Ggra2180.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2180.t1
Unique Name	Ggra2180.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	490

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:567501..568970 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2180	Ggra2180	Gracilaria gracilis GNS1m male	gene	tig00000900_pilon 567501..568970 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2180.t1.start1	Ggra2180.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000900_pilon 567501..567503 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2180.t1.CDS1	Ggra2180.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 567501..568970 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2180.t1.exon1	Ggra2180.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 567501..568970 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2180.t1.stop1	Ggra2180.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000900_pilon 568968..568970 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2180.t1	Ggra2180.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000900_pilon 567501..568970 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000900_pilon:567501..568970+
coding sequence from alignment at tig00000900_pilon:567501..568970+

mRNA sequence

>Ggra2180.t1 ID=Ggra2180.t1|Name=Ggra2180.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=490bp
MYALRRLVLHKLWVFVYRTFGKKLFGNRYTYLSTENGQLFNLFCRMGQYD
FNLPNLFSDYEPETSHSPVLEFTHGTEVYSVSLFTGAVLIDGERAGFLSL
DEGNLLNVNILAELFRAMIKNDHGASVIEIVLRRGTNSGDPNAVHAFQSD
QDFLRWLKKTWAQLNEQDNPPSKEARLMYASVVFKYKTSPRFVPFKMKIG
YTEGEHCVHAGSRRLLVSTLSEGRADLGIEVSWIYPFPCEGDIELNTYCD
LDIHSTVVKRYICLYREKCRVDSSTHCLRKVFWHEEGAQIECHVYRRIIA
WMYILLCIMFSICVTIFNFMNRDTITERWVDGTSVATILLVSFFGLVKLT
SEDPNAVRNRLSGVKVFRSMRQVCRYANVTETQAKFILDALDEPARWISN
HNTCAMDVTCAGSIQFSRGSTATEVMGMGKLLVYNVESGKLRLYDAVRDR
YRQAVWKSRKVVHVDSEKVIDGGSPSEMDIIVRGDVVME*

spliced messenger RNA

>Ggra2180.t1 ID=Ggra2180.t1|Name=Ggra2180.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1470bp|location=Sequence derived from alignment at tig00000900_pilon:567501..568970+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGCTTTGAGACGCCTGGTTCTGCATAAGCTGTGGGTGTTCGTCTA
TAGGACTTTTGGTAAGAAATTGTTCGGCAATCGGTACACATACCTTTCTA
CGGAGAATGGCCAATTGTTCAACTTGTTTTGTAGGATGGGGCAATATGAT
TTCAACCTACCAAACTTGTTTAGCGACTATGAGCCTGAAACTTCTCACAG
TCCGGTATTGGAGTTCACGCACGGGACAGAAGTGTATTCTGTTTCACTTT
TTACGGGGGCAGTACTCATTGACGGTGAACGCGCAGGATTTCTTAGTCTC
GATGAAGGAAACCTGCTCAACGTCAACATTCTCGCTGAATTGTTTAGAGC
AATGATAAAGAACGATCATGGCGCATCTGTTATTGAGATTGTCTTAAGAA
GGGGGACAAATAGTGGGGACCCCAATGCGGTTCATGCCTTTCAAAGTGAC
CAGGATTTTCTCCGATGGCTAAAGAAAACATGGGCTCAATTAAACGAACA
AGATAACCCACCATCGAAAGAAGCCAGGCTCATGTATGCTTCTGTTGTGT
TCAAATACAAAACAAGCCCCCGATTTGTTCCTTTTAAAATGAAAATTGGC
TACACAGAGGGCGAGCACTGTGTACATGCTGGTAGTAGACGGTTGCTGGT
TTCGACTCTCAGTGAGGGCAGAGCCGATTTGGGTATAGAAGTGTCATGGA
TTTATCCTTTTCCTTGTGAAGGAGACATAGAACTAAATACCTATTGTGAC
CTGGATATTCACTCGACCGTTGTCAAGAGGTATATATGCCTTTACCGTGA
AAAGTGTCGAGTCGATTCGTCAACCCACTGCCTCAGGAAGGTATTTTGGC
ATGAAGAAGGAGCGCAAATCGAATGTCATGTTTACCGGAGAATTATTGCT
TGGATGTACATTTTGTTATGCATTATGTTCAGTATATGTGTGACAATATT
CAACTTCATGAATAGAGATACTATTACTGAAAGATGGGTGGACGGAACAT
CTGTGGCAACAATTTTGCTAGTCTCTTTCTTCGGCCTTGTGAAATTGACA
AGCGAGGATCCAAACGCAGTGCGGAACAGGCTTTCAGGCGTTAAAGTTTT
TCGATCCATGCGCCAAGTATGTAGATATGCGAACGTGACGGAGACACAAG
CGAAGTTTATTCTAGACGCCCTTGACGAACCTGCACGATGGATTTCTAAC
CATAATACCTGCGCAATGGATGTAACGTGTGCGGGATCCATTCAATTTAG
TAGAGGCTCCACAGCGACAGAAGTGATGGGGATGGGAAAGCTGTTGGTGT
ACAATGTTGAAAGTGGGAAACTTCGATTATATGATGCTGTTCGGGATCGA
TACCGACAAGCTGTCTGGAAAAGTAGAAAAGTTGTACATGTGGATTCTGA
AAAGGTTATAGACGGAGGCTCTCCGAGCGAAATGGATATTATAGTTCGTG
GAGATGTAGTGATGGAGTGA

protein sequence of Ggra2180.t1

>Ggra2180.t1 ID=Ggra2180.t1|Name=Ggra2180.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=490bp
MYALRRLVLHKLWVFVYRTFGKKLFGNRYTYLSTENGQLFNLFCRMGQYD
FNLPNLFSDYEPETSHSPVLEFTHGTEVYSVSLFTGAVLIDGERAGFLSL
DEGNLLNVNILAELFRAMIKNDHGASVIEIVLRRGTNSGDPNAVHAFQSD
QDFLRWLKKTWAQLNEQDNPPSKEARLMYASVVFKYKTSPRFVPFKMKIG
YTEGEHCVHAGSRRLLVSTLSEGRADLGIEVSWIYPFPCEGDIELNTYCD
LDIHSTVVKRYICLYREKCRVDSSTHCLRKVFWHEEGAQIECHVYRRIIA
WMYILLCIMFSICVTIFNFMNRDTITERWVDGTSVATILLVSFFGLVKLT
SEDPNAVRNRLSGVKVFRSMRQVCRYANVTETQAKFILDALDEPARWISN
HNTCAMDVTCAGSIQFSRGSTATEVMGMGKLLVYNVESGKLRLYDAVRDR
YRQAVWKSRKVVHVDSEKVIDGGSPSEMDIIVRGDVVME*

mRNA from alignment at tig00000900_pilon:567501..568970+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2180.t1 ID=Ggra2180.t1|Name=Ggra2180.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1470bp|location=Sequence derived from alignment at tig00000900_pilon:567501..568970+ (Gracilaria gracilis GNS1m male)
ATGTACGCTTTGAGACGCCTGGTTCTGCATAAGCTGTGGGTGTTCGTCTA
TAGGACTTTTGGTAAGAAATTGTTCGGCAATCGGTACACATACCTTTCTA
CGGAGAATGGCCAATTGTTCAACTTGTTTTGTAGGATGGGGCAATATGAT
TTCAACCTACCAAACTTGTTTAGCGACTATGAGCCTGAAACTTCTCACAG
TCCGGTATTGGAGTTCACGCACGGGACAGAAGTGTATTCTGTTTCACTTT
TTACGGGGGCAGTACTCATTGACGGTGAACGCGCAGGATTTCTTAGTCTC
GATGAAGGAAACCTGCTCAACGTCAACATTCTCGCTGAATTGTTTAGAGC
AATGATAAAGAACGATCATGGCGCATCTGTTATTGAGATTGTCTTAAGAA
GGGGGACAAATAGTGGGGACCCCAATGCGGTTCATGCCTTTCAAAGTGAC
CAGGATTTTCTCCGATGGCTAAAGAAAACATGGGCTCAATTAAACGAACA
AGATAACCCACCATCGAAAGAAGCCAGGCTCATGTATGCTTCTGTTGTGT
TCAAATACAAAACAAGCCCCCGATTTGTTCCTTTTAAAATGAAAATTGGC
TACACAGAGGGCGAGCACTGTGTACATGCTGGTAGTAGACGGTTGCTGGT
TTCGACTCTCAGTGAGGGCAGAGCCGATTTGGGTATAGAAGTGTCATGGA
TTTATCCTTTTCCTTGTGAAGGAGACATAGAACTAAATACCTATTGTGAC
CTGGATATTCACTCGACCGTTGTCAAGAGGTATATATGCCTTTACCGTGA
AAAGTGTCGAGTCGATTCGTCAACCCACTGCCTCAGGAAGGTATTTTGGC
ATGAAGAAGGAGCGCAAATCGAATGTCATGTTTACCGGAGAATTATTGCT
TGGATGTACATTTTGTTATGCATTATGTTCAGTATATGTGTGACAATATT
CAACTTCATGAATAGAGATACTATTACTGAAAGATGGGTGGACGGAACAT
CTGTGGCAACAATTTTGCTAGTCTCTTTCTTCGGCCTTGTGAAATTGACA
AGCGAGGATCCAAACGCAGTGCGGAACAGGCTTTCAGGCGTTAAAGTTTT
TCGATCCATGCGCCAAGTATGTAGATATGCGAACGTGACGGAGACACAAG
CGAAGTTTATTCTAGACGCCCTTGACGAACCTGCACGATGGATTTCTAAC
CATAATACCTGCGCAATGGATGTAACGTGTGCGGGATCCATTCAATTTAG
TAGAGGCTCCACAGCGACAGAAGTGATGGGGATGGGAAAGCTGTTGGTGT
ACAATGTTGAAAGTGGGAAACTTCGATTATATGATGCTGTTCGGGATCGA
TACCGACAAGCTGTCTGGAAAAGTAGAAAAGTTGTACATGTGGATTCTGA
AAAGGTTATAGACGGAGGCTCTCCGAGCGAAATGGATATTATAGTTCGTG
GAGATGTAGTGATGGAGTGA

Coding sequence (CDS) from alignment at tig00000900_pilon:567501..568970+

>Ggra2180.t1 ID=Ggra2180.t1|Name=Ggra2180.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1470bp|location=Sequence derived from alignment at tig00000900_pilon:567501..568970+ (Gracilaria gracilis GNS1m male)
ATGTACGCTTTGAGACGCCTGGTTCTGCATAAGCTGTGGGTGTTCGTCTA
TAGGACTTTTGGTAAGAAATTGTTCGGCAATCGGTACACATACCTTTCTA
CGGAGAATGGCCAATTGTTCAACTTGTTTTGTAGGATGGGGCAATATGAT
TTCAACCTACCAAACTTGTTTAGCGACTATGAGCCTGAAACTTCTCACAG
TCCGGTATTGGAGTTCACGCACGGGACAGAAGTGTATTCTGTTTCACTTT
TTACGGGGGCAGTACTCATTGACGGTGAACGCGCAGGATTTCTTAGTCTC
GATGAAGGAAACCTGCTCAACGTCAACATTCTCGCTGAATTGTTTAGAGC
AATGATAAAGAACGATCATGGCGCATCTGTTATTGAGATTGTCTTAAGAA
GGGGGACAAATAGTGGGGACCCCAATGCGGTTCATGCCTTTCAAAGTGAC
CAGGATTTTCTCCGATGGCTAAAGAAAACATGGGCTCAATTAAACGAACA
AGATAACCCACCATCGAAAGAAGCCAGGCTCATGTATGCTTCTGTTGTGT
TCAAATACAAAACAAGCCCCCGATTTGTTCCTTTTAAAATGAAAATTGGC
TACACAGAGGGCGAGCACTGTGTACATGCTGGTAGTAGACGGTTGCTGGT
TTCGACTCTCAGTGAGGGCAGAGCCGATTTGGGTATAGAAGTGTCATGGA
TTTATCCTTTTCCTTGTGAAGGAGACATAGAACTAAATACCTATTGTGAC
CTGGATATTCACTCGACCGTTGTCAAGAGGTATATATGCCTTTACCGTGA
AAAGTGTCGAGTCGATTCGTCAACCCACTGCCTCAGGAAGGTATTTTGGC
ATGAAGAAGGAGCGCAAATCGAATGTCATGTTTACCGGAGAATTATTGCT
TGGATGTACATTTTGTTATGCATTATGTTCAGTATATGTGTGACAATATT
CAACTTCATGAATAGAGATACTATTACTGAAAGATGGGTGGACGGAACAT
CTGTGGCAACAATTTTGCTAGTCTCTTTCTTCGGCCTTGTGAAATTGACA
AGCGAGGATCCAAACGCAGTGCGGAACAGGCTTTCAGGCGTTAAAGTTTT
TCGATCCATGCGCCAAGTATGTAGATATGCGAACGTGACGGAGACACAAG
CGAAGTTTATTCTAGACGCCCTTGACGAACCTGCACGATGGATTTCTAAC
CATAATACCTGCGCAATGGATGTAACGTGTGCGGGATCCATTCAATTTAG
TAGAGGCTCCACAGCGACAGAAGTGATGGGGATGGGAAAGCTGTTGGTGT
ACAATGTTGAAAGTGGGAAACTTCGATTATATGATGCTGTTCGGGATCGA
TACCGACAAGCTGTCTGGAAAAGTAGAAAAGTTGTACATGTGGATTCTGA
AAAGGTTATAGACGGAGGCTCTCCGAGCGAAATGGATATTATAGTTCGTG
GAGATGTAGTGATGGAGTGA