Ggra2162.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2162.t1
Unique NameGgra2162.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length145
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:472882..473316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6334.EFV54449
Preferred nameLSM1
PFAMsLSM
Max annot lvl33208|Metazoa
KEGG koko:K12620
KEGG Pathwayko03018,map03018
KEGG ModuleM00397
GOsGO:0000288,GO:0000290,GO:0000291,GO:0000339,GO:0000375,GO:0000377,GO:0000398,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005845,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0010721,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019827,GO:0022008,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030424,GO:0030425,GO:0032501,GO:0032502,GO:0032991,GO:0033962,GO:0034518,GO:0034622,GO:0034641,GO:0034655,GO:0035770,GO:0036002,GO:0036464,GO:0036477,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043928,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044297,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060255,GO:0060284,GO:0065003,GO:0065007,GO:0070925,GO:0071044,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097447,GO:0097458,GO:0098727,GO:0120025,GO:0120038,GO:0120114,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1990124,GO:1990726,GO:1990904,GO:2000026
Evalue6.77e-28
EggNOG OGsKOG1782@1|root,KOG1782@2759|Eukaryota,3A6A1@33154|Opisthokonta,3BPNX@33208|Metazoa,3D6FU@33213|Bilateria,40R0P@6231|Nematoda
DescriptionsnRNP Sm proteins
COG categoryA
BRITEko00000,ko00001,ko00002,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2162Ggra2162Gracilaria gracilis GNS1m malegenetig00000900_pilon 472882..473316 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2162.t1.stop1Ggra2162.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 472882..472884 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2162.t1.CDS1Ggra2162.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 472882..473316 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2162.t1.exon1Ggra2162.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 472882..473316 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2162.t1.start1Ggra2162.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 473314..473316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2162.t1Ggra2162.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 472882..473316 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2162.t1 ID=Ggra2162.t1|Name=Ggra2162.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=145bp
MEDFAPLKTAPRTSPSSLDAFKLPGAASLYEQLDKLVLVCLRDGRNFFGW
LRSFDQYANLILDNTVERLSVDNMYADVPMGIFVIRGENVMLLGEVDEQK
ELTVGDSMKQVSEREIRKAMVETKETSSPKTRKAMLEWPIPEEF*
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spliced messenger RNA

>Ggra2162.t1 ID=Ggra2162.t1|Name=Ggra2162.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=435bp|location=Sequence derived from alignment at tig00000900_pilon:472882..473316- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGATTTCGCGCCCTTAAAGACTGCACCCCGGACTTCTCCGTCGAG
TCTGGATGCATTTAAGCTCCCCGGAGCTGCAAGTTTATATGAGCAACTAG
ATAAACTGGTACTTGTATGTCTCAGGGACGGAAGAAACTTTTTTGGTTGG
CTGAGATCGTTTGATCAATATGCAAATCTCATTCTCGACAATACCGTTGA
GCGTCTCTCGGTGGACAACATGTATGCGGATGTTCCGATGGGAATCTTTG
TCATTCGAGGAGAAAATGTAATGCTTCTTGGCGAGGTAGACGAACAGAAA
GAATTAACAGTCGGTGATTCGATGAAGCAGGTTTCAGAACGAGAGATCCG
AAAGGCAATGGTGGAAACTAAGGAGACCTCATCTCCAAAGACAAGAAAAG
CGATGCTTGAGTGGCCAATACCGGAGGAGTTTTGA
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protein sequence of Ggra2162.t1

>Ggra2162.t1 ID=Ggra2162.t1|Name=Ggra2162.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=145bp
MEDFAPLKTAPRTSPSSLDAFKLPGAASLYEQLDKLVLVCLRDGRNFFGW
LRSFDQYANLILDNTVERLSVDNMYADVPMGIFVIRGENVMLLGEVDEQK
ELTVGDSMKQVSEREIRKAMVETKETSSPKTRKAMLEWPIPEEF*
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mRNA from alignment at tig00000900_pilon:472882..473316-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2162.t1 ID=Ggra2162.t1|Name=Ggra2162.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=435bp|location=Sequence derived from alignment at tig00000900_pilon:472882..473316- (Gracilaria gracilis GNS1m male)
ATGGAAGATTTCGCGCCCTTAAAGACTGCACCCCGGACTTCTCCGTCGAG
TCTGGATGCATTTAAGCTCCCCGGAGCTGCAAGTTTATATGAGCAACTAG
ATAAACTGGTACTTGTATGTCTCAGGGACGGAAGAAACTTTTTTGGTTGG
CTGAGATCGTTTGATCAATATGCAAATCTCATTCTCGACAATACCGTTGA
GCGTCTCTCGGTGGACAACATGTATGCGGATGTTCCGATGGGAATCTTTG
TCATTCGAGGAGAAAATGTAATGCTTCTTGGCGAGGTAGACGAACAGAAA
GAATTAACAGTCGGTGATTCGATGAAGCAGGTTTCAGAACGAGAGATCCG
AAAGGCAATGGTGGAAACTAAGGAGACCTCATCTCCAAAGACAAGAAAAG
CGATGCTTGAGTGGCCAATACCGGAGGAGTTTTGA
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Coding sequence (CDS) from alignment at tig00000900_pilon:472882..473316-

>Ggra2162.t1 ID=Ggra2162.t1|Name=Ggra2162.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=435bp|location=Sequence derived from alignment at tig00000900_pilon:472882..473316- (Gracilaria gracilis GNS1m male)
ATGGAAGATTTCGCGCCCTTAAAGACTGCACCCCGGACTTCTCCGTCGAG
TCTGGATGCATTTAAGCTCCCCGGAGCTGCAAGTTTATATGAGCAACTAG
ATAAACTGGTACTTGTATGTCTCAGGGACGGAAGAAACTTTTTTGGTTGG
CTGAGATCGTTTGATCAATATGCAAATCTCATTCTCGACAATACCGTTGA
GCGTCTCTCGGTGGACAACATGTATGCGGATGTTCCGATGGGAATCTTTG
TCATTCGAGGAGAAAATGTAATGCTTCTTGGCGAGGTAGACGAACAGAAA
GAATTAACAGTCGGTGATTCGATGAAGCAGGTTTCAGAACGAGAGATCCG
AAAGGCAATGGTGGAAACTAAGGAGACCTCATCTCCAAAGACAAGAAAAG
CGATGCTTGAGTGGCCAATACCGGAGGAGTTTTGA
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