Ggra2142.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2142.t1
Unique NameGgra2142.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length355
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:414179..415243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002948783.1
PFAMsRRM_1
Max annot lvl3041|Chlorophyta
KEGG koko:K14838
Evalue1.03e-41
EggNOG OGsKOG4208@1|root,KOG4208@2759|Eukaryota,37RHZ@33090|Viridiplantae,34M16@3041|Chlorophyta
DescriptionRNA recognition motif
COG categoryA
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2142Ggra2142Gracilaria gracilis GNS1m malegenetig00000900_pilon 414179..415243 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2142.t1.stop1Ggra2142.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 414179..414181 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2142.t1.CDS1Ggra2142.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 414179..415243 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2142.t1.exon1Ggra2142.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 414179..415243 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2142.t1.start1Ggra2142.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 415241..415243 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2142.t1Ggra2142.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 414179..415243 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2142.t1 ID=Ggra2142.t1|Name=Ggra2142.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=355bp
MSNTPNKTYRATGKKSPRTKSNTSVKSPSSQNTATKNNSASKRKTHGVSQ
RNTEAPSPQVVINKDITESKLKLLEQSPLRRLIPEKDRKAAATELRANRK
RSRNSVQNNNSTGGTNDANHSQEDRPEAAPTNHERQTADIKEPRVSETAE
QQAETKQKTSARQNLDDIKLGVAKKDEARKMRWKVRKLRKDGKLADTDRD
LNPGVLYLGHIPHGFYEKEMKSYFSQFGEVLRLRLSRSAKTARSRGYAFI
EFAHKEVAEIAADAMDGYLMHKQKLVAHFVPPEKVHADMFKGANRTFRQI
PWSRIERRKMLKRAKDPVQLAARSKRILKSARKKQKILARQGLAHSFLEL
PRGP*
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spliced messenger RNA

>Ggra2142.t1 ID=Ggra2142.t1|Name=Ggra2142.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00000900_pilon:414179..415243- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTAACACCCCAAACAAGACCTACCGTGCTACAGGCAAGAAGTCCCC
ACGCACCAAGTCGAATACCTCTGTCAAATCTCCGTCCTCCCAGAACACCG
CCACGAAGAACAACAGCGCCAGCAAAAGGAAAACTCATGGGGTCAGCCAG
CGAAACACAGAAGCGCCTAGTCCGCAGGTCGTCATTAACAAGGATATCAC
AGAATCTAAGCTCAAACTTCTGGAACAGTCGCCGCTTCGGAGACTGATTC
CAGAGAAAGATCGGAAAGCGGCCGCAACTGAATTGCGAGCGAATCGCAAG
AGAAGCCGCAACTCCGTGCAAAATAATAATTCGACAGGCGGCACAAATGA
TGCAAACCATTCCCAAGAGGACAGACCCGAAGCAGCTCCTACAAATCATG
AGCGACAAACCGCTGATATTAAGGAACCCCGCGTTTCTGAAACAGCTGAA
CAACAAGCTGAAACAAAACAGAAGACAAGCGCGCGTCAAAATCTAGATGA
CATCAAATTGGGGGTTGCGAAAAAGGACGAGGCACGCAAGATGAGGTGGA
AGGTTCGTAAGCTTCGAAAGGATGGAAAACTGGCAGATACTGACAGAGAC
TTAAATCCCGGAGTGTTATACCTGGGTCATATACCGCATGGCTTTTACGA
GAAGGAAATGAAAAGTTACTTTTCACAGTTTGGTGAAGTGTTACGCCTCC
GTTTGAGTAGATCCGCGAAGACCGCACGTTCGAGAGGCTATGCGTTTATA
GAATTTGCCCATAAGGAAGTGGCTGAGATTGCTGCCGACGCCATGGACGG
ATATCTTATGCACAAACAGAAGCTGGTCGCTCACTTTGTCCCACCGGAAA
AGGTTCATGCCGATATGTTTAAGGGCGCGAATCGCACATTCAGACAGATC
CCATGGTCCCGAATCGAAAGAAGGAAGATGCTGAAGCGCGCAAAGGATCC
TGTACAACTGGCTGCTCGCTCAAAGAGGATTTTGAAGTCTGCCAGGAAGA
AGCAGAAGATTCTTGCGAGACAGGGATTGGCACACTCGTTCCTGGAACTG
CCACGGGGGCCGTAA
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protein sequence of Ggra2142.t1

>Ggra2142.t1 ID=Ggra2142.t1|Name=Ggra2142.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=355bp
MSNTPNKTYRATGKKSPRTKSNTSVKSPSSQNTATKNNSASKRKTHGVSQ
RNTEAPSPQVVINKDITESKLKLLEQSPLRRLIPEKDRKAAATELRANRK
RSRNSVQNNNSTGGTNDANHSQEDRPEAAPTNHERQTADIKEPRVSETAE
QQAETKQKTSARQNLDDIKLGVAKKDEARKMRWKVRKLRKDGKLADTDRD
LNPGVLYLGHIPHGFYEKEMKSYFSQFGEVLRLRLSRSAKTARSRGYAFI
EFAHKEVAEIAADAMDGYLMHKQKLVAHFVPPEKVHADMFKGANRTFRQI
PWSRIERRKMLKRAKDPVQLAARSKRILKSARKKQKILARQGLAHSFLEL
PRGP*
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mRNA from alignment at tig00000900_pilon:414179..415243-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2142.t1 ID=Ggra2142.t1|Name=Ggra2142.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00000900_pilon:414179..415243- (Gracilaria gracilis GNS1m male)
ATGTCTAACACCCCAAACAAGACCTACCGTGCTACAGGCAAGAAGTCCCC
ACGCACCAAGTCGAATACCTCTGTCAAATCTCCGTCCTCCCAGAACACCG
CCACGAAGAACAACAGCGCCAGCAAAAGGAAAACTCATGGGGTCAGCCAG
CGAAACACAGAAGCGCCTAGTCCGCAGGTCGTCATTAACAAGGATATCAC
AGAATCTAAGCTCAAACTTCTGGAACAGTCGCCGCTTCGGAGACTGATTC
CAGAGAAAGATCGGAAAGCGGCCGCAACTGAATTGCGAGCGAATCGCAAG
AGAAGCCGCAACTCCGTGCAAAATAATAATTCGACAGGCGGCACAAATGA
TGCAAACCATTCCCAAGAGGACAGACCCGAAGCAGCTCCTACAAATCATG
AGCGACAAACCGCTGATATTAAGGAACCCCGCGTTTCTGAAACAGCTGAA
CAACAAGCTGAAACAAAACAGAAGACAAGCGCGCGTCAAAATCTAGATGA
CATCAAATTGGGGGTTGCGAAAAAGGACGAGGCACGCAAGATGAGGTGGA
AGGTTCGTAAGCTTCGAAAGGATGGAAAACTGGCAGATACTGACAGAGAC
TTAAATCCCGGAGTGTTATACCTGGGTCATATACCGCATGGCTTTTACGA
GAAGGAAATGAAAAGTTACTTTTCACAGTTTGGTGAAGTGTTACGCCTCC
GTTTGAGTAGATCCGCGAAGACCGCACGTTCGAGAGGCTATGCGTTTATA
GAATTTGCCCATAAGGAAGTGGCTGAGATTGCTGCCGACGCCATGGACGG
ATATCTTATGCACAAACAGAAGCTGGTCGCTCACTTTGTCCCACCGGAAA
AGGTTCATGCCGATATGTTTAAGGGCGCGAATCGCACATTCAGACAGATC
CCATGGTCCCGAATCGAAAGAAGGAAGATGCTGAAGCGCGCAAAGGATCC
TGTACAACTGGCTGCTCGCTCAAAGAGGATTTTGAAGTCTGCCAGGAAGA
AGCAGAAGATTCTTGCGAGACAGGGATTGGCACACTCGTTCCTGGAACTG
CCACGGGGGCCGTAA
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Coding sequence (CDS) from alignment at tig00000900_pilon:414179..415243-

>Ggra2142.t1 ID=Ggra2142.t1|Name=Ggra2142.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1065bp|location=Sequence derived from alignment at tig00000900_pilon:414179..415243- (Gracilaria gracilis GNS1m male)
ATGTCTAACACCCCAAACAAGACCTACCGTGCTACAGGCAAGAAGTCCCC
ACGCACCAAGTCGAATACCTCTGTCAAATCTCCGTCCTCCCAGAACACCG
CCACGAAGAACAACAGCGCCAGCAAAAGGAAAACTCATGGGGTCAGCCAG
CGAAACACAGAAGCGCCTAGTCCGCAGGTCGTCATTAACAAGGATATCAC
AGAATCTAAGCTCAAACTTCTGGAACAGTCGCCGCTTCGGAGACTGATTC
CAGAGAAAGATCGGAAAGCGGCCGCAACTGAATTGCGAGCGAATCGCAAG
AGAAGCCGCAACTCCGTGCAAAATAATAATTCGACAGGCGGCACAAATGA
TGCAAACCATTCCCAAGAGGACAGACCCGAAGCAGCTCCTACAAATCATG
AGCGACAAACCGCTGATATTAAGGAACCCCGCGTTTCTGAAACAGCTGAA
CAACAAGCTGAAACAAAACAGAAGACAAGCGCGCGTCAAAATCTAGATGA
CATCAAATTGGGGGTTGCGAAAAAGGACGAGGCACGCAAGATGAGGTGGA
AGGTTCGTAAGCTTCGAAAGGATGGAAAACTGGCAGATACTGACAGAGAC
TTAAATCCCGGAGTGTTATACCTGGGTCATATACCGCATGGCTTTTACGA
GAAGGAAATGAAAAGTTACTTTTCACAGTTTGGTGAAGTGTTACGCCTCC
GTTTGAGTAGATCCGCGAAGACCGCACGTTCGAGAGGCTATGCGTTTATA
GAATTTGCCCATAAGGAAGTGGCTGAGATTGCTGCCGACGCCATGGACGG
ATATCTTATGCACAAACAGAAGCTGGTCGCTCACTTTGTCCCACCGGAAA
AGGTTCATGCCGATATGTTTAAGGGCGCGAATCGCACATTCAGACAGATC
CCATGGTCCCGAATCGAAAGAAGGAAGATGCTGAAGCGCGCAAAGGATCC
TGTACAACTGGCTGCTCGCTCAAAGAGGATTTTGAAGTCTGCCAGGAAGA
AGCAGAAGATTCTTGCGAGACAGGGATTGGCACACTCGTTCCTGGAACTG
CCACGGGGGCCGTAA
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