTTCTCACACCCAGTCTCATCCCTTTTGTGGGTACAACATATCT
TCCGAAAGACAGACTTAAAAATGCCGTGCAGTCTATAGCGGAGCGATGGG
AGACAAATCGTGAGAAAGTTGAGGCGGATGGGAAGAAAGTTGTTGGAGCT
TTGCAAGACCTATTTGCGCGCAGAACGAGCGTTCCACAGCACCACGTGAA
CATCCAAACTCTACACCATGCATTTGATGCGGCTGTTGCTAGTTTTGACG
TCGAGAATGGAGGCTTTGGTTCCGCACCCAAATTTCCTCGCCCTTCCGTA
TTCGAGTTTTTGCTCTCTGTGCATCAGTCCAACCAGCTTCACGACAGGGT
GCGATGCGAAGCATTGGACATGGTGTTAGATAGTTTGCGATGTATAGCTT
CTGGTGGTATACATGACCATGTTGGCGGAGGATTTTTTCGGTACTCCCTA
GATGCTTCATGGCAGGTGCCGCACTTTGAAAAGATTCTCTCTGACCAAGT
TCAGCTTGCGATGAATTTCTTGCATGCATATTTGTTGTCTGGTGAACAGC
AGTTCCGTGATGTGGTATGCAAGACTTTGGATTTTGTTAAGCGGGATATG
CGAGACGAAGATACCGGTGCGATTTATAGCGCCATCCATGCTGACTCTCA
ACCGTTGTACGATATTACGAAAACTTCTGCGGAAGGCGCGTTCTATACAT
TCAGCTCGTTTGAACTTATGCTCATACTCGGAGAACCTGCGAGCACCATC
TTCCAGAAGCGATTTGGAGTTACAGCTTCGGGTAACGTTTCGGAATCAGC
CGTTGCAAAGGCAGAGTACAATGGCTTGGAAGGTCTCAATGTTTTGCGCA
TCAACTCCTCCATTCGGCAGATAGCGGATGAAGTCATCCTCTCAGAAGAG
GAGGTCGCCAGTATACTGAATACGTCACTGGCCAAGGTCCTGGAGGAACG
AGAACGAAGACCAAAACCGCCGACAGATGATCTCTCTGTGACTTCTTGGA
TGGGCCTTGCAATTTCAGCCTTCGTGAGAGCCGGGCGGTCTTTGAATAAA
CCAGACTACATAGAAGTCGCTGAGAAAGCTGCCTGTCTGATAAGGCGTTC
AATGGTAACTCGCGTGGATGATGAATCGGATGCTGTTTACCTCGCTCGTG
CTTATCGCGGAAAGCGAGGGATAGTAGAAGCATTTGCAGATGACTACACA
TACAGTATACAGGGGTTCCTTGACTGTTATGAGGTCACAGGTGACTTAGG
ATATCTACATTTTGCTCGACAGCTACAAAACGCATTGGATGCTCGATTTC
TGGAGCAAGACGGATATTATAATGCCGTGAAGGGAGATGGGGATATATTA
TTGAGAAGAGTTGAAGACTATGATGGCGCCGAACCTGCCGCGTCCAGTGT
GGCTGTCCTTAACCTCGTCCGTATGGCTTCCTTGTTTGGAGATAATAAGC
TCTGGATCCGGGCCAAATGTATAATGAACTCGTTCAAAGCAACGTTCGAA
ACTAGTCCCCTCGCCATGCCACTCTTGCTCACTTCTGCTTATCCGCTTGT
CCGGGATTTGCCTCAGAAGGTCGTCGTGGTCGGAAACAATGAGGAGGCTT
CCAACTTACTGGATGTGTACTGGTCCCAAGGTCTCCCTCGACACATCAGT
GTGCTCAGGCTTCCGTTGAAGGACTGTCCGAGGAAACTTGCGCAATACTT
CTCATCTGATCGAAAAGCCTTGGCGCAGGATTTGAAGAACAAGGCCGCTT
TCGTGTGCACAGGAGAGGTTTGTCTTGAACCAACTAGTGACCCTGGGCGA
TTTTTGACAGAGCTTAAACAGCTTTAA

Coding sequence (CDS) from alignment at tig00000900_pilon:587148..589124-

>Ggra2186.t1 ID=Ggra2186.t1|Name=Ggra2186.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1977bp|location=Sequence derived from alignment at tig00000900_pilon:587148..589124- (Gracilaria gracilis GNS1m male)
