Ggra2170.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2170.t1
Unique NameGgra2170.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length389
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:540800..541966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3712.Bo4g195030.1
PFAMsBCIP
Max annot lvl35493|Streptophyta
KEGG koko:K15262
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013
Evalue1.43e-20
EggNOG OGsKOG3034@1|root,KOG3034@2759|Eukaryota,37PZM@33090|Viridiplantae,3G76U@35493|Streptophyta,3HZMH@3699|Brassicales
DescriptionProtein BCCIP homolog
COG categoryK
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2170Ggra2170Gracilaria gracilis GNS1m malegenetig00000900_pilon 540800..541966 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2170.t1.start1Ggra2170.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 540800..540802 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2170.t1.CDS1Ggra2170.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 540800..541966 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2170.t1.exon1Ggra2170.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 540800..541966 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2170.t1.stop1Ggra2170.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 541964..541966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2170.t1Ggra2170.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 540800..541966 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2170.t1 ID=Ggra2170.t1|Name=Ggra2170.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=389bp
MGKRKRNNGSKARRNGRETGAGSSSQAVTKADEAKDVDADCVHYESSSQG
SGPAHARLISEFYKNAFDLRSDSDLEFDSDQDKEENNEFIRSIDLNRNKE
DESDVELSVDFFDPRKDDENTISTLLCKYSKACTSVSKAKEQVTTSGALA
RMVCDQTRVGTTIRLSDDEAAIGFISCVNIREHAKVLRDLKRKLVQVAEK
EKNERFITLLNKCMEGVGRFDSERMGLVLCERVVNMPTMVVGKMLEALFC
EIEWATEDEKTHKQRDAFKFGWYLYIAEVYCYKEENDKEEGDKEGKKKRQ
RTEGKEGEEKLAFARIEDSEWYKHASCSVRWEWGGAEDGVKQKRIAMVVA
SRKVAAIRQAVEQRIGGYNGEEGGDQTAGDQTSHDKEQ*
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spliced messenger RNA

>Ggra2170.t1 ID=Ggra2170.t1|Name=Ggra2170.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000900_pilon:540800..541966+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAAGCGGAAGCGAAACAACGGTTCGAAAGCGAGGCGAAACGGCAG
AGAAACTGGCGCTGGCAGCAGCAGTCAGGCAGTCACAAAGGCGGATGAAG
CCAAGGATGTGGACGCTGATTGCGTGCATTACGAGTCCTCATCACAGGGT
TCCGGCCCCGCGCATGCCAGGCTGATATCAGAGTTTTACAAGAATGCGTT
TGACTTGAGAAGCGATTCAGACCTCGAGTTTGACTCGGACCAGGACAAAG
AGGAAAACAATGAGTTCATTCGCAGCATCGATTTGAACAGAAACAAGGAG
GATGAAAGTGATGTGGAGCTGAGCGTCGATTTTTTTGATCCGCGAAAGGA
TGACGAGAATACTATAAGCACGTTGTTGTGCAAGTATAGCAAGGCTTGCA
CGTCGGTGAGCAAAGCAAAGGAGCAGGTGACGACTAGCGGCGCTCTAGCG
AGAATGGTGTGTGATCAGACTCGAGTGGGTACTACAATCCGTCTGAGCGA
CGACGAGGCAGCTATTGGATTCATTTCATGCGTCAACATTCGAGAACATG
CCAAGGTACTGAGGGACCTGAAGCGCAAGCTGGTTCAAGTGGCAGAAAAG
GAGAAGAACGAACGATTCATCACGCTGCTCAACAAGTGCATGGAGGGCGT
GGGGCGGTTTGACAGCGAGCGCATGGGGCTGGTGCTGTGCGAACGGGTGG
TGAACATGCCGACGATGGTGGTGGGCAAAATGCTGGAGGCGCTGTTCTGC
GAGATCGAGTGGGCGACGGAGGACGAGAAAACGCATAAACAGAGAGACGC
GTTCAAGTTTGGGTGGTACTTGTACATTGCTGAGGTGTACTGCTATAAGG
AGGAAAACGACAAGGAAGAGGGCGACAAAGAAGGCAAGAAGAAGCGGCAG
CGGACGGAGGGCAAGGAGGGGGAGGAGAAGCTGGCGTTTGCTCGGATAGA
GGACAGCGAATGGTACAAACACGCAAGCTGCAGCGTGAGGTGGGAATGGG
GCGGAGCGGAGGACGGCGTGAAGCAGAAGCGCATCGCGATGGTGGTGGCG
AGCAGGAAAGTGGCGGCAATCCGGCAGGCGGTGGAGCAACGGATAGGCGG
TTACAACGGCGAGGAGGGCGGCGACCAAACTGCGGGCGACCAAACGTCGC
ACGACAAGGAGCAGTAG
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protein sequence of Ggra2170.t1

>Ggra2170.t1 ID=Ggra2170.t1|Name=Ggra2170.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=389bp
MGKRKRNNGSKARRNGRETGAGSSSQAVTKADEAKDVDADCVHYESSSQG
SGPAHARLISEFYKNAFDLRSDSDLEFDSDQDKEENNEFIRSIDLNRNKE
DESDVELSVDFFDPRKDDENTISTLLCKYSKACTSVSKAKEQVTTSGALA
RMVCDQTRVGTTIRLSDDEAAIGFISCVNIREHAKVLRDLKRKLVQVAEK
EKNERFITLLNKCMEGVGRFDSERMGLVLCERVVNMPTMVVGKMLEALFC
EIEWATEDEKTHKQRDAFKFGWYLYIAEVYCYKEENDKEEGDKEGKKKRQ
RTEGKEGEEKLAFARIEDSEWYKHASCSVRWEWGGAEDGVKQKRIAMVVA
SRKVAAIRQAVEQRIGGYNGEEGGDQTAGDQTSHDKEQ*
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mRNA from alignment at tig00000900_pilon:540800..541966+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2170.t1 ID=Ggra2170.t1|Name=Ggra2170.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000900_pilon:540800..541966+ (Gracilaria gracilis GNS1m male)
ATGGGCAAGCGGAAGCGAAACAACGGTTCGAAAGCGAGGCGAAACGGCAG
AGAAACTGGCGCTGGCAGCAGCAGTCAGGCAGTCACAAAGGCGGATGAAG
CCAAGGATGTGGACGCTGATTGCGTGCATTACGAGTCCTCATCACAGGGT
TCCGGCCCCGCGCATGCCAGGCTGATATCAGAGTTTTACAAGAATGCGTT
TGACTTGAGAAGCGATTCAGACCTCGAGTTTGACTCGGACCAGGACAAAG
AGGAAAACAATGAGTTCATTCGCAGCATCGATTTGAACAGAAACAAGGAG
GATGAAAGTGATGTGGAGCTGAGCGTCGATTTTTTTGATCCGCGAAAGGA
TGACGAGAATACTATAAGCACGTTGTTGTGCAAGTATAGCAAGGCTTGCA
CGTCGGTGAGCAAAGCAAAGGAGCAGGTGACGACTAGCGGCGCTCTAGCG
AGAATGGTGTGTGATCAGACTCGAGTGGGTACTACAATCCGTCTGAGCGA
CGACGAGGCAGCTATTGGATTCATTTCATGCGTCAACATTCGAGAACATG
CCAAGGTACTGAGGGACCTGAAGCGCAAGCTGGTTCAAGTGGCAGAAAAG
GAGAAGAACGAACGATTCATCACGCTGCTCAACAAGTGCATGGAGGGCGT
GGGGCGGTTTGACAGCGAGCGCATGGGGCTGGTGCTGTGCGAACGGGTGG
TGAACATGCCGACGATGGTGGTGGGCAAAATGCTGGAGGCGCTGTTCTGC
GAGATCGAGTGGGCGACGGAGGACGAGAAAACGCATAAACAGAGAGACGC
GTTCAAGTTTGGGTGGTACTTGTACATTGCTGAGGTGTACTGCTATAAGG
AGGAAAACGACAAGGAAGAGGGCGACAAAGAAGGCAAGAAGAAGCGGCAG
CGGACGGAGGGCAAGGAGGGGGAGGAGAAGCTGGCGTTTGCTCGGATAGA
GGACAGCGAATGGTACAAACACGCAAGCTGCAGCGTGAGGTGGGAATGGG
GCGGAGCGGAGGACGGCGTGAAGCAGAAGCGCATCGCGATGGTGGTGGCG
AGCAGGAAAGTGGCGGCAATCCGGCAGGCGGTGGAGCAACGGATAGGCGG
TTACAACGGCGAGGAGGGCGGCGACCAAACTGCGGGCGACCAAACGTCGC
ACGACAAGGAGCAGTAG
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Coding sequence (CDS) from alignment at tig00000900_pilon:540800..541966+

>Ggra2170.t1 ID=Ggra2170.t1|Name=Ggra2170.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1167bp|location=Sequence derived from alignment at tig00000900_pilon:540800..541966+ (Gracilaria gracilis GNS1m male)
ATGGGCAAGCGGAAGCGAAACAACGGTTCGAAAGCGAGGCGAAACGGCAG
AGAAACTGGCGCTGGCAGCAGCAGTCAGGCAGTCACAAAGGCGGATGAAG
CCAAGGATGTGGACGCTGATTGCGTGCATTACGAGTCCTCATCACAGGGT
TCCGGCCCCGCGCATGCCAGGCTGATATCAGAGTTTTACAAGAATGCGTT
TGACTTGAGAAGCGATTCAGACCTCGAGTTTGACTCGGACCAGGACAAAG
AGGAAAACAATGAGTTCATTCGCAGCATCGATTTGAACAGAAACAAGGAG
GATGAAAGTGATGTGGAGCTGAGCGTCGATTTTTTTGATCCGCGAAAGGA
TGACGAGAATACTATAAGCACGTTGTTGTGCAAGTATAGCAAGGCTTGCA
CGTCGGTGAGCAAAGCAAAGGAGCAGGTGACGACTAGCGGCGCTCTAGCG
AGAATGGTGTGTGATCAGACTCGAGTGGGTACTACAATCCGTCTGAGCGA
CGACGAGGCAGCTATTGGATTCATTTCATGCGTCAACATTCGAGAACATG
CCAAGGTACTGAGGGACCTGAAGCGCAAGCTGGTTCAAGTGGCAGAAAAG
GAGAAGAACGAACGATTCATCACGCTGCTCAACAAGTGCATGGAGGGCGT
GGGGCGGTTTGACAGCGAGCGCATGGGGCTGGTGCTGTGCGAACGGGTGG
TGAACATGCCGACGATGGTGGTGGGCAAAATGCTGGAGGCGCTGTTCTGC
GAGATCGAGTGGGCGACGGAGGACGAGAAAACGCATAAACAGAGAGACGC
GTTCAAGTTTGGGTGGTACTTGTACATTGCTGAGGTGTACTGCTATAAGG
AGGAAAACGACAAGGAAGAGGGCGACAAAGAAGGCAAGAAGAAGCGGCAG
CGGACGGAGGGCAAGGAGGGGGAGGAGAAGCTGGCGTTTGCTCGGATAGA
GGACAGCGAATGGTACAAACACGCAAGCTGCAGCGTGAGGTGGGAATGGG
GCGGAGCGGAGGACGGCGTGAAGCAGAAGCGCATCGCGATGGTGGTGGCG
AGCAGGAAAGTGGCGGCAATCCGGCAGGCGGTGGAGCAACGGATAGGCGG
TTACAACGGCGAGGAGGGCGGCGACCAAACTGCGGGCGACCAAACGTCGC
ACGACAAGGAGCAGTAG
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