Ggra2176.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2176.t1
Unique Name	Ggra2176.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	661

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:558863..561850 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005702812.1
PFAMs	GFO_IDH_MocA,GFO_IDH_MocA_C
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00182
KEGG ko	ko:K00010
KEGG Reaction	R01183,R09951
KEGG Pathway	ko00521,ko00562,ko01100,ko01120,ko01130,map00521,map00562,map01100,map01120,map01130
Evalue	3.38e-176
EggNOG OGs	COG0673@1\|root,2RTD3@2759\|Eukaryota
EC	1.1.1.18,1.1.1.369
Description	Oxidoreductase family, NAD-binding Rossmann fold
COG category	S
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2176	Ggra2176	Gracilaria gracilis GNS1m male	gene	tig00000900_pilon 558863..561850 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2176.t1	Ggra2176.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000900_pilon 558863..561850 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2176.t1.stop1	Ggra2176.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000900_pilon 558863..558865 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2176.t1.CDS1	Ggra2176.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 558863..559628 -
Ggra2176.t1.CDS2	Ggra2176.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 560634..561850 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2176.t1.exon1	Ggra2176.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 558863..559628 -
Ggra2176.t1.exon2	Ggra2176.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 560634..561850 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2176.t1.intron1	Ggra2176.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000900_pilon 559629..560633 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2176.t1.start1	Ggra2176.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000900_pilon 561848..561850 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000900_pilon:558863..561850-
coding sequence from alignment at tig00000900_pilon:558863..561850-

mRNA sequence

>Ggra2176.t1 ID=Ggra2176.t1|Name=Ggra2176.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=661bp
MTAFVPSSSTSQWIRPSTAHPNRSHAALSPRSVRHASVTMSIPVPKESLK
AITFTEDEPRLNIGIIGAGRIGQVHADNITFRLRNANLVGVSSGSKVLAE
RCSLEHGCQPYYDYHDLIENPAVDAVCICSASNQHTTQIIAAARAGKHIF
CEKPIDTSLDVIDKALVEVRKAGVKLQVGFNRRFDQNYRRVRKAIENNEI
GDPQIMHIVSRDPSPPPIEYVKNSGGIWMDCSIHDMDMARYLIGSEVEDV
YTLGAVNINPEIAEYGDVDTSIVTLRFKNGVIGTIDNSRQAVYGYDQRCE
VLGSGGSIHINNNYQNSAVISNSAAVMRDLPLNFFMDRYTDSFIVELNEF
CDAVLHDKPVPCTGLDGRAPVVIALAARKSFQERRPVKISEADQPLPSEL
VGWDGQSTKMQAVTASPKVQITLYGSQVSNYTARCRYLIRRKNLPEEMFS
LRSPKDLGGLKTGPYLELNPLGKMPLLVISKPGCEDEALFESSIICEYLA
EEFADWKPNFRPDSSEARAKARLIANLLDIYVGPHHPYMYKKLEGDRVAG
TQKMIQGFNAIEHVLDPSGPYATGKSLSIADCCLLGNFPFYDYMLPTFFG
WKPTDGRPKLKAWREHMINESPAARETYSEVFNALHTWWGNDRWVNLGME
ALTARPSLPF*

spliced messenger RNA

>Ggra2176.t1 ID=Ggra2176.t1|Name=Ggra2176.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1983bp|location=Sequence derived from alignment at tig00000900_pilon:558863..561850- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCCTTCGTTCCGTCCTCCTCCACCTCGCAATGGATTCGCCCGTC
TACCGCCCATCCCAACCGCTCCCATGCCGCACTCAGCCCGCGCTCAGTGC
GTCATGCCTCCGTCACCATGTCCATCCCGGTGCCTAAGGAGTCGTTGAAG
GCTATTACTTTCACTGAAGACGAGCCTCGTCTCAACATCGGTATCATTGG
CGCGGGTCGTATTGGTCAGGTGCACGCCGACAACATCACCTTCCGTCTGC
GCAATGCCAACCTTGTCGGCGTCTCATCCGGTTCCAAGGTGCTGGCGGAA
CGCTGCTCTCTCGAGCACGGTTGCCAACCGTACTACGACTACCACGACCT
CATCGAAAACCCCGCCGTCGATGCCGTGTGCATTTGCTCCGCTTCCAACC
AGCATACCACGCAAATCATCGCCGCTGCCCGCGCCGGAAAGCACATCTTC
TGTGAGAAGCCCATTGATACTTCCTTGGATGTCATTGATAAGGCTCTGGT
GGAGGTACGCAAAGCCGGCGTCAAGCTCCAAGTGGGCTTCAATCGTCGCT
TTGACCAAAACTACCGCCGTGTGCGAAAGGCCATCGAGAACAACGAAATC
GGTGACCCGCAGATCATGCACATTGTCAGCAGAGACCCCTCTCCTCCTCC
GATTGAATACGTCAAGAACTCTGGCGGAATCTGGATGGACTGCAGTATCC
ACGACATGGACATGGCCCGCTATCTCATCGGCTCTGAAGTAGAAGACGTG
TACACCCTTGGCGCCGTGAACATCAACCCTGAGATTGCAGAGTACGGCGA
CGTCGATACCAGTATTGTAACCCTTCGTTTCAAGAACGGCGTCATCGGTA
CCATTGACAACTCCCGCCAGGCCGTGTACGGTTATGATCAGCGATGTGAA
GTGCTTGGATCAGGCGGTTCCATCCACATTAACAATAACTACCAGAACTC
TGCTGTCATTTCCAATTCAGCTGCTGTGATGCGTGATTTACCGCTCAACT
TCTTCATGGATCGTTACACCGATTCGTTCATCGTTGAACTCAATGAATTC
TGTGATGCCGTGTTGCACGACAAGCCTGTTCCTTGTACCGGACTTGACGG
ACGCGCACCAGTAGTTATTGCTCTGGCTGCTCGGAAATCGTTCCAAGAAA
GACGACCGGTCAAGATTTCGGAAGCGGACCAGCCTCTCCCATCGGAACTA
GTCGGTTGGGATGGACAGTCCACAAAGATGCAGGCTGTAACAGCATCTCC
CAAGGTTCAGATAACATTGTACGGATCCCAAGTTTCAAATTATACAGCTC
GATGCCGATATCTCATCAGAAGGAAAAACCTTCCAGAAGAAATGTTCTCG
CTCCGCTCACCAAAGGATCTAGGTGGGCTGAAGACCGGTCCCTATCTTGA
ACTCAATCCGTTGGGGAAAATGCCGTTGCTTGTTATCAGCAAGCCAGGCT
GCGAAGATGAGGCTCTTTTTGAGAGCTCTATCATTTGCGAATATCTTGCG
GAAGAATTCGCCGACTGGAAACCAAACTTTAGACCCGATTCATCGGAAGC
GCGTGCGAAAGCAAGACTCATTGCAAACTTGTTAGATATTTACGTTGGAC
CGCACCATCCATATATGTACAAGAAACTGGAAGGGGATCGCGTAGCCGGT
ACTCAGAAGATGATTCAAGGCTTCAACGCTATCGAGCATGTCCTCGATCC
CAGTGGCCCATACGCTACCGGAAAAAGTCTTTCGATAGCTGACTGTTGCC
TGCTGGGCAATTTTCCGTTTTACGATTACATGCTTCCAACTTTCTTTGGA
TGGAAACCCACTGATGGTCGTCCAAAACTGAAAGCTTGGCGAGAACATAT
GATTAACGAGTCACCGGCTGCAAGGGAGACTTATTCGGAAGTCTTTAACG
CCCTCCATACTTGGTGGGGCAATGATCGATGGGTGAATCTTGGTATGGAA
GCACTCACGGCGCGACCTTCTCTTCCTTTTTGA

protein sequence of Ggra2176.t1

>Ggra2176.t1 ID=Ggra2176.t1|Name=Ggra2176.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=661bp
MTAFVPSSSTSQWIRPSTAHPNRSHAALSPRSVRHASVTMSIPVPKESLK
AITFTEDEPRLNIGIIGAGRIGQVHADNITFRLRNANLVGVSSGSKVLAE
RCSLEHGCQPYYDYHDLIENPAVDAVCICSASNQHTTQIIAAARAGKHIF
CEKPIDTSLDVIDKALVEVRKAGVKLQVGFNRRFDQNYRRVRKAIENNEI
GDPQIMHIVSRDPSPPPIEYVKNSGGIWMDCSIHDMDMARYLIGSEVEDV
YTLGAVNINPEIAEYGDVDTSIVTLRFKNGVIGTIDNSRQAVYGYDQRCE
VLGSGGSIHINNNYQNSAVISNSAAVMRDLPLNFFMDRYTDSFIVELNEF
CDAVLHDKPVPCTGLDGRAPVVIALAARKSFQERRPVKISEADQPLPSEL
VGWDGQSTKMQAVTASPKVQITLYGSQVSNYTARCRYLIRRKNLPEEMFS
LRSPKDLGGLKTGPYLELNPLGKMPLLVISKPGCEDEALFESSIICEYLA
EEFADWKPNFRPDSSEARAKARLIANLLDIYVGPHHPYMYKKLEGDRVAG
TQKMIQGFNAIEHVLDPSGPYATGKSLSIADCCLLGNFPFYDYMLPTFFG
WKPTDGRPKLKAWREHMINESPAARETYSEVFNALHTWWGNDRWVNLGME
ALTARPSLPF*

mRNA from alignment at tig00000900_pilon:558863..561850-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2176.t1 ID=Ggra2176.t1|Name=Ggra2176.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2988bp|location=Sequence derived from alignment at tig00000900_pilon:558863..561850- (Gracilaria gracilis GNS1m male)
ATGACTGCCTTCGTTCCGTCCTCCTCCACCTCGCAATGGATTCGCCCGTC
TACCGCCCATCCCAACCGCTCCCATGCCGCACTCAGCCCGCGCTCAGTGC
GTCATGCCTCCGTCACCATGTCCATCCCGGTGCCTAAGGAGTCGTTGAAG
GCTATTACTTTCACTGAAGACGAGCCTCGTCTCAACATCGGTATCATTGG
CGCGGGTCGTATTGGTCAGGTGCACGCCGACAACATCACCTTCCGTCTGC
GCAATGCCAACCTTGTCGGCGTCTCATCCGGTTCCAAGGTGCTGGCGGAA
CGCTGCTCTCTCGAGCACGGTTGCCAACCGTACTACGACTACCACGACCT
CATCGAAAACCCCGCCGTCGATGCCGTGTGCATTTGCTCCGCTTCCAACC
AGCATACCACGCAAATCATCGCCGCTGCCCGCGCCGGAAAGCACATCTTC
TGTGAGAAGCCCATTGATACTTCCTTGGATGTCATTGATAAGGCTCTGGT
GGAGGTACGCAAAGCCGGCGTCAAGCTCCAAGTGGGCTTCAATCGTCGCT
TTGACCAAAACTACCGCCGTGTGCGAAAGGCCATCGAGAACAACGAAATC
GGTGACCCGCAGATCATGCACATTGTCAGCAGAGACCCCTCTCCTCCTCC
GATTGAATACGTCAAGAACTCTGGCGGAATCTGGATGGACTGCAGTATCC
ACGACATGGACATGGCCCGCTATCTCATCGGCTCTGAAGTAGAAGACGTG
TACACCCTTGGCGCCGTGAACATCAACCCTGAGATTGCAGAGTACGGCGA
CGTCGATACCAGTATTGTAACCCTTCGTTTCAAGAACGGCGTCATCGGTA
CCATTGACAACTCCCGCCAGGCCGTGTACGGTTATGATCAGCGATGTGAA
GTGCTTGGATCAGGCGGTTCCATCCACATTAACAATAACTACCAGAACTC
TGCTGTCATTTCCAATTCAGCTGCTGTGATGCGTGATTTACCGCTCAACT
TCTTCATGGATCGTTACACCGATTCGTTCATCGTTGAACTCAATGAATTC
TGTGATGCCGTGTTGCACGACAAGCCTGTTCCTTGTACCGGACTTGACGG
ACGCGCACCAGTAGTTATTGCTCTGGCTGCTCGGAAATCGTTCCAAGAAA
GACGACCGGTCAAGATTTCGGAAGCGGACCAGCCTCTCCCATCGGAACTA
GTCGGTTGGGATGGACAGTAAGTCTTTTCGGACAAACCTTGCTGATAGTT
TTTAATAATTGTTTGACTTCAATGTACCCTTGTACTGTAGTGACCAGTAC
GGCCCGTTGAAGACAAACGACGCAGTCTTCCTTTTGATTCTGGACTCCAT
GATTTGCTTCCAGTATGATACTGTATCTTCTTCCGGCGTCGTTAAAACAT
ACTGTCCTAGTTTTTGTATTATAATGTATCTCCCCCGACTTCATAATAGT
GTCAGGAAGTTGATACTCTGTTCTTCGCACACATAAGCTGCTTCTTGCCG
AATTCATCTGATGCTAGCAAAAAGCAACATACTGTAGATGCCAAAGAGGA
GTCCTGGAAAACGATTTATCCTTCTGGAGCGATTTGGGCTGGCTTTCACA
AGCTTGTCAAAGTTCAAAGCGAGAGAACAATGGGGACCACATAATCTGAA
GCTACGAAGGTATAGAAGCTACGAAGGTATCTCAGTGGAATGCAAAACGG
TGGGAGCCTCGCTGAGGTTTGACTTCGTCAAGGTGATCTCAAGGAAGCGC
TACATACAGTGGGGGATGTCCTATACAGTAGTAATACTAATAATAGTATC
GTGGGCAATGTCCCGGATGGGACAGATACGGTTGCCTGGTACACGTACAC
GTACACGTACACGTACTTACACATACCCTTGTACGCCAAATGAATGCGCC
ACTTGTAAGGACAGGGATAGGGATAAGCGATAATCCTCGCGGGAAGCAAC
CATTGCATAGAGTGAAGTTACTCCCCCTAAACACATAATCTTGCACTCAG
CAATAGAGCCTCACCTGTCGATATGCCTGATCTCACAACTTCGAAAGGCC
ATTTCTGGTTGTGGGATCTAAACATTGTGCGCTTATCGACCGTCACCCTT
TGGGTTATCGCCCGTAACCTACTTTTCTGGCTCTCTCGTTCTTGAACGGA
AATGAATGCATTTGTGTCTTCCCCCCTTTTCACACTGAATACTAAGAAGT
CACCCAACCGCTTGCCATTCAGGTCCACAAAGATGCAGGCTGTAACAGCA
TCTCCCAAGGTTCAGATAACATTGTACGGATCCCAAGTTTCAAATTATAC
AGCTCGATGCCGATATCTCATCAGAAGGAAAAACCTTCCAGAAGAAATGT
TCTCGCTCCGCTCACCAAAGGATCTAGGTGGGCTGAAGACCGGTCCCTAT
CTTGAACTCAATCCGTTGGGGAAAATGCCGTTGCTTGTTATCAGCAAGCC
AGGCTGCGAAGATGAGGCTCTTTTTGAGAGCTCTATCATTTGCGAATATC
TTGCGGAAGAATTCGCCGACTGGAAACCAAACTTTAGACCCGATTCATCG
GAAGCGCGTGCGAAAGCAAGACTCATTGCAAACTTGTTAGATATTTACGT
TGGACCGCACCATCCATATATGTACAAGAAACTGGAAGGGGATCGCGTAG
CCGGTACTCAGAAGATGATTCAAGGCTTCAACGCTATCGAGCATGTCCTC
GATCCCAGTGGCCCATACGCTACCGGAAAAAGTCTTTCGATAGCTGACTG
TTGCCTGCTGGGCAATTTTCCGTTTTACGATTACATGCTTCCAACTTTCT
TTGGATGGAAACCCACTGATGGTCGTCCAAAACTGAAAGCTTGGCGAGAA
CATATGATTAACGAGTCACCGGCTGCAAGGGAGACTTATTCGGAAGTCTT
TAACGCCCTCCATACTTGGTGGGGCAATGATCGATGGGTGAATCTTGGTA
TGGAAGCACTCACGGCGCGACCTTCTCTTCCTTTTTGA

Coding sequence (CDS) from alignment at tig00000900_pilon:558863..561850-

>Ggra2176.t1 ID=Ggra2176.t1|Name=Ggra2176.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1983bp|location=Sequence derived from alignment at tig00000900_pilon:558863..561850- (Gracilaria gracilis GNS1m male)
ATGACTGCCTTCGTTCCGTCCTCCTCCACCTCGCAATGGATTCGCCCGTC
TACCGCCCATCCCAACCGCTCCCATGCCGCACTCAGCCCGCGCTCAGTGC
GTCATGCCTCCGTCACCATGTCCATCCCGGTGCCTAAGGAGTCGTTGAAG
GCTATTACTTTCACTGAAGACGAGCCTCGTCTCAACATCGGTATCATTGG
CGCGGGTCGTATTGGTCAGGTGCACGCCGACAACATCACCTTCCGTCTGC
GCAATGCCAACCTTGTCGGCGTCTCATCCGGTTCCAAGGTGCTGGCGGAA
CGCTGCTCTCTCGAGCACGGTTGCCAACCGTACTACGACTACCACGACCT
CATCGAAAACCCCGCCGTCGATGCCGTGTGCATTTGCTCCGCTTCCAACC
AGCATACCACGCAAATCATCGCCGCTGCCCGCGCCGGAAAGCACATCTTC
TGTGAGAAGCCCATTGATACTTCCTTGGATGTCATTGATAAGGCTCTGGT
GGAGGTACGCAAAGCCGGCGTCAAGCTCCAAGTGGGCTTCAATCGTCGCT
TTGACCAAAACTACCGCCGTGTGCGAAAGGCCATCGAGAACAACGAAATC
GGTGACCCGCAGATCATGCACATTGTCAGCAGAGACCCCTCTCCTCCTCC
GATTGAATACGTCAAGAACTCTGGCGGAATCTGGATGGACTGCAGTATCC
ACGACATGGACATGGCCCGCTATCTCATCGGCTCTGAAGTAGAAGACGTG
TACACCCTTGGCGCCGTGAACATCAACCCTGAGATTGCAGAGTACGGCGA
CGTCGATACCAGTATTGTAACCCTTCGTTTCAAGAACGGCGTCATCGGTA
CCATTGACAACTCCCGCCAGGCCGTGTACGGTTATGATCAGCGATGTGAA
GTGCTTGGATCAGGCGGTTCCATCCACATTAACAATAACTACCAGAACTC
TGCTGTCATTTCCAATTCAGCTGCTGTGATGCGTGATTTACCGCTCAACT
TCTTCATGGATCGTTACACCGATTCGTTCATCGTTGAACTCAATGAATTC
TGTGATGCCGTGTTGCACGACAAGCCTGTTCCTTGTACCGGACTTGACGG
ACGCGCACCAGTAGTTATTGCTCTGGCTGCTCGGAAATCGTTCCAAGAAA
GACGACCGGTCAAGATTTCGGAAGCGGACCAGCCTCTCCCATCGGAACTA
GTCGGTTGGGATGGACAGTCCACAAAGATGCAGGCTGTAACAGCATCTCC
CAAGGTTCAGATAACATTGTACGGATCCCAAGTTTCAAATTATACAGCTC
GATGCCGATATCTCATCAGAAGGAAAAACCTTCCAGAAGAAATGTTCTCG
CTCCGCTCACCAAAGGATCTAGGTGGGCTGAAGACCGGTCCCTATCTTGA
ACTCAATCCGTTGGGGAAAATGCCGTTGCTTGTTATCAGCAAGCCAGGCT
GCGAAGATGAGGCTCTTTTTGAGAGCTCTATCATTTGCGAATATCTTGCG
GAAGAATTCGCCGACTGGAAACCAAACTTTAGACCCGATTCATCGGAAGC
GCGTGCGAAAGCAAGACTCATTGCAAACTTGTTAGATATTTACGTTGGAC
CGCACCATCCATATATGTACAAGAAACTGGAAGGGGATCGCGTAGCCGGT
ACTCAGAAGATGATTCAAGGCTTCAACGCTATCGAGCATGTCCTCGATCC
CAGTGGCCCATACGCTACCGGAAAAAGTCTTTCGATAGCTGACTGTTGCC
TGCTGGGCAATTTTCCGTTTTACGATTACATGCTTCCAACTTTCTTTGGA
TGGAAACCCACTGATGGTCGTCCAAAACTGAAAGCTTGGCGAGAACATAT
GATTAACGAGTCACCGGCTGCAAGGGAGACTTATTCGGAAGTCTTTAACG
CCCTCCATACTTGGTGGGGCAATGATCGATGGGTGAATCTTGGTATGGAA
GCACTCACGGCGCGACCTTCTCTTCCTTTTTGA