Ggra2179.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2179.t1
Unique NameGgra2179.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length292
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:565145..566020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8081.XP_008411650.1
Preferred nameSRM
PFAMsSpermine_synt_N,Spermine_synth
Max annot lvl33208|Metazoa
KEGG rclassRC00021,RC00053
KEGG koko:K00797
KEGG ReactionR01920,R02869,R08359
KEGG Pathwayko00270,ko00330,ko00410,ko00480,ko01100,map00270,map00330,map00410,map00480,map01100
KEGG ModuleM00034,M00133
GOsGO:0003674,GO:0003824,GO:0004766,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0010033,GO:0016740,GO:0016765,GO:0034097,GO:0034641,GO:0042221,GO:0042401,GO:0042802,GO:0042803,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046983,GO:0050896,GO:0051716,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576,GO:1990823,GO:1990830
Evalue4.78e-134
EggNOG OGsCOG0421@1|root,KOG1562@2759|Eukaryota,39J87@33154|Opisthokonta,3BCX8@33208|Metazoa,3D093@33213|Bilateria,4873X@7711|Chordata,48XN6@7742|Vertebrata,49QKA@7898|Actinopterygii
EC2.5.1.16
DescriptionBelongs to the spermidine spermine synthase family
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2179Ggra2179Gracilaria gracilis GNS1m malegenetig00000900_pilon 565145..566020 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2179.t1.stop1Ggra2179.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 565145..565147 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2179.t1.CDS1Ggra2179.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 565145..566020 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2179.t1.exon1Ggra2179.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 565145..566020 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2179.t1.start1Ggra2179.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 566018..566020 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2179.t1Ggra2179.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 565145..566020 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2179.t1 ID=Ggra2179.t1|Name=Ggra2179.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=292bp
MECNSSELIKDGWFMEKCSLWPGQAMSLEVEEVLEHCKSKYQDILVFKSK
SYGNVLVLDGIIQCTERDEFAYQEMIAHIPLFSHPNPENILIVGGGDGGV
IREVLKHPKVKKAVLCEIDEKVIEVSKKHLPSMSSSFSDERTEVLIIDGM
EFMKDKEAEFDVIITDSSDPIGPAKTLFEMTYYELMHKSLKPGGLVCSQG
ECMWLHASLIQPLIWSCRRIYAMVEYAYTTIPTYPSGQIGFILCSKDENT
RFRIPLRKPTEDMLSNLRYYNSEIHSAAFVLPNFARRALLS*
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spliced messenger RNA

>Ggra2179.t1 ID=Ggra2179.t1|Name=Ggra2179.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000900_pilon:565145..566020- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTGCAACAGTTCGGAATTGATAAAGGATGGATGGTTCATGGAAAA
ATGTTCTTTATGGCCTGGGCAGGCTATGAGTCTTGAAGTTGAAGAAGTAT
TGGAGCATTGCAAGTCCAAGTACCAGGACATCTTGGTCTTTAAATCAAAA
TCATACGGTAACGTTCTTGTTCTTGACGGAATTATTCAATGCACAGAGCG
TGACGAATTTGCTTATCAGGAAATGATTGCTCACATACCTTTGTTCTCAC
ACCCTAATCCTGAGAATATTCTAATCGTCGGTGGAGGTGATGGGGGTGTC
ATTAGAGAAGTTCTGAAACATCCTAAGGTGAAGAAAGCTGTACTGTGCGA
AATTGATGAGAAAGTCATCGAAGTGTCGAAGAAACATCTTCCGAGCATGT
CTTCGTCGTTCTCTGATGAAAGAACCGAAGTATTAATCATAGACGGTATG
GAATTTATGAAGGACAAAGAAGCAGAATTCGACGTTATCATTACCGATTC
ATCAGATCCCATTGGGCCAGCGAAGACCCTGTTTGAGATGACCTATTACG
AACTTATGCACAAGAGTCTCAAGCCTGGCGGTTTAGTTTGTTCTCAAGGT
GAATGCATGTGGCTTCATGCCAGCCTCATCCAGCCGCTCATTTGGTCATG
CAGAAGAATATATGCTATGGTGGAATATGCTTATACCACAATTCCGACTT
ATCCATCCGGGCAAATTGGATTCATTCTGTGTTCAAAGGATGAGAACACG
AGATTTCGCATTCCTTTACGAAAGCCGACGGAAGATATGTTATCAAACTT
GCGTTATTACAATAGCGAGATACATTCAGCGGCGTTTGTGCTGCCAAACT
TTGCAAGAAGAGCTCTTCTTTCTTAG
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protein sequence of Ggra2179.t1

>Ggra2179.t1 ID=Ggra2179.t1|Name=Ggra2179.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=292bp
MECNSSELIKDGWFMEKCSLWPGQAMSLEVEEVLEHCKSKYQDILVFKSK
SYGNVLVLDGIIQCTERDEFAYQEMIAHIPLFSHPNPENILIVGGGDGGV
IREVLKHPKVKKAVLCEIDEKVIEVSKKHLPSMSSSFSDERTEVLIIDGM
EFMKDKEAEFDVIITDSSDPIGPAKTLFEMTYYELMHKSLKPGGLVCSQG
ECMWLHASLIQPLIWSCRRIYAMVEYAYTTIPTYPSGQIGFILCSKDENT
RFRIPLRKPTEDMLSNLRYYNSEIHSAAFVLPNFARRALLS*
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mRNA from alignment at tig00000900_pilon:565145..566020-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2179.t1 ID=Ggra2179.t1|Name=Ggra2179.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000900_pilon:565145..566020- (Gracilaria gracilis GNS1m male)
ATGGAGTGCAACAGTTCGGAATTGATAAAGGATGGATGGTTCATGGAAAA
ATGTTCTTTATGGCCTGGGCAGGCTATGAGTCTTGAAGTTGAAGAAGTAT
TGGAGCATTGCAAGTCCAAGTACCAGGACATCTTGGTCTTTAAATCAAAA
TCATACGGTAACGTTCTTGTTCTTGACGGAATTATTCAATGCACAGAGCG
TGACGAATTTGCTTATCAGGAAATGATTGCTCACATACCTTTGTTCTCAC
ACCCTAATCCTGAGAATATTCTAATCGTCGGTGGAGGTGATGGGGGTGTC
ATTAGAGAAGTTCTGAAACATCCTAAGGTGAAGAAAGCTGTACTGTGCGA
AATTGATGAGAAAGTCATCGAAGTGTCGAAGAAACATCTTCCGAGCATGT
CTTCGTCGTTCTCTGATGAAAGAACCGAAGTATTAATCATAGACGGTATG
GAATTTATGAAGGACAAAGAAGCAGAATTCGACGTTATCATTACCGATTC
ATCAGATCCCATTGGGCCAGCGAAGACCCTGTTTGAGATGACCTATTACG
AACTTATGCACAAGAGTCTCAAGCCTGGCGGTTTAGTTTGTTCTCAAGGT
GAATGCATGTGGCTTCATGCCAGCCTCATCCAGCCGCTCATTTGGTCATG
CAGAAGAATATATGCTATGGTGGAATATGCTTATACCACAATTCCGACTT
ATCCATCCGGGCAAATTGGATTCATTCTGTGTTCAAAGGATGAGAACACG
AGATTTCGCATTCCTTTACGAAAGCCGACGGAAGATATGTTATCAAACTT
GCGTTATTACAATAGCGAGATACATTCAGCGGCGTTTGTGCTGCCAAACT
TTGCAAGAAGAGCTCTTCTTTCTTAG
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Coding sequence (CDS) from alignment at tig00000900_pilon:565145..566020-

>Ggra2179.t1 ID=Ggra2179.t1|Name=Ggra2179.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=876bp|location=Sequence derived from alignment at tig00000900_pilon:565145..566020- (Gracilaria gracilis GNS1m male)
ATGGAGTGCAACAGTTCGGAATTGATAAAGGATGGATGGTTCATGGAAAA
ATGTTCTTTATGGCCTGGGCAGGCTATGAGTCTTGAAGTTGAAGAAGTAT
TGGAGCATTGCAAGTCCAAGTACCAGGACATCTTGGTCTTTAAATCAAAA
TCATACGGTAACGTTCTTGTTCTTGACGGAATTATTCAATGCACAGAGCG
TGACGAATTTGCTTATCAGGAAATGATTGCTCACATACCTTTGTTCTCAC
ACCCTAATCCTGAGAATATTCTAATCGTCGGTGGAGGTGATGGGGGTGTC
ATTAGAGAAGTTCTGAAACATCCTAAGGTGAAGAAAGCTGTACTGTGCGA
AATTGATGAGAAAGTCATCGAAGTGTCGAAGAAACATCTTCCGAGCATGT
CTTCGTCGTTCTCTGATGAAAGAACCGAAGTATTAATCATAGACGGTATG
GAATTTATGAAGGACAAAGAAGCAGAATTCGACGTTATCATTACCGATTC
ATCAGATCCCATTGGGCCAGCGAAGACCCTGTTTGAGATGACCTATTACG
AACTTATGCACAAGAGTCTCAAGCCTGGCGGTTTAGTTTGTTCTCAAGGT
GAATGCATGTGGCTTCATGCCAGCCTCATCCAGCCGCTCATTTGGTCATG
CAGAAGAATATATGCTATGGTGGAATATGCTTATACCACAATTCCGACTT
ATCCATCCGGGCAAATTGGATTCATTCTGTGTTCAAAGGATGAGAACACG
AGATTTCGCATTCCTTTACGAAAGCCGACGGAAGATATGTTATCAAACTT
GCGTTATTACAATAGCGAGATACATTCAGCGGCGTTTGTGCTGCCAAACT
TTGCAAGAAGAGCTCTTCTTTCTTAG
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