ATGTCAGAGCATTTCCGCGATCCCGATATAGCCCACATTCTTAATGAGAG
ATTCATTTGTGTTAAGGTTGATCGCGAGGAGCGCCCCGACGTTGACTCCG
TTTATAATAATTTTGTACAGGCTGTTACGGGTAGAACAGGATGGCCTCTT
ACATGCTTTCTCACACCCAGTCTCATCCCTTTTGTGGGTACAACATATCT
TCCGAAAGACAGACTTAAAAATGCCGTGCAGTCTATAGCGGAGCGATGGG
AGACAAATCGTGAGAAAGTTGAGGCGGATGGGAAGAAAGTTGTTGGAGCT
TTGCAAGACCTATTTGCGCGCAGAACGAGCGTTCCACAGCACCACGTGAA
CATCCAAACTCTACACCATGCATTTGATGCGGCTGTTGCTAGTTTTGACG
TCGAGAATGGAGGCTTTGGTTCCGCACCCAAATTTCCTCGCCCTTCCGTA
TTCGAGTTTTTGCTCTCTGTGCATCAGTCCAACCAGCTTCACGACAGGGT
GCGATGCGAAGCATTGGACATGGTGTTAGATAGTTTGCGATGTATAGCTT
CTGGTGGTATACATGACCATGTTGGCGGAGGATTTTTTCGGTACTCCCTA
GATGCTTCATGGCAGGTGCCGCACTTTGAAAAGATTCTCTCTGACCAAGT
TCAGCTTGCGATGAATTTCTTGCATGCATATTTGTTGTCTGGTGAACAGC
AGTTCCGTGATGTGGTATGCAAGACTTTGGATTTTGTTAAGCGGGATATG
CGAGACGAAGATACCGGTGCGATTTATAGCGCCATCCATGCTGACTCTCA
ACCGTTGTACGATATTACGAAAACTTCTGCGGAAGGCGCGTTCTATACAT
TCAGCTCGTTTGAACTTATGCTCATACTCGGAGAACCTGCGAGCACCATC
TTCCAGAAGCGATTTGGAGTTACAGCTTCGGGTAACGTTTCGGAATCAGC
CGTTGCAAAGGCAGAGTACAATGGCTTGGAAGGTCTCAATGTTTTGCGCA
TCAACTCCTCCATTCGGCAGATAGCGGATGAAGTCATCCTCTCAGAAGAG
GAGGTCGCCAGTATACTGAATACGTCACTGGCCAAGGTCCTGGAGGAACG
AGAACGAAGACCAAAACCGCCGACAGATGATCTCTCTGTGACTTCTTGGA
TGGGCCTTGCAATTTCAGCCTTCGTGAGAGCCGGGCGGTCTTTGAATAAA
CCAGACTACATAGAAGTCGCTGAGAAAGCTGCCTGTCTGATAAGGCGTTC
AATGGTAACTCGCGTGGATGATGAATCGGATGCTGTTTACCTCGCTCGTG
CTTATCGCGGAAAGCGAGGGATAGTAGAAGCATTTGCAGATGACTACACA
TACAGTATACAGGGGTTCCTTGACTGTTATGAGGTCACAGGTGACTTAGG
ATATCTACATTTTGCTCGACAGCTACAAAACGCATTGGATGCTCGATTTC
TGGAGCAAGACGGATATTATAATGCCGTGAAGGGAGATGGGGATATATTA
TTGAGAAGAGTTGAAGACTATGATGGCGCCGAACCTGCCGCGTCCAGTGT
GGCTGTCCTTAACCTCGTCCGTATGGCTTCCTTGTTTGGAGATAATAAGC
TCTGGATCCGGGCCAAATGTATAATGAACTCGTTCAAAGCAACGTTCGAA
ACTAGTCCCCTCGCCATGCCACTCTTGCTCACTTCTGCTTATCCGCTTGT
CCGGGATTTGCCTCAGAAGGTCGTCGTGGTCGGAAACAATGAGGAGGCTT
CCAACTTACTGGATGTGTACTGGTCCCAAGGTCTCCCTCGACACATCAGT
GTGCTCAGGCTTCCGTTGAAGGACTGTCCGAGGAAACTTGCGCAATACTT
CTCATCTGATCGAAAAGCCTTGGCGCAGGATTTGAAGAACAAGGCCGCTT
TCGTGTGCACAGGAGAGGTTTGTCTTGAACCAACTAGTGACCCTGGGCGA
TTTTTGACAGAGCTTAAACAGCTTTAA