Ggra2138.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2138.t1
Unique Name	Ggra2138.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	832

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:402662..405157 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	42099.EPrPV00000018430
PFAMs	DEAD_2,Helicase_C_2
Max annot lvl	121069\|Pythiales
Evalue	2.49e-130
EggNOG OGs	COG1199@1\|root,KOG1133@2759\|Eukaryota,1MEXJ@121069\|Pythiales
Description	ATP-dependent RNA helicase. Source PGD
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2138	Ggra2138	Gracilaria gracilis GNS1m male	gene	tig00000900_pilon 402662..405157 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2138.t1.stop1	Ggra2138.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000900_pilon 402662..402664 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2138.t1.CDS1	Ggra2138.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 402662..405157 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2138.t1.exon1	Ggra2138.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 402662..405157 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2138.t1.start1	Ggra2138.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000900_pilon 405155..405157 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2138.t1	Ggra2138.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000900_pilon 402662..405157 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000900_pilon:402662..405157-
coding sequence from alignment at tig00000900_pilon:402662..405157-

mRNA sequence

>Ggra2138.t1 ID=Ggra2138.t1|Name=Ggra2138.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=832bp
MSTTKPFEDFGFPGTPYDVQKQLMTSLYNTIDTGGIGLFESPTGTGKTLS
IICACLSWLQYNRFNSGEQNSSKDEEPDWVNEQTNDRHARAQTEELDRRR
QAFVRRLSNSMREPDTLSKRRRKPFKDDSFSDSEDETEIRWWQPQRPSTP
KIIFASRTHSQLTQFIEEIRKTKFGDDNTKFDVSNGQLPLSVVLFGSRKQ
FCIHDQVRALSSAAAISERCRELTENAEQPTVAKRKRTKNHCPYKDQKAE
TILRDKGMTQLHTIEELANAGKEIGACPYFATRHALETGEVDVIAVPYSA
VLHQQTRKSLGITVDENTVVIFDEAHNIVNTVHELHASVLSRPFLARTTA
ALKSYIEKYRLRFSPSNLFKLRQLLALSEGLLSLLGRRNERYKKGRVVHP
SVILLEAGVDNINLYDLVRYAEESRLCKKLRGFVDAGHLNPGHKDMSDES
RGLFEEKHQKQQSVAKQGLMAFESFLRCLSDCSEHARVAIYPYEIQKSFT
KADEGFLPLDMTARLKYFLVEPSAVFASSVKKAKAVLMLGGTLSPRSAIK
KTLLKHLNRGEVVEFECNHVVPAENVITRICGAGPSNIALQFTYATRQNQ
AILDELASAIESSVRLVEGGVVVFFSSYELLKRATERWRTTGSFRSISLL
KPIVLERRGTNEAFSQFQTLIKRNNKKGALLAAVMGGKLSEGINFSDDLG
RMVIVVGMPFANAMQLETSEVLAKMSSADERSDYLENECLTIVNQSIGRA
VRHRNDFASIVLMDQRFARPSSIQKLPSFVKRDLRIASSFGEFENDVKKF
FAAERNITPQQIYLKNPIGTEGTDHSLCIRS*

