Ggra2161.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2161.t1
Unique NameGgra2161.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length345
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:471769..472803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_77986
Preferred nameTAD3
PFAMsSET,dCMP_cyt_deam_1
Max annot lvl2759|Eukaryota
KEGG koko:K07117,ko:K15442
GOsGO:0002097,GO:0002100,GO:0003674,GO:0003824,GO:0004000,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006382,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008251,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016553,GO:0016787,GO:0016810,GO:0016814,GO:0019239,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0052717,GO:0052718,GO:0071704,GO:0090304,GO:1901360,GO:1902494
Evalue7.98e-29
EggNOG OGsCOG0590@1|root,KOG2771@2759|Eukaryota
DescriptionRNA modification
COG categoryFJ
BRITEko00000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2161Ggra2161Gracilaria gracilis GNS1m malegenetig00000900_pilon 471769..472803 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2161.t1.start1Ggra2161.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 471769..471771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2161.t1.CDS1Ggra2161.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 471769..472803 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2161.t1.exon1Ggra2161.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 471769..472803 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2161.t1.stop1Ggra2161.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 472801..472803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2161.t1Ggra2161.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 471769..472803 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2161.t1 ID=Ggra2161.t1|Name=Ggra2161.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=345bp
MNTFRSGKNLSSDQDDVCSKILRRYIKQVGISGAENGPRRPQTCTVLVSS
IEPQQASKVMPILSVHFPLNDGLPHLKRVRRINSEKLPGGFRLELVICRQ
EVWEHRTEEAKNALKPFNLTPRKCVVPIAAPLSREELQQWSNLWPLVFKP
GKHSFKPPSSDELKEMYRHICDNVKRGKAIQEPNCAVVATLVHPVSGTVV
ALAADQSHRKAKQSDDSVTSNRCLAHAVMSCLAKFASPHTSVARPQNEED
NVKQKERISSRADCLPFDQYLCTGLDCYVTREPCVMCGMALLHSRIRRVV
FAAFNEENVGGFSEARIHNEAALNHRFEAFIVPLDQIKSCIKRC*
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spliced messenger RNA

>Ggra2161.t1 ID=Ggra2161.t1|Name=Ggra2161.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00000900_pilon:471769..472803+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATACATTCCGATCAGGAAAGAACCTCTCCTCAGATCAAGACGATGT
ATGTTCCAAGATCCTCCGACGATATATAAAACAGGTTGGCATAAGCGGTG
CTGAAAACGGTCCTAGGCGACCCCAAACGTGTACGGTGCTCGTTTCCTCG
ATTGAACCACAGCAGGCAAGCAAAGTAATGCCGATCTTGTCCGTGCATTT
CCCCCTCAATGACGGACTTCCTCATTTGAAACGAGTGAGAAGAATCAATT
CTGAGAAGCTACCTGGTGGGTTCCGGCTAGAGCTAGTAATATGTCGTCAA
GAAGTATGGGAGCATCGAACAGAAGAAGCAAAAAATGCTCTGAAGCCTTT
TAATTTGACACCACGTAAGTGCGTGGTTCCAATTGCAGCGCCACTTTCAC
GTGAAGAACTACAGCAATGGAGCAATCTGTGGCCACTAGTGTTTAAACCT
GGAAAACATTCTTTCAAGCCACCATCATCTGATGAGCTAAAGGAAATGTA
TCGTCATATATGCGACAATGTGAAACGAGGGAAAGCAATTCAAGAGCCTA
ATTGTGCAGTGGTGGCCACTTTGGTTCACCCAGTATCGGGAACGGTTGTG
GCTCTTGCCGCAGATCAATCACATCGGAAAGCCAAGCAATCAGACGATTC
TGTTACGTCTAACAGATGTCTAGCACATGCTGTTATGAGCTGCCTTGCGA
AATTTGCTTCCCCTCACACTTCCGTTGCACGACCACAAAACGAAGAAGAC
AATGTCAAGCAAAAGGAGAGGATATCGTCGAGGGCAGACTGCCTCCCATT
TGACCAATACTTATGCACTGGCTTGGACTGCTATGTGACCAGAGAGCCAT
GTGTTATGTGTGGAATGGCACTACTGCATTCTCGAATTCGCCGTGTAGTT
TTCGCAGCCTTCAATGAAGAAAATGTTGGCGGATTCTCAGAAGCAAGGAT
TCATAACGAGGCTGCCCTAAATCATCGTTTCGAAGCATTCATTGTTCCAC
TTGATCAAATCAAGTCCTGTATTAAACGATGCTAG
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protein sequence of Ggra2161.t1

>Ggra2161.t1 ID=Ggra2161.t1|Name=Ggra2161.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=345bp
MNTFRSGKNLSSDQDDVCSKILRRYIKQVGISGAENGPRRPQTCTVLVSS
IEPQQASKVMPILSVHFPLNDGLPHLKRVRRINSEKLPGGFRLELVICRQ
EVWEHRTEEAKNALKPFNLTPRKCVVPIAAPLSREELQQWSNLWPLVFKP
GKHSFKPPSSDELKEMYRHICDNVKRGKAIQEPNCAVVATLVHPVSGTVV
ALAADQSHRKAKQSDDSVTSNRCLAHAVMSCLAKFASPHTSVARPQNEED
NVKQKERISSRADCLPFDQYLCTGLDCYVTREPCVMCGMALLHSRIRRVV
FAAFNEENVGGFSEARIHNEAALNHRFEAFIVPLDQIKSCIKRC*
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mRNA from alignment at tig00000900_pilon:471769..472803+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2161.t1 ID=Ggra2161.t1|Name=Ggra2161.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00000900_pilon:471769..472803+ (Gracilaria gracilis GNS1m male)
ATGAATACATTCCGATCAGGAAAGAACCTCTCCTCAGATCAAGACGATGT
ATGTTCCAAGATCCTCCGACGATATATAAAACAGGTTGGCATAAGCGGTG
CTGAAAACGGTCCTAGGCGACCCCAAACGTGTACGGTGCTCGTTTCCTCG
ATTGAACCACAGCAGGCAAGCAAAGTAATGCCGATCTTGTCCGTGCATTT
CCCCCTCAATGACGGACTTCCTCATTTGAAACGAGTGAGAAGAATCAATT
CTGAGAAGCTACCTGGTGGGTTCCGGCTAGAGCTAGTAATATGTCGTCAA
GAAGTATGGGAGCATCGAACAGAAGAAGCAAAAAATGCTCTGAAGCCTTT
TAATTTGACACCACGTAAGTGCGTGGTTCCAATTGCAGCGCCACTTTCAC
GTGAAGAACTACAGCAATGGAGCAATCTGTGGCCACTAGTGTTTAAACCT
GGAAAACATTCTTTCAAGCCACCATCATCTGATGAGCTAAAGGAAATGTA
TCGTCATATATGCGACAATGTGAAACGAGGGAAAGCAATTCAAGAGCCTA
ATTGTGCAGTGGTGGCCACTTTGGTTCACCCAGTATCGGGAACGGTTGTG
GCTCTTGCCGCAGATCAATCACATCGGAAAGCCAAGCAATCAGACGATTC
TGTTACGTCTAACAGATGTCTAGCACATGCTGTTATGAGCTGCCTTGCGA
AATTTGCTTCCCCTCACACTTCCGTTGCACGACCACAAAACGAAGAAGAC
AATGTCAAGCAAAAGGAGAGGATATCGTCGAGGGCAGACTGCCTCCCATT
TGACCAATACTTATGCACTGGCTTGGACTGCTATGTGACCAGAGAGCCAT
GTGTTATGTGTGGAATGGCACTACTGCATTCTCGAATTCGCCGTGTAGTT
TTCGCAGCCTTCAATGAAGAAAATGTTGGCGGATTCTCAGAAGCAAGGAT
TCATAACGAGGCTGCCCTAAATCATCGTTTCGAAGCATTCATTGTTCCAC
TTGATCAAATCAAGTCCTGTATTAAACGATGCTAG
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Coding sequence (CDS) from alignment at tig00000900_pilon:471769..472803+

>Ggra2161.t1 ID=Ggra2161.t1|Name=Ggra2161.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1035bp|location=Sequence derived from alignment at tig00000900_pilon:471769..472803+ (Gracilaria gracilis GNS1m male)
ATGAATACATTCCGATCAGGAAAGAACCTCTCCTCAGATCAAGACGATGT
ATGTTCCAAGATCCTCCGACGATATATAAAACAGGTTGGCATAAGCGGTG
CTGAAAACGGTCCTAGGCGACCCCAAACGTGTACGGTGCTCGTTTCCTCG
ATTGAACCACAGCAGGCAAGCAAAGTAATGCCGATCTTGTCCGTGCATTT
CCCCCTCAATGACGGACTTCCTCATTTGAAACGAGTGAGAAGAATCAATT
CTGAGAAGCTACCTGGTGGGTTCCGGCTAGAGCTAGTAATATGTCGTCAA
GAAGTATGGGAGCATCGAACAGAAGAAGCAAAAAATGCTCTGAAGCCTTT
TAATTTGACACCACGTAAGTGCGTGGTTCCAATTGCAGCGCCACTTTCAC
GTGAAGAACTACAGCAATGGAGCAATCTGTGGCCACTAGTGTTTAAACCT
GGAAAACATTCTTTCAAGCCACCATCATCTGATGAGCTAAAGGAAATGTA
TCGTCATATATGCGACAATGTGAAACGAGGGAAAGCAATTCAAGAGCCTA
ATTGTGCAGTGGTGGCCACTTTGGTTCACCCAGTATCGGGAACGGTTGTG
GCTCTTGCCGCAGATCAATCACATCGGAAAGCCAAGCAATCAGACGATTC
TGTTACGTCTAACAGATGTCTAGCACATGCTGTTATGAGCTGCCTTGCGA
AATTTGCTTCCCCTCACACTTCCGTTGCACGACCACAAAACGAAGAAGAC
AATGTCAAGCAAAAGGAGAGGATATCGTCGAGGGCAGACTGCCTCCCATT
TGACCAATACTTATGCACTGGCTTGGACTGCTATGTGACCAGAGAGCCAT
GTGTTATGTGTGGAATGGCACTACTGCATTCTCGAATTCGCCGTGTAGTT
TTCGCAGCCTTCAATGAAGAAAATGTTGGCGGATTCTCAGAAGCAAGGAT
TCATAACGAGGCTGCCCTAAATCATCGTTTCGAAGCATTCATTGTTCCAC
TTGATCAAATCAAGTCCTGTATTAAACGATGCTAG
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