Ggra2185.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2185.t1
Unique NameGgra2185.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length481
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:585403..586845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMF058CT
PFAMsCation_efflux
Max annot lvl2759|Eukaryota
KEGG koko:K14689
KEGG TC2.A.4.3.1,2.A.4.3.4
Evalue1.81e-68
EggNOG OGsCOG1230@1|root,KOG1482@2759|Eukaryota
Descriptionregulation of sequestering of zinc ion
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2185Ggra2185Gracilaria gracilis GNS1m malegenetig00000900_pilon 585403..586845 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2185.t1.start1Ggra2185.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 585403..585405 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2185.t1.CDS1Ggra2185.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 585403..586845 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2185.t1.exon1Ggra2185.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 585403..586845 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2185.t1.stop1Ggra2185.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 586843..586845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2185.t1Ggra2185.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 585403..586845 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2185.t1 ID=Ggra2185.t1|Name=Ggra2185.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=481bp
MPLHNHFFAYDDQIDDNAISPISLPLSTPPGIIPDAKETDALLPSSNTMH
RLDAKSEIRTLTYACALTTFFFVVELVGGHLAGSLAIMSDAAHLLSDLAG
FMISLIAVSVSHLPPNAHMSFGFARAEVLGAFVSIMFIWALTVVLVIFAI
ERLFNPRPVNAPMMLVLGVIGLFVNITLGCVLGHGHSHAHSHGGHDHDHA
HHSHTDFSFLPNHNAVNGNMGNQSKAPDLENGYLSTASVAAQNGHHHGDA
REHTHGSDHDHSHAHSHDHSHSDKHLNGDVEDGITTGSLRNTVGRILTPK
ETKSANLRAAYLHVLGDALQNVGVITAAIVMIIKPSWAFFDPLCTLLFAA
IVIMTTRDLARETMTVLMEGTPGSLQLEDIHAKLLELDGVSNVGDLHVWS
ITARRPALSVHLYQKNVAEGHDVVKDAQRMLARDFGILHATIQVNCETVE
CCDEVFSFEADSSKNDCVSYRPQNGKTTSG*
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spliced messenger RNA

>Ggra2185.t1 ID=Ggra2185.t1|Name=Ggra2185.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1443bp|location=Sequence derived from alignment at tig00000900_pilon:585403..586845+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCTGCATAACCATTTCTTCGCGTATGACGACCAGATTGATGATAA
TGCCATCTCGCCAATATCTTTACCTCTTTCAACGCCACCAGGCATTATAC
CAGATGCTAAGGAAACGGACGCCCTGTTACCCAGTTCGAACACAATGCAC
AGGTTGGATGCCAAGAGCGAAATTCGAACGTTAACATACGCATGTGCCCT
CACAACTTTCTTCTTTGTTGTTGAGTTGGTGGGTGGCCATCTTGCTGGGT
CTCTTGCGATTATGTCCGACGCTGCTCACCTTCTTTCCGATCTTGCTGGC
TTTATGATATCCTTAATCGCTGTTTCTGTGTCCCATCTACCACCCAACGC
GCATATGAGCTTTGGCTTTGCACGTGCCGAAGTCCTGGGAGCCTTTGTGT
CCATTATGTTCATCTGGGCATTAACAGTCGTCTTGGTCATTTTCGCCATC