spliced messenger RNA

>Ggra2138.t1 ID=Ggra2138.t1|Name=Ggra2138.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2496bp|location=Sequence derived from alignment at tig00000900_pilon:402662..405157- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACGACGAAGCCATTTGAAGATTTCGGCTTCCCCGGTACCCCATA
CGATGTTCAGAAACAATTAATGACTTCCCTCTACAACACCATCGATACCG
GGGGGATAGGTCTATTTGAGTCACCAACTGGCACTGGAAAAACACTGTCT
ATAATATGTGCTTGTCTTTCTTGGCTTCAATACAATCGATTCAATTCCGG
CGAACAAAACAGTTCAAAAGATGAAGAACCAGACTGGGTCAACGAACAAA
CAAACGATCGACATGCTCGTGCGCAAACTGAAGAGCTTGACAGAAGGCGC
CAAGCATTCGTACGCAGGCTATCGAACTCAATGAGAGAGCCAGATACCCT
CTCGAAACGTAGACGAAAACCGTTTAAAGATGACAGCTTCTCTGATTCTG
AAGACGAAACTGAAATCAGATGGTGGCAGCCCCAGCGTCCGAGTACCCCA
AAGATCATCTTCGCCAGTAGGACCCATTCGCAACTTACGCAGTTTATCGA
AGAAATACGGAAGACCAAGTTTGGCGACGATAATACAAAGTTTGATGTTT
CTAATGGACAGTTACCTCTCAGTGTTGTCTTATTCGGTTCTCGAAAGCAA
TTCTGTATCCACGACCAGGTTCGTGCCCTCAGCAGCGCCGCAGCAATCTC
GGAGCGATGCCGAGAACTCACTGAGAATGCTGAACAGCCCACAGTAGCTA
AAAGGAAAAGAACGAAGAATCATTGCCCTTACAAGGACCAAAAGGCAGAA
ACTATCCTACGCGACAAGGGAATGACGCAATTGCACACCATAGAAGAACT
GGCCAATGCTGGAAAAGAAATTGGAGCATGTCCATACTTTGCTACTAGGC
ATGCGCTAGAGACAGGGGAAGTTGACGTAATAGCAGTGCCATACTCCGCC
GTTTTGCATCAGCAAACAAGGAAGTCTTTGGGAATCACCGTTGACGAGAA
CACGGTTGTAATATTCGATGAGGCTCACAATATCGTCAATACCGTGCATG
AATTGCATGCCAGCGTGCTTAGCAGGCCGTTCCTTGCTCGAACTACAGCA
GCACTGAAGTCCTACATAGAAAAGTATCGACTTCGTTTCTCACCAAGCAA
CCTGTTCAAACTTCGGCAACTACTTGCTCTATCCGAGGGACTCCTTTCGT
TGCTCGGAAGGCGCAATGAAAGGTACAAGAAGGGAAGAGTCGTCCATCCC
TCTGTAATCCTTCTAGAAGCTGGGGTTGATAATATTAATTTGTATGATTT
GGTAAGATACGCAGAAGAATCTCGTCTTTGTAAGAAACTAAGAGGATTTG
TTGATGCAGGTCATCTAAACCCAGGTCATAAGGATATGTCTGACGAGTCG
AGGGGACTCTTTGAAGAAAAACACCAGAAGCAGCAAAGCGTGGCGAAGCA
AGGCTTGATGGCGTTTGAGAGCTTCCTTCGCTGCTTATCCGACTGCTCTG
AGCATGCCCGCGTAGCAATATATCCTTATGAGATTCAGAAGAGTTTCACC
AAAGCTGACGAAGGCTTTCTACCCCTGGACATGACTGCTCGCCTTAAGTA
CTTCCTCGTTGAACCTTCTGCCGTTTTTGCGTCAAGCGTGAAGAAGGCGA
AAGCAGTGCTTATGTTAGGAGGAACTCTGAGTCCACGGTCTGCAATCAAG
AAGACACTACTGAAGCATTTAAATCGTGGTGAAGTTGTCGAGTTTGAATG
CAATCACGTCGTTCCAGCAGAGAATGTCATAACACGGATTTGTGGAGCAG
GACCATCGAACATTGCACTTCAGTTCACGTATGCAACAAGGCAAAACCAA
GCAATCCTCGATGAGTTGGCGTCGGCGATTGAATCAAGTGTTCGCCTTGT
GGAGGGAGGCGTTGTGGTTTTCTTTTCTAGTTACGAATTGCTCAAGCGAG
CTACCGAAAGATGGCGAACCACAGGCTCCTTTCGGAGCATTTCCTTGCTG
AAGCCAATAGTCCTCGAAAGAAGAGGTACAAATGAAGCCTTTTCTCAATT
CCAAACTTTGATTAAGCGCAACAACAAGAAAGGTGCTTTGCTAGCGGCAG
TAATGGGTGGGAAACTTTCCGAAGGGATTAACTTCTCAGATGACTTGGGG
CGAATGGTAATTGTGGTTGGTATGCCATTTGCCAATGCGATGCAACTAGA
AACAAGCGAGGTTCTTGCAAAGATGAGTTCTGCAGACGAGAGATCTGACT
ATTTGGAAAATGAGTGTTTGACAATCGTGAATCAATCAATCGGAAGGGCT
GTCAGACATCGCAATGACTTCGCCAGCATTGTCCTCATGGATCAGCGATT
TGCCAGACCCAGCTCAATACAGAAACTTCCTAGTTTTGTCAAACGTGATC
TTCGCATTGCTTCATCTTTCGGTGAATTCGAGAATGATGTTAAGAAATTC
TTCGCCGCAGAACGGAATATCACCCCACAACAAATATATCTTAAGAATCC
GATTGGTACTGAAGGTACCGACCACTCCTTATGTATAAGGTCTTGA

protein sequence of Ggra2138.t1

>Ggra2138.t1 ID=Ggra2138.t1|Name=Ggra2138.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=832bp
MSTTKPFEDFGFPGTPYDVQKQLMTSLYNTIDTGGIGLFESPTGTGKTLS
IICACLSWLQYNRFNSGEQNSSKDEEPDWVNEQTNDRHARAQTEELDRRR
QAFVRRLSNSMREPDTLSKRRRKPFKDDSFSDSEDETEIRWWQPQRPSTP
KIIFASRTHSQLTQFIEEIRKTKFGDDNTKFDVSNGQLPLSVVLFGSRKQ
FCIHDQVRALSSAAAISERCRELTENAEQPTVAKRKRTKNHCPYKDQKAE
TILRDKGMTQLHTIEELANAGKEIGACPYFATRHALETGEVDVIAVPYSA
VLHQQTRKSLGITVDENTVVIFDEAHNIVNTVHELHASVLSRPFLARTTA
ALKSYIEKYRLRFSPSNLFKLRQLLALSEGLLSLLGRRNERYKKGRVVHP
SVILLEAGVDNINLYDLVRYAEESRLCKKLRGFVDAGHLNPGHKDMSDES
RGLFEEKHQKQQSVAKQGLMAFESFLRCLSDCSEHARVAIYPYEIQKSFT
KADEGFLPLDMTARLKYFLVEPSAVFASSVKKAKAVLMLGGTLSPRSAIK
KTLLKHLNRGEVVEFECNHVVPAENVITRICGAGPSNIALQFTYATRQNQ
AILDELASAIESSVRLVEGGVVVFFSSYELLKRATERWRTTGSFRSISLL
KPIVLERRGTNEAFSQFQTLIKRNNKKGALLAAVMGGKLSEGINFSDDLG
RMVIVVGMPFANAMQLETSEVLAKMSSADERSDYLENECLTIVNQSIGRA
VRHRNDFASIVLMDQRFARPSSIQKLPSFVKRDLRIASSFGEFENDVKKF
FAAERNITPQQIYLKNPIGTEGTDHSLCIRS*

mRNA from alignment at tig00000900_pilon:402662..405157-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2138.t1 ID=Ggra2138.t1|Name=Ggra2138.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2496bp|location=Sequence derived from alignment at tig00000900_pilon:402662..405157- (Gracilaria gracilis GNS1m male)
ATGAGCACGACGAAGCCATTTGAAGATTTCGGCTTCCCCGGTACCCCATA
CGATGTTCAGAAACAATTAATGACTTCCCTCTACAACACCATCGATACCG
GGGGGATAGGTCTATTTGAGTCACCAACTGGCACTGGAAAAACACTGTCT
ATAATATGTGCTTGTCTTTCTTGGCTTCAATACAATCGATTCAATTCCGG
CGAACAAAACAGTTCAAAAGATGAAGAACCAGACTGGGTCAACGAACAAA
CAAACGATCGACATGCTCGTGCGCAAACTGAAGAGCTTGACAGAAGGCGC
CAAGCATTCGTACGCAGGCTATCGAACTCAATGAGAGAGCCAGATACCCT
CTCGAAACGTAGACGAAAACCGTTTAAAGATGACAGCTTCTCTGATTCTG
AAGACGAAACTGAAATCAGATGGTGGCAGCCCCAGCGTCCGAGTACCCCA
AAGATCATCTTCGCCAGTAGGACCCATTCGCAACTTACGCAGTTTATCGA
AGAAATACGGAAGACCAAGTTTGGCGACGATAATACAAAGTTTGATGTTT
CTAATGGACAGTTACCTCTCAGTGTTGTCTTATTCGGTTCTCGAAAGCAA
TTCTGTATCCACGACCAGGTTCGTGCCCTCAGCAGCGCCGCAGCAATCTC
GGAGCGATGCCGAGAACTCACTGAGAATGCTGAACAGCCCACAGTAGCTA
AAAGGAAAAGAACGAAGAATCATTGCCCTTACAAGGACCAAAAGGCAGAA
ACTATCCTACGCGACAAGGGAATGACGCAATTGCACACCATAGAAGAACT
GGCCAATGCTGGAAAAGAAATTGGAGCATGTCCATACTTTGCTACTAGGC
ATGCGCTAGAGACAGGGGAAGTTGACGTAATAGCAGTGCCATACTCCGCC
GTTTTGCATCAGCAAACAAGGAAGTCTTTGGGAATCACCGTTGACGAGAA
CACGGTTGTAATATTCGATGAGGCTCACAATATCGTCAATACCGTGCATG
AATTGCATGCCAGCGTGCTTAGCAGGCCGTTCCTTGCTCGAACTACAGCA
GCACTGAAGTCCTACATAGAAAAGTATCGACTTCGTTTCTCACCAAGCAA
CCTGTTCAAACTTCGGCAACTACTTGCTCTATCCGAGGGACTCCTTTCGT
TGCTCGGAAGGCGCAATGAAAGGTACAAGAAGGGAAGAGTCGTCCATCCC
TCTGTAATCCTTCTAGAAGCTGGGGTTGATAATATTAATTTGTATGATTT
GGTAAGATACGCAGAAGAATCTCGTCTTTGTAAGAAACTAAGAGGATTTG
TTGATGCAGGTCATCTAAACCCAGGTCATAAGGATATGTCTGACGAGTCG
AGGGGACTCTTTGAAGAAAAACACCAGAAGCAGCAAAGCGTGGCGAAGCA
AGGCTTGATGGCGTTTGAGAGCTTCCTTCGCTGCTTATCCGACTGCTCTG
AGCATGCCCGCGTAGCