Ggra2153.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2153.t1
Unique NameGgra2153.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length305
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:447422..448444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708853.1
Preferred namePSMD7
PFAMsJAB,MitMem_reg
Max annot lvl2759|Eukaryota
KEGG koko:K03038,ko:K08825,ko:K20306
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
GOsGO:0000003,GO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005819,GO:0005829,GO:0005838,GO:0005856,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006952,GO:0006955,GO:0007088,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008541,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009896,GO:0009965,GO:0009987,GO:0010016,GO:0010154,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0015630,GO:0016192,GO:0016579,GO:0019538,GO:0019941,GO:0022414,GO:0022624,GO:0030071,GO:0030141,GO:0030163,GO:0030425,GO:0031331,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0036477,GO:0042119,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044463,GO:0044464,GO:0045055,GO:0045087,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046903,GO:0046983,GO:0048316,GO:0048366,GO:0048367,GO:0048518,GO:0048522,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051233,GO:0051234,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060205,GO:0061458,GO:0062033,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0072686,GO:0090068,GO:0097447,GO:0097458,GO:0097708,GO:0099402,GO:0099503,GO:0101002,GO:0120025,GO:0120038,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905392,GO:1905818,GO:1905820,GO:1990023,GO:2001252
Evalue8.58e-125
EggNOG OGsCOG1310@1|root,KOG1556@2759|Eukaryota
EC2.7.12.1
Descriptionproteasome-mediated ubiquitin-dependent protein catabolic process
COG categoryZ
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03051,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2153Ggra2153Gracilaria gracilis GNS1m malegenetig00000900_pilon 447422..448444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2153.t1Ggra2153.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 447422..448444 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2153.t1.stop1Ggra2153.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 447422..447424 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2153.t1.CDS1Ggra2153.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 447422..448241 -
Ggra2153.t1.CDS2Ggra2153.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000900_pilon 448350..448444 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2153.t1.exon1Ggra2153.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 447422..448241 -
Ggra2153.t1.exon2Ggra2153.t1.exon2Gracilaria gracilis GNS1m maleexontig00000900_pilon 448350..448444 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2153.t1.intron1Ggra2153.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000900_pilon 448242..448349 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2153.t1.start1Ggra2153.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 448442..448444 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2153.t1 ID=Ggra2153.t1|Name=Ggra2153.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=305bp
MAPSIPTSVAVHPLVLLGVIDHYNRVCEGTKKRAVGVLLGHVVKGKASCT
NCFAVPFEEDEKDPSVWFLDHNFLENMMGMFRKVNARERIVGWYSTGPKI
HTGDLDINELIRSYCANPVLVIVDVKPKDLGLPTEAYLSVEESQKDGAVT
KTFEHLPSEIDATDAEEVGVGHLLRDIKDSSISNLTSDITAKSAALMSLG
DRLAELKTYLEDVAAMNLPVNNEIMYRMQDVFNLLPSLNVPKLVRGFHVK
NNDMMLVLYVSALIRSIIALHDLIDNKVMLKATEKKAAEAAAVTSTANGT
MAAK*
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spliced messenger RNA

>Ggra2153.t1 ID=Ggra2153.t1|Name=Ggra2153.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00000900_pilon:447422..448444- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCATCAATTCCCACCTCCGTAGCTGTTCATCCCCTAGTCCTACT
AGGGGTAATTGATCATTACAACAGAGTCTGCGAAGGTACTAAGAAACGAG
CGGTCGGTGTGCTACTGGGACATGTAGTTAAAGGGAAAGCCAGCTGCACA
AACTGTTTTGCCGTTCCTTTTGAAGAGGATGAAAAGGATCCATCTGTATG
GTTTCTGGACCATAATTTTCTCGAGAACATGATGGGAATGTTTCGAAAGG
TTAACGCGCGAGAACGGATAGTCGGGTGGTATTCAACAGGCCCGAAAATC
CATACCGGTGACCTTGATATCAATGAACTTATCAGATCGTACTGTGCAAA
TCCTGTGCTCGTTATTGTGGATGTGAAGCCCAAAGATCTTGGATTGCCCA
CAGAAGCATATCTTTCTGTGGAAGAATCTCAGAAAGATGGTGCGGTCACA
AAGACTTTTGAACATCTGCCCAGTGAAATTGACGCAACCGATGCAGAGGA
AGTGGGCGTCGGTCATTTACTGCGCGATATCAAAGACTCCTCCATCTCAA
ATCTCACGAGCGATATCACCGCAAAGTCTGCCGCGCTTATGTCACTCGGT
GACCGACTTGCCGAGCTGAAGACTTACCTCGAGGACGTGGCGGCAATGAA
TCTCCCAGTCAACAACGAGATCATGTACAGAATGCAAGATGTTTTCAACT
TGCTCCCTAGTCTAAACGTTCCAAAATTGGTGCGAGGTTTCCACGTGAAG
AACAATGATATGATGCTGGTGCTATATGTTTCTGCCCTGATACGATCTAT
AATCGCGTTGCACGACCTTATTGATAACAAAGTTATGCTCAAGGCCACTG
AGAAGAAAGCTGCTGAGGCTGCTGCCGTGACATCAACAGCGAACGGCACC
ATGGCTGCAAAATAA
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protein sequence of Ggra2153.t1

>Ggra2153.t1 ID=Ggra2153.t1|Name=Ggra2153.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=305bp
MAPSIPTSVAVHPLVLLGVIDHYNRVCEGTKKRAVGVLLGHVVKGKASCT
NCFAVPFEEDEKDPSVWFLDHNFLENMMGMFRKVNARERIVGWYSTGPKI
HTGDLDINELIRSYCANPVLVIVDVKPKDLGLPTEAYLSVEESQKDGAVT
KTFEHLPSEIDATDAEEVGVGHLLRDIKDSSISNLTSDITAKSAALMSLG
DRLAELKTYLEDVAAMNLPVNNEIMYRMQDVFNLLPSLNVPKLVRGFHVK
NNDMMLVLYVSALIRSIIALHDLIDNKVMLKATEKKAAEAAAVTSTANGT
MAAK*
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mRNA from alignment at tig00000900_pilon:447422..448444-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2153.t1 ID=Ggra2153.t1|Name=Ggra2153.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1023bp|location=Sequence derived from alignment at tig00000900_pilon:447422..448444- (Gracilaria gracilis GNS1m male)
ATGGCTCCATCAATTCCCACCTCCGTAGCTGTTCATCCCCTAGTCCTACT
AGGGGTAATTGATCATTACAACAGAGTCTGCGAAGGTACTAAGAAGTAAG
TATTCATTTTGTAATTGCTCTTTCGTGCGCTTCTGTTCTTTGCGATTGCT
CGATCGAAATCTCACAACTCTTTGACCGCAACTCTGCGCCATTGGAATTT
CAGACGAGCGGTCGGTGTGCTACTGGGACATGTAGTTAAAGGGAAAGCCA
GCTGCACAAACTGTTTTGCCGTTCCTTTTGAAGAGGATGAAAAGGATCCA
TCTGTATGGTTTCTGGACCATAATTTTCTCGAGAACATGATGGGAATGTT
TCGAAAGGTTAACGCGCGAGAACGGATAGTCGGGTGGTATTCAACAGGCC
CGAAAATCCATACCGGTGACCTTGATATCAATGAACTTATCAGATCGTAC
TGTGCAAATCCTGTGCTCGTTATTGTGGATGTGAAGCCCAAAGATCTTGG
ATTGCCCACAGAAGCATATCTTTCTGTGGAAGAATCTCAGAAAGATGGTG
CGGTCACAAAGACTTTTGAACATCTGCCCAGTGAAATTGACGCAACCGAT
GCAGAGGAAGTGGGCGTCGGTCATTTACTGCGCGATATCAAAGACTCCTC
CATCTCAAATCTCACGAGCGATATCACCGCAAAGTCTGCCGCGCTTATGT
CACTCGGTGACCGACTTGCCGAGCTGAAGACTTACCTCGAGGACGTGGCG
GCAATGAATCTCCCAGTCAACAACGAGATCATGTACAGAATGCAAGATGT
TTTCAACTTGCTCCCTAGTCTAAACGTTCCAAAATTGGTGCGAGGTTTCC
ACGTGAAGAACAATGATATGATGCTGGTGCTATATGTTTCTGCCCTGATA
CGATCTATAATCGCGTTGCACGACCTTATTGATAACAAAGTTATGCTCAA
GGCCACTGAGAAGAAAGCTGCTGAGGCTGCTGCCGTGACATCAACAGCGA
ACGGCACCATGGCTGCAAAATAA
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Coding sequence (CDS) from alignment at tig00000900_pilon:447422..448444-

>Ggra2153.t1 ID=Ggra2153.t1|Name=Ggra2153.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=915bp|location=Sequence derived from alignment at tig00000900_pilon:447422..448444- (Gracilaria gracilis GNS1m male)
ATGGCTCCATCAATTCCCACCTCCGTAGCTGTTCATCCCCTAGTCCTACT
AGGGGTAATTGATCATTACAACAGAGTCTGCGAAGGTACTAAGAAACGAG
CGGTCGGTGTGCTACTGGGACATGTAGTTAAAGGGAAAGCCAGCTGCACA
AACTGTTTTGCCGTTCCTTTTGAAGAGGATGAAAAGGATCCATCTGTATG
GTTTCTGGACCATAATTTTCTCGAGAACATGATGGGAATGTTTCGAAAGG
TTAACGCGCGAGAACGGATAGTCGGGTGGTATTCAACAGGCCCGAAAATC
CATACCGGTGACCTTGATATCAATGAACTTATCAGATCGTACTGTGCAAA
TCCTGTGCTCGTTATTGTGGATGTGAAGCCCAAAGATCTTGGATTGCCCA
CAGAAGCATATCTTTCTGTGGAAGAATCTCAGAAAGATGGTGCGGTCACA
AAGACTTTTGAACATCTGCCCAGTGAAATTGACGCAACCGATGCAGAGGA
AGTGGGCGTCGGTCATTTACTGCGCGATATCAAAGACTCCTCCATCTCAA
ATCTCACGAGCGATATCACCGCAAAGTCTGCCGCGCTTATGTCACTCGGT
GACCGACTTGCCGAGCTGAAGACTTACCTCGAGGACGTGGCGGCAATGAA
TCTCCCAGTCAACAACGAGATCATGTACAGAATGCAAGATGTTTTCAACT
TGCTCCCTAGTCTAAACGTTCCAAAATTGGTGCGAGGTTTCCACGTGAAG
AACAATGATATGATGCTGGTGCTATATGTTTCTGCCCTGATACGATCTAT
AATCGCGTTGCACGACCTTATTGATAACAAAGTTATGCTCAAGGCCACTG
AGAAGAAAGCTGCTGAGGCTGCTGCCGTGACATCAACAGCGAACGGCACC
ATGGCTGCAAAATAA
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