GAGAGATTGTTCAACCCAAGACCAGTAAATGCGCCTATGATGCTCGTGTT
GGGAGTCATCGGTCTATTCGTTAACATCACGCTGGGCTGTGTTCTCGGCC
ACGGTCACTCACACGCGCACAGCCATGGAGGCCATGATCATGATCATGCT
CATCACAGCCATACGGACTTCAGTTTCTTGCCAAACCATAATGCTGTCAA
TGGGAATATGGGAAACCAATCTAAGGCACCAGACTTGGAAAATGGCTATC
TGTCGACTGCTTCAGTAGCGGCGCAAAATGGCCATCACCATGGTGATGCC
CGTGAACATACACATGGAAGTGACCACGACCACAGTCATGCCCACAGTCA
TGACCACAGCCACTCAGACAAACATCTAAACGGGGATGTGGAAGACGGAA
TAACTACGGGATCGCTAAGAAATACCGTGGGAAGAATTCTCACACCAAAG
GAAACCAAGTCTGCAAACCTGAGAGCTGCCTACCTTCATGTTCTTGGAGA
CGCATTGCAGAACGTTGGAGTCATAACGGCGGCAATCGTCATGATCATCA
AACCATCCTGGGCTTTCTTTGATCCGTTATGTACGCTTTTGTTCGCAGCC
ATTGTCATCATGACCACCAGGGATCTAGCTAGAGAGACGATGACAGTCTT
GATGGAAGGTACCCCTGGATCATTGCAGTTGGAAGATATCCACGCAAAGC
TTCTTGAGTTGGACGGCGTCAGTAACGTCGGAGACTTGCATGTATGGTCT
ATCACAGCGAGACGCCCTGCACTTAGCGTTCATTTGTATCAGAAGAACGT
TGCGGAAGGTCACGACGTTGTGAAGGATGCACAACGAATGCTAGCGAGAG
ATTTTGGAATACTCCACGCAACAATCCAGGTTAACTGCGAAACCGTTGAG
TGCTGTGACGAGGTCTTTTCATTCGAAGCAGACTCTTCAAAGAATGATTG
TGTGTCCTACCGTCCGCAAAATGGGAAAACTACGTCAGGGTGA
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protein sequence of Ggra2185.t1

>Ggra2185.t1 ID=Ggra2185.t1|Name=Ggra2185.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=481bp
MPLHNHFFAYDDQIDDNAISPISLPLSTPPGIIPDAKETDALLPSSNTMH
RLDAKSEIRTLTYACALTTFFFVVELVGGHLAGSLAIMSDAAHLLSDLAG
FMISLIAVSVSHLPPNAHMSFGFARAEVLGAFVSIMFIWALTVVLVIFAI
ERLFNPRPVNAPMMLVLGVIGLFVNITLGCVLGHGHSHAHSHGGHDHDHA
HHSHTDFSFLPNHNAVNGNMGNQSKAPDLENGYLSTASVAAQNGHHHGDA
REHTHGSDHDHSHAHSHDHSHSDKHLNGDVEDGITTGSLRNTVGRILTPK
ETKSANLRAAYLHVLGDALQNVGVITAAIVMIIKPSWAFFDPLCTLLFAA
IVIMTTRDLARETMTVLMEGTPGSLQLEDIHAKLLELDGVSNVGDLHVWS
ITARRPALSVHLYQKNVAEGHDVVKDAQRMLARDFGILHATIQVNCETVE
CCDEVFSFEADSSKNDCVSYRPQNGKTTSG*
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mRNA from alignment at tig00000900_pilon:585403..586845+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2185.t1 ID=Ggra2185.t1|Name=Ggra2185.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1443bp|location=Sequence derived from alignment at tig00000900_pilon:585403..586845+ (Gracilaria gracilis GNS1m male)
ATGCCTCTGCATAACCATTTCTTCGCGTATGACGACCAGATTGATGATAA
TGCCATCTCGCCAATATCTTTACCTCTTTCAACGCCACCAGGCATTATAC
CAGATGCTAAGGAAACGGACGCCCTGTTACCCAGTTCGAACACAATGCAC
AGGTTGGATGCCAAGAGCGAAATTCGAACGTTAACATACGCATGTGCCCT
CACAACTTTCTTCTTTGTTGTTGAGTTGGTGGGTGGCCATCTTGCTGGGT
CTCTTGCGATTATGTCCGACGCTGCTCACCTTCTTTCCGATCTTGCTGGC
TTTATGATATCCTTAATCGCTGTTTCTGTGTCCCATCTACCACCCAACGC
GCATATGAGCTTTGGCTTTGCACGTGCCGAAGTCCTGGGAGCCTTTGTGT
CCATTATGTTCATCTGGGCATTAACAGTCGTCTTGGTCATTTTCGCCATC
GAGAGATTGTTCAACCCAAGACCAGTAAATGCGCCTATGATGCTCGTGTT
GGGAGTCATCGGTCTATTCGTTAACATCACGCTGGGCTGTGTTCTCGGCC
ACGGTCACTCACACGCGCACAGCCATGGAGGCCATGATCATGATCATGCT
CATCACAGCCATACGGACTTCAGTTTCTTGCCAAACCATAATGCTGTCAA
TGGGAATATGGGAAACCAATCTAAGGCACCAGACTTGGAAAATGGCTATC
TGTCGACTGCTTCAGTAGCGGCGCAAAATGGCCATCACCATGGTGATGCC
CGTGAACATACACATGGAAGTGACCACGACCACAGTCATGCCCACAGTCA
TGACCACAGCCACTCAGACAAACATCTAAACGGGGATGTGGAAGACGGAA
TAACTACGGGATCGCTAAGAAATACCGTGGGAAGAATTCTCACACCAAAG
GAAACCAAGTCTGCAAACCTGAGAGCTGCCTACCTTCATGTTCTTGGAGA
CGCATTGCAGAACGTTGGAGTCATAACGGCGGCAATCGTCATGATCATCA
AACCATCCTGGGCTTTCTTTGATCCGTTATGTACGCTTTTGTTCGCAGCC
ATTGTCATCATGACCACCAGGGATCTAGCTAGAGAGACGATGACAGTCTT
GATGGAAGGTACCCCTGGATCATTGCAGTTGGAAGATATCCACGCAAAGC
TTCTTGAGTTGGACGGCGTCAGTAACGTCGGAGACTTGCATGTATGGTCT
ATCACAGCGAGACGCCCTGCACTTAGCGTTCATTTGTATCAGAAGAACGT
TGCGGAAGGTCACGACGTTGTGAAGGATGCACAACGAATGCTAGCGAGAG
ATTTTGGAATACTCCACGCAACAATCCAGGTTAACTGCGAAACCGTTGAG
TGCTGTGACGAGGTCTTTTCATTCGAAGCAGACTCTTCAAAGAATGATTG
TGTGTCCTACCGTCCGCAAAATGGGAAAACTACGTCAGGGTGA
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Coding sequence (CDS) from alignment at tig00000900_pilon:585403..586845+

>Ggra2185.t1 ID=Ggra2185.t1|Name=Ggra2185.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1443bp|location=Sequence derived from alignment at tig00000900_pilon:585403..586845+ (Gracilaria gracilis GNS1m male)
ATGCCTCTGCATAACCATTTCTTCGCGTATGACGACCAGATTGATGATAA
TGCCATCTCGCCAATATCTTTACCTCTTTCAACGCCACCAGGCATTATAC
CAGATGCTAAGGAAACGGACGCCCTGTTACCCAGTTCGAACACAATGCAC
AGGTTGGATGCCAAGAGCGAAATTCGAACGTTAACATACGCATGTGCCCT
CACAACTTTCTTCTTTGTTGTTGAGTTGGTGGGTGGCCATCTTGCTGGGT
CTCTTGCGATTATGTCCGACGCTGCTCACCTTCTTTCCGATCTTGCTGGC
TTTATGATATCCTTAATCGCTGTTTCTGTGTCCCATCTACCACCCAACGC
GCATATGAGCTTTGGCTTTGCACGTGCCGAAGTCCTGGGAGCCTTTGTGT
CCATTATGTTCATCTGGGCATTAACAGTCGTCTTGGTCATTTTCGCCATC
GAGAGATTGTTCAACCCAAGACCAGTAAATGCGCCTATGATGCTCGTGTT
GGGAGTCATCGGTCTATTCGTTAACATCACGCTGGGCTGTGTTCTCGGCC
ACGGTCACTCACACGCGCACAGCCATGGAGGCCATGATCATGATCATGCT
CATCACAGCCATACGGACTTCAGTTTCTTGCCAAACCATAATGCTGTCAA
TGGGAATATGGGAAACCAATCTAAGGCACCAGACTTGGAAAATGGCTATC
TGTCGACTGCTTCAGTAGCGGCGCAAAATGGCCATCACCATGGTGATGCC
CGTGAACATACACATGGAAGTGACCACGACCACAGTCATGCCCACAGTCA
TGACCACAGCCACTCAGACAAACATCTAAACGGGGATGTGGAAGACGGAA
TAACTACGGGATCGCTAAGAAATACCGTGGGAAGAATTCTCACACCAAAG
GAAACCAAGTCTGCAAACCTGAGAGCTGCCTACCTTCATGTTCTTGGAGA
CGCATTGCAGAACGTTGGAGTCATAACGGCGGCAATCGTCATGATCATCA
AACCATCCTGGGCTTTCTTTGATCCGTTATGTACGCTTTTGTTCGCAGCC
ATTGTCATCATGACCACCAGGGATCTAGCTAGAGAGACGATGACAGTCTT
GATGGAAGGTACCCCTGGATCATTGCAGTTGGAAGATATCCACGCAAAGC
TTCTTGAGTTGGACGGCGTCAGTAACGTCGGAGACTTGCATGTATGGTCT
ATCACAGCGAGACGCCCTGCACTTAGCGTTCATTTGTATCAGAAGAACGT
TGCGGAAGGTCACGACGTTGTGAAGGATGCACAACGAATGCTAGCGAGAG
ATTTTGGAATACTCCACGCAACAATCCAGGTTAACTGCGAAACCGTTGAG
TGCTGTGACGAGGTCTTTTCATTCGAAGCAGACTCTTCAAAGAATGATTG
TGTGTCCTACCGTCCGCAAAATGGGAAAACTACGTCAGGGTGA
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