Ggra2184.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2184.t2
Unique NameGgra2184.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length504
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:576438..578070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX53495
PFAMsAMPK1_CBM,Alpha-amylase,Alpha-amylase_C,Glyco_transf_4,Glycos_transf_1
Max annot lvl2759|Eukaryota
KEGG koko:K03857
KEGG ReactionR05916
KEGG Pathwayko00563,ko01100,map00563,map01100
KEGG ModuleM00065
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0008150,GO:0009987,GO:0016043,GO:0019899,GO:0019900,GO:0019901,GO:0022607,GO:0031588,GO:0032991,GO:0043933,GO:0044085,GO:0044424,GO:0044464,GO:0050790,GO:0051259,GO:0051291,GO:0061695,GO:0065003,GO:0065007,GO:0065009,GO:0071840,GO:1902494,GO:1902911,GO:1990234
Evalue1.56e-10
EggNOG OGsCOG0438@1|root,KOG1616@1|root,KOG1111@2759|Eukaryota,KOG1616@2759|Eukaryota
EC2.4.1.198
Descriptionamylopectin binding
COG categoryS
CAZyGT4
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2184Ggra2184Gracilaria gracilis GNS1m malegenetig00000900_pilon 576438..578070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2184.t2Ggra2184.t2Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 576438..578070 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2184.t2.start1Ggra2184.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 576438..576440 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2184.t2.CDS1Ggra2184.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 576438..577374 +
Ggra2184.t2.CDS2Ggra2184.t2.CDS2Gracilaria gracilis GNS1m maleCDStig00000900_pilon 577496..578070 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2184.t2.exon1Ggra2184.t2.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 576438..577374 +
Ggra2184.t2.exon2Ggra2184.t2.exon2Gracilaria gracilis GNS1m maleexontig00000900_pilon 577496..578070 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2184.t2.intron1Ggra2184.t2.intron1Gracilaria gracilis GNS1m maleintrontig00000900_pilon 577375..577495 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2184.t2.stop1Ggra2184.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 578068..578070 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2184.t2 ID=Ggra2184.t2|Name=Ggra2184.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=504bp
MAPSLVPTTFEYVAERDHESVLIKGSWDRWQSFAALQKTDDNPLLWQVHI
TLNPGTVLFKFVVDNDWVYAPNYKHISDGFGGMNNERHIEPLKGIVSAEP
EPQGNTQPTDSEPAIPSTYASVREVADVDFRHHRQLLPSVHHSHDEAIAS
EHEQSETQTDSAQQPDEPAQSAIPTLSKVEGVQHTKSNPPSGAVTFEYPC
EKPYENVSVRGSWDGWKVPHPLVLSEEHGTWSADINLPVGSFLFKFIVDE
QWTHSAEYEVQSDDFGGFNNVINVTASDSILGDTCEFSDALDTVLQPRSG
EVGSETLSARKEDVYPVENLNASDHEDPTFNPISPQARENIEEENHAEQQ
GEVHPELEQEPSIDQEPKSVGSDKPEETEPTPHVSDVEDKLEAKERSIAE
ETYLSQKEDSPETEQAESTNVIPDSEAVNGDHDAPNSGSELGSRVPVQDL
DASSEEHVEADQAEKSNGEKLSDAEEVLVGIINESGGREKEEERNDGRGC
SIC*
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spliced messenger RNA

>Ggra2184.t2 ID=Ggra2184.t2|Name=Ggra2184.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00000900_pilon:576438..578070+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCGTCGCTTGTTCCCACAACTTTCGAATACGTCGCCGAACGAGA
CCATGAGTCCGTGTTGATTAAGGGCTCGTGGGACCGCTGGCAGTCCTTTG
CCGCTCTCCAGAAAACAGATGATAACCCCCTTCTGTGGCAAGTGCATATC
ACCCTGAATCCTGGCACTGTTCTGTTCAAGTTTGTCGTCGACAACGACTG
GGTCTATGCTCCAAACTACAAGCATATCTCCGATGGATTTGGTGGTATGA
ACAACGAACGGCACATCGAGCCACTGAAAGGAATAGTTAGCGCGGAGCCT
GAGCCGCAAGGGAATACCCAACCAACCGACTCCGAACCTGCAATTCCTTC
CACATACGCGTCTGTTCGTGAGGTTGCAGATGTTGACTTCCGCCATCACC
GTCAGCTACTTCCATCTGTTCACCACTCACACGACGAGGCCATTGCGAGT
GAACACGAGCAGAGTGAGACGCAGACCGACTCGGCACAACAACCAGATGA
ACCTGCACAGAGTGCAATCCCAACACTTTCTAAAGTCGAGGGCGTACAGC
ACACTAAATCAAATCCTCCATCTGGAGCAGTCACATTTGAATACCCATGT
GAAAAACCGTATGAGAATGTGTCGGTAAGGGGGTCTTGGGATGGATGGAA
AGTACCTCACCCTTTAGTATTGTCGGAAGAACACGGGACCTGGTCTGCCG
ACATCAATCTCCCCGTTGGGAGTTTCCTGTTCAAATTTATCGTAGACGAG
CAATGGACCCATTCTGCCGAGTACGAGGTCCAATCAGATGACTTTGGAGG
GTTTAACAATGTTATCAACGTGACTGCATCGGATTCCATTTTGGGCGACA
CTTGTGAGTTTTCTGATGCGTTGGACACTGTGTTGCAGCCTCGAAGCGGT
GAAGTAGGAAGCGAAACATTGAGCGCGAGAAAAGAAGATGTGTACCCAGT
GGAAAATTTGAATGCGTCCGATCATGAGGATCCCACGTTTAACCCCATAT
CCCCTCAAGCGCGAGAAAACATTGAAGAGGAAAATCATGCAGAACAGCAG
GGAGAAGTTCATCCTGAATTGGAACAGGAGCCGAGCATCGATCAAGAACC
CAAGTCGGTGGGCTCCGACAAGCCTGAGGAAACAGAACCAACCCCGCATG
TCTCAGATGTAGAGGATAAGCTGGAGGCCAAAGAGAGATCGATTGCTGAA
GAAACATATCTTTCACAGAAAGAAGACAGTCCTGAGACTGAACAAGCAGA
AAGCACAAACGTAATACCAGATTCTGAGGCTGTTAACGGCGACCACGATG
CACCAAACTCAGGTTCTGAACTCGGGTCTCGTGTACCTGTTCAGGATCTG
GATGCATCTTCTGAGGAACATGTCGAGGCAGATCAAGCAGAAAAATCAAA
CGGCGAAAAGCTTTCCGATGCAGAAGAGGTTCTTGTAGGAATCATAAATG
AAAGTGGTGGACGCGAAAAGGAGGAGGAGAGAAATGATGGCCGGGGTTGC
AGTATTTGCTGA
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protein sequence of Ggra2184.t2

>Ggra2184.t2 ID=Ggra2184.t2|Name=Ggra2184.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=504bp
MAPSLVPTTFEYVAERDHESVLIKGSWDRWQSFAALQKTDDNPLLWQVHI
TLNPGTVLFKFVVDNDWVYAPNYKHISDGFGGMNNERHIEPLKGIVSAEP
EPQGNTQPTDSEPAIPSTYASVREVADVDFRHHRQLLPSVHHSHDEAIAS
EHEQSETQTDSAQQPDEPAQSAIPTLSKVEGVQHTKSNPPSGAVTFEYPC
EKPYENVSVRGSWDGWKVPHPLVLSEEHGTWSADINLPVGSFLFKFIVDE
QWTHSAEYEVQSDDFGGFNNVINVTASDSILGDTCEFSDALDTVLQPRSG
EVGSETLSARKEDVYPVENLNASDHEDPTFNPISPQARENIEEENHAEQQ
GEVHPELEQEPSIDQEPKSVGSDKPEETEPTPHVSDVEDKLEAKERSIAE
ETYLSQKEDSPETEQAESTNVIPDSEAVNGDHDAPNSGSELGSRVPVQDL
DASSEEHVEADQAEKSNGEKLSDAEEVLVGIINESGGREKEEERNDGRGC
SIC*
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mRNA from alignment at tig00000900_pilon:576438..578070+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2184.t2 ID=Ggra2184.t2|Name=Ggra2184.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1633bp|location=Sequence derived from alignment at tig00000900_pilon:576438..578070+ (Gracilaria gracilis GNS1m male)
ATGGCTCCGTCGCTTGTTCCCACAACTTTCGAATACGTCGCCGAACGAGA
CCATGAGTCCGTGTTGATTAAGGGCTCGTGGGACCGCTGGCAGTCCTTTG
CCGCTCTCCAGAAAACAGATGATAACCCCCTTCTGTGGCAAGTGCATATC
ACCCTGAATCCTGGCACTGTTCTGTTCAAGTTTGTCGTCGACAACGACTG
GGTCTATGCTCCAAACTACAAGCATATCTCCGATGGATTTGGTGGTATGA
ACAACGAACGGCACATCGAGCCACTGAAAGGAATAGTTAGCGCGGAGCCT
GAGCCGCAAGGGAATACCCAACCAACCGACTCCGAACCTGCAATTCCTTC
CACATACGCGTCTGTTCGTGAGGTTGCAGATGTTGACTTCCGCCATCACC
GTCAGCTACTTCCATCTGTTCACCACTCACACGACGAGGCCATTGCGAGT
GAACACGAGCAGAGTGAGACGCAGACCGACTCGGCACAACAACCAGATGA
ACCTGCACAGAGTGCAATCCCAACACTTTCTAAAGTCGAGGGCGTACAGC
ACACTAAATCAAATCCTCCATCTGGAGCAGTCACATTTGAATACCCATGT
GAAAAACCGTATGAGAATGTGTCGGTAAGGGGGTCTTGGGATGGATGGAA
AGTACCTCACCCTTTAGTATTGTCGGAAGAACACGGGACCTGGTCTGCCG
ACATCAATCTCCCCGTTGGGAGTTTCCTGTTCAAATTTATCGTAGACGAG
CAATGGACCCATTCTGCCGAGTACGAGGTCCAATCAGATGACTTTGGAGG
GTTTAACAATGTTATCAACGTGACTGCATCGGATTCCATTTTGGGCGACA
CTTGTGAGTTTTCTGATGCGTTGGACACTGTGTTGCAGCCTCGAAGCGGT
GAAGTAGGAAGCGAAACATTGAGCGCGAGAAAAGAAGGTACGTCTGACTC
TGAACGAATGGAGTTTTTCCGAACTCAGGTACGGCGGAAGCGTTCTCTGA
CATACAAGTTTTCTCTGACATGCAAGTATGTTTTCTGCTTCTTGACACGT
TGAAGAAGATGTGTACCCAGTGGAAAATTTGAATGCGTCCGATCATGAGG
ATCCCACGTTTAACCCCATATCCCCTCAAGCGCGAGAAAACATTGAAGAG
GAAAATCATGCAGAACAGCAGGGAGAAGTTCATCCTGAATTGGAACAGGA
GCCGAGCATCGATCAAGAACCCAAGTCGGTGGGCTCCGACAAGCCTGAGG
AAACAGAACCAACCCCGCATGTCTCAGATGTAGAGGATAAGCTGGAGGCC
AAAGAGAGATCGATTGCTGAAGAAACATATCTTTCACAGAAAGAAGACAG
TCCTGAGACTGAACAAGCAGAAAGCACAAACGTAATACCAGATTCTGAGG
CTGTTAACGGCGACCACGATGCACCAAACTCAGGTTCTGAACTCGGGTCT
CGTGTACCTGTTCAGGATCTGGATGCATCTTCTGAGGAACATGTCGAGGC
AGATCAAGCAGAAAAATCAAACGGCGAAAAGCTTTCCGATGCAGAAGAGG
TTCTTGTAGGAATCATAAATGAAAGTGGTGGACGCGAAAAGGAGGAGGAG
AGAAATGATGGCCGGGGTTGCAGTATTTGCTGA
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Coding sequence (CDS) from alignment at tig00000900_pilon:576438..578070+

>Ggra2184.t2 ID=Ggra2184.t2|Name=Ggra2184.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1512bp|location=Sequence derived from alignment at tig00000900_pilon:576438..578070+ (Gracilaria gracilis GNS1m male)
ATGGCTCCGTCGCTTGTTCCCACAACTTTCGAATACGTCGCCGAACGAGA
CCATGAGTCCGTGTTGATTAAGGGCTCGTGGGACCGCTGGCAGTCCTTTG
CCGCTCTCCAGAAAACAGATGATAACCCCCTTCTGTGGCAAGTGCATATC
ACCCTGAATCCTGGCACTGTTCTGTTCAAGTTTGTCGTCGACAACGACTG
GGTCTATGCTCCAAACTACAAGCATATCTCCGATGGATTTGGTGGTATGA
ACAACGAACGGCACATCGAGCCACTGAAAGGAATAGTTAGCGCGGAGCCT
GAGCCGCAAGGGAATACCCAACCAACCGACTCCGAACCTGCAATTCCTTC
CACATACGCGTCTGTTCGTGAGGTTGCAGATGTTGACTTCCGCCATCACC
GTCAGCTACTTCCATCTGTTCACCACTCACACGACGAGGCCATTGCGAGT
GAACACGAGCAGAGTGAGACGCAGACCGACTCGGCACAACAACCAGATGA
ACCTGCACAGAGTGCAATCCCAACACTTTCTAAAGTCGAGGGCGTACAGC
ACACTAAATCAAATCCTCCATCTGGAGCAGTCACATTTGAATACCCATGT
GAAAAACCGTATGAGAATGTGTCGGTAAGGGGGTCTTGGGATGGATGGAA
AGTACCTCACCCTTTAGTATTGTCGGAAGAACACGGGACCTGGTCTGCCG
ACATCAATCTCCCCGTTGGGAGTTTCCTGTTCAAATTTATCGTAGACGAG
CAATGGACCCATTCTGCCGAGTACGAGGTCCAATCAGATGACTTTGGAGG
GTTTAACAATGTTATCAACGTGACTGCATCGGATTCCATTTTGGGCGACA
CTTGTGAGTTTTCTGATGCGTTGGACACTGTGTTGCAGCCTCGAAGCGGT
GAAGTAGGAAGCGAAACATTGAGCGCGAGAAAAGAAGATGTGTACCCAGT
GGAAAATTTGAATGCGTCCGATCATGAGGATCCCACGTTTAACCCCATAT
CCCCTCAAGCGCGAGAAAACATTGAAGAGGAAAATCATGCAGAACAGCAG
GGAGAAGTTCATCCTGAATTGGAACAGGAGCCGAGCATCGATCAAGAACC
CAAGTCGGTGGGCTCCGACAAGCCTGAGGAAACAGAACCAACCCCGCATG
TCTCAGATGTAGAGGATAAGCTGGAGGCCAAAGAGAGATCGATTGCTGAA
GAAACATATCTTTCACAGAAAGAAGACAGTCCTGAGACTGAACAAGCAGA
AAGCACAAACGTAATACCAGATTCTGAGGCTGTTAACGGCGACCACGATG
CACCAAACTCAGGTTCTGAACTCGGGTCTCGTGTACCTGTTCAGGATCTG
GATGCATCTTCTGAGGAACATGTCGAGGCAGATCAAGCAGAAAAATCAAA
CGGCGAAAAGCTTTCCGATGCAGAAGAGGTTCTTGTAGGAATCATAAATG
AAAGTGGTGGACGCGAAAAGGAGGAGGAGAGAAATGATGGCCGGGGTTGC
AGTATTTGCTGA
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