Ggra2149.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2149.t1
Unique NameGgra2149.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length472
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:433823..435238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMH047CT
PFAMsEpimerase
Max annot lvl2759|Eukaryota
GOsGO:0000427,GO:0000428,GO:0001101,GO:0001871,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005777,GO:0005840,GO:0005911,GO:0005975,GO:0005996,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006412,GO:0006417,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007154,GO:0007623,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009409,GO:0009414,GO:0009415,GO:0009506,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009628,GO:0009657,GO:0009658,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0009987,GO:0009991,GO:0010035,GO:0010287,GO:0010297,GO:0010319,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0019538,GO:0022613,GO:0030054,GO:0030246,GO:0030247,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031668,GO:0031967,GO:0031975,GO:0032268,GO:0032270,GO:0032544,GO:0032991,GO:0033554,GO:0034248,GO:0034250,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042221,GO:0042254,GO:0042579,GO:0042631,GO:0042742,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045893,GO:0045935,GO:0046483,GO:0048046,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051704,GO:0051707,GO:0051716,GO:0055044,GO:0060255,GO:0061695,GO:0065007,GO:0070887,GO:0071214,GO:0071229,GO:0071462,GO:0071496,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0098542,GO:0104004,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1901701,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990234,GO:1990904,GO:2000112,GO:2001141
Evalue3.28e-124
EggNOG OGs2CMCJ@1|root,2QPZ0@2759|Eukaryota
DescriptionNAD dependent epimerase/dehydratase family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2149Ggra2149Gracilaria gracilis GNS1m malegenetig00000900_pilon 433823..435238 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2149.t1.stop1Ggra2149.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 433823..433825 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2149.t1.CDS1Ggra2149.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 433823..435238 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2149.t1.exon1Ggra2149.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 433823..435238 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2149.t1.start1Ggra2149.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 435236..435238 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2149.t1Ggra2149.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 433823..435238 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2149.t1 ID=Ggra2149.t1|Name=Ggra2149.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=472bp
MAVLIRQESCHKIPRGDCGVAEFSSIPVAIEPQLPRVLSSQISRPYLSAV
GAPVHHRRSDLCLQPLLCYTMAPALAFASPAALTASTGASFSSSFVSRQT
PVLRASARRARVEPPVREQHERRHGFAVVRAMAASMAGKRVLVIGGTRFS
GLYLVHELANRGAHVVILNRGSKQIGDPSLRVPGETEQHFAERNANTASL
IADRTDADALKAALKGQSFDVIFDNNGRRLSDSAPLIDIAKEMGAHFVYM
SSAGVYLKSELMPHIEGDATDPQSRHKGKLDTEEYLRVSGINFTAIRPTY
IYGALNYNPLEQWFFERIDKGMPICIPGHGAHLTGLGHVRDLAAAMAACA
LSPTAYGQVYNIQDRSSVSFDGVARLFAKAMGKPEPEIVHYNPKDYDFGK
KKAFPFRPQHFFCSPSKALRELDWTIEYDLATGIQDAYENDYLPKKASGG
LKNDFETDDIILNAVKGASVV*
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spliced messenger RNA

>Ggra2149.t1 ID=Ggra2149.t1|Name=Ggra2149.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1416bp|location=Sequence derived from alignment at tig00000900_pilon:433823..435238- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGTGCTGATCCGACAAGAGTCTTGTCACAAGATTCCTCGCGGCGA
CTGCGGTGTGGCCGAGTTCTCCTCCATCCCCGTCGCTATTGAGCCCCAGC
TCCCGCGAGTGTTATCGAGCCAGATTAGTAGACCCTATCTATCAGCCGTT
GGCGCACCAGTTCATCACCGTCGTTCTGACTTGTGCCTCCAGCCGTTGTT
GTGCTACACGATGGCACCCGCTCTAGCTTTCGCTTCGCCGGCAGCGCTCA
CCGCGTCCACCGGCGCCTCGTTCTCGTCGTCGTTCGTCTCCCGTCAGACG
CCCGTCTTGCGAGCCAGTGCACGCCGCGCGCGCGTGGAGCCGCCCGTCCG
TGAGCAGCATGAGCGTCGACATGGCTTTGCTGTCGTGCGTGCCATGGCTG
CCTCTATGGCTGGAAAGCGAGTGCTCGTCATTGGCGGCACTCGCTTCTCT
GGTCTGTACCTCGTGCACGAGCTTGCCAATCGTGGAGCGCACGTTGTCAT
TCTCAATCGAGGCTCAAAGCAGATTGGCGACCCCTCGCTCAGAGTGCCTG
GCGAGACGGAGCAGCATTTTGCCGAGCGAAATGCGAACACCGCGTCGCTG
ATTGCCGATAGAACCGATGCCGACGCCCTCAAGGCAGCGTTGAAAGGTCA
GAGCTTTGATGTCATTTTCGATAACAACGGACGCAGGCTTTCAGACTCGG
CGCCTCTTATCGATATTGCGAAGGAGATGGGTGCCCACTTCGTGTACATG
TCATCGGCAGGAGTTTACCTAAAGTCTGAGCTCATGCCCCATATTGAAGG
TGACGCTACTGATCCCCAGTCAAGACATAAGGGAAAGCTTGACACCGAGG
AATATCTACGCGTATCGGGAATTAACTTCACTGCTATCAGACCCACATAT
ATTTACGGTGCTCTCAACTACAATCCTTTGGAGCAGTGGTTCTTTGAGCG
CATTGACAAGGGGATGCCCATCTGCATCCCGGGACATGGAGCCCATCTCA
CTGGTCTCGGTCATGTTCGCGATCTTGCTGCCGCAATGGCTGCATGTGCT
TTGAGTCCCACTGCATATGGACAGGTCTACAACATTCAGGACCGTAGTTC
TGTTTCATTTGATGGTGTGGCTAGACTTTTTGCCAAGGCGATGGGCAAGC
CGGAACCAGAGATTGTACATTACAATCCCAAAGACTACGACTTTGGTAAG
AAGAAGGCCTTTCCATTCCGGCCTCAACACTTTTTCTGTTCCCCTAGCAA
AGCTCTTCGAGAACTAGATTGGACAATTGAGTATGACTTGGCCACTGGCA
TTCAAGATGCTTATGAGAACGACTACCTGCCAAAGAAGGCAAGCGGTGGC
CTGAAGAATGACTTTGAGACTGATGATATCATCCTCAATGCTGTCAAAGG
CGCTTCTGTCGTTTAG
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protein sequence of Ggra2149.t1

>Ggra2149.t1 ID=Ggra2149.t1|Name=Ggra2149.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=472bp
MAVLIRQESCHKIPRGDCGVAEFSSIPVAIEPQLPRVLSSQISRPYLSAV
GAPVHHRRSDLCLQPLLCYTMAPALAFASPAALTASTGASFSSSFVSRQT
PVLRASARRARVEPPVREQHERRHGFAVVRAMAASMAGKRVLVIGGTRFS
GLYLVHELANRGAHVVILNRGSKQIGDPSLRVPGETEQHFAERNANTASL
IADRTDADALKAALKGQSFDVIFDNNGRRLSDSAPLIDIAKEMGAHFVYM
SSAGVYLKSELMPHIEGDATDPQSRHKGKLDTEEYLRVSGINFTAIRPTY
IYGALNYNPLEQWFFERIDKGMPICIPGHGAHLTGLGHVRDLAAAMAACA
LSPTAYGQVYNIQDRSSVSFDGVARLFAKAMGKPEPEIVHYNPKDYDFGK
KKAFPFRPQHFFCSPSKALRELDWTIEYDLATGIQDAYENDYLPKKASGG
LKNDFETDDIILNAVKGASVV*
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mRNA from alignment at tig00000900_pilon:433823..435238-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2149.t1 ID=Ggra2149.t1|Name=Ggra2149.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1416bp|location=Sequence derived from alignment at tig00000900_pilon:433823..435238- (Gracilaria gracilis GNS1m male)
ATGGCTGTGCTGATCCGACAAGAGTCTTGTCACAAGATTCCTCGCGGCGA
CTGCGGTGTGGCCGAGTTCTCCTCCATCCCCGTCGCTATTGAGCCCCAGC
TCCCGCGAGTGTTATCGAGCCAGATTAGTAGACCCTATCTATCAGCCGTT
GGCGCACCAGTTCATCACCGTCGTTCTGACTTGTGCCTCCAGCCGTTGTT
GTGCTACACGATGGCACCCGCTCTAGCTTTCGCTTCGCCGGCAGCGCTCA
CCGCGTCCACCGGCGCCTCGTTCTCGTCGTCGTTCGTCTCCCGTCAGACG
CCCGTCTTGCGAGCCAGTGCACGCCGCGCGCGCGTGGAGCCGCCCGTCCG
TGAGCAGCATGAGCGTCGACATGGCTTTGCTGTCGTGCGTGCCATGGCTG
CCTCTATGGCTGGAAAGCGAGTGCTCGTCATTGGCGGCACTCGCTTCTCT
GGTCTGTACCTCGTGCACGAGCTTGCCAATCGTGGAGCGCACGTTGTCAT
TCTCAATCGAGGCTCAAAGCAGATTGGCGACCCCTCGCTCAGAGTGCCTG
GCGAGACGGAGCAGCATTTTGCCGAGCGAAATGCGAACACCGCGTCGCTG
ATTGCCGATAGAACCGATGCCGACGCCCTCAAGGCAGCGTTGAAAGGTCA
GAGCTTTGATGTCATTTTCGATAACAACGGACGCAGGCTTTCAGACTCGG
CGCCTCTTATCGATATTGCGAAGGAGATGGGTGCCCACTTCGTGTACATG
TCATCGGCAGGAGTTTACCTAAAGTCTGAGCTCATGCCCCATATTGAAGG
TGACGCTACTGATCCCCAGTCAAGACATAAGGGAAAGCTTGACACCGAGG
AATATCTACGCGTATCGGGAATTAACTTCACTGCTATCAGACCCACATAT
ATTTACGGTGCTCTCAACTACAATCCTTTGGAGCAGTGGTTCTTTGAGCG
CATTGACAAGGGGATGCCCATCTGCATCCCGGGACATGGAGCCCATCTCA
CTGGTCTCGGTCATGTTCGCGATCTTGCTGCCGCAATGGCTGCATGTGCT
TTGAGTCCCACTGCATATGGACAGGTCTACAACATTCAGGACCGTAGTTC
TGTTTCATTTGATGGTGTGGCTAGACTTTTTGCCAAGGCGATGGGCAAGC
CGGAACCAGAGATTGTACATTACAATCCCAAAGACTACGACTTTGGTAAG
AAGAAGGCCTTTCCATTCCGGCCTCAACACTTTTTCTGTTCCCCTAGCAA
AGCTCTTCGAGAACTAGATTGGACAATTGAGTATGACTTGGCCACTGGCA
TTCAAGATGCTTATGAGAACGACTACCTGCCAAAGAAGGCAAGCGGTGGC
CTGAAGAATGACTTTGAGACTGATGATATCATCCTCAATGCTGTCAAAGG
CGCTTCTGTCGTTTAG
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Coding sequence (CDS) from alignment at tig00000900_pilon:433823..435238-

>Ggra2149.t1 ID=Ggra2149.t1|Name=Ggra2149.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1416bp|location=Sequence derived from alignment at tig00000900_pilon:433823..435238- (Gracilaria gracilis GNS1m male)
ATGGCTGTGCTGATCCGACAAGAGTCTTGTCACAAGATTCCTCGCGGCGA
CTGCGGTGTGGCCGAGTTCTCCTCCATCCCCGTCGCTATTGAGCCCCAGC
TCCCGCGAGTGTTATCGAGCCAGATTAGTAGACCCTATCTATCAGCCGTT
GGCGCACCAGTTCATCACCGTCGTTCTGACTTGTGCCTCCAGCCGTTGTT
GTGCTACACGATGGCACCCGCTCTAGCTTTCGCTTCGCCGGCAGCGCTCA
CCGCGTCCACCGGCGCCTCGTTCTCGTCGTCGTTCGTCTCCCGTCAGACG
CCCGTCTTGCGAGCCAGTGCACGCCGCGCGCGCGTGGAGCCGCCCGTCCG
TGAGCAGCATGAGCGTCGACATGGCTTTGCTGTCGTGCGTGCCATGGCTG
CCTCTATGGCTGGAAAGCGAGTGCTCGTCATTGGCGGCACTCGCTTCTCT
GGTCTGTACCTCGTGCACGAGCTTGCCAATCGTGGAGCGCACGTTGTCAT
TCTCAATCGAGGCTCAAAGCAGATTGGCGACCCCTCGCTCAGAGTGCCTG
GCGAGACGGAGCAGCATTTTGCCGAGCGAAATGCGAACACCGCGTCGCTG
ATTGCCGATAGAACCGATGCCGACGCCCTCAAGGCAGCGTTGAAAGGTCA
GAGCTTTGATGTCATTTTCGATAACAACGGACGCAGGCTTTCAGACTCGG
CGCCTCTTATCGATATTGCGAAGGAGATGGGTGCCCACTTCGTGTACATG
TCATCGGCAGGAGTTTACCTAAAGTCTGAGCTCATGCCCCATATTGAAGG
TGACGCTACTGATCCCCAGTCAAGACATAAGGGAAAGCTTGACACCGAGG
AATATCTACGCGTATCGGGAATTAACTTCACTGCTATCAGACCCACATAT
ATTTACGGTGCTCTCAACTACAATCCTTTGGAGCAGTGGTTCTTTGAGCG
CATTGACAAGGGGATGCCCATCTGCATCCCGGGACATGGAGCCCATCTCA
CTGGTCTCGGTCATGTTCGCGATCTTGCTGCCGCAATGGCTGCATGTGCT
TTGAGTCCCACTGCATATGGACAGGTCTACAACATTCAGGACCGTAGTTC
TGTTTCATTTGATGGTGTGGCTAGACTTTTTGCCAAGGCGATGGGCAAGC
CGGAACCAGAGATTGTACATTACAATCCCAAAGACTACGACTTTGGTAAG
AAGAAGGCCTTTCCATTCCGGCCTCAACACTTTTTCTGTTCCCCTAGCAA
AGCTCTTCGAGAACTAGATTGGACAATTGAGTATGACTTGGCCACTGGCA
TTCAAGATGCTTATGAGAACGACTACCTGCCAAAGAAGGCAAGCGGTGGC
CTGAAGAATGACTTTGAGACTGATGATATCATCCTCAATGCTGTCAAAGG
CGCTTCTGTCGTTTAG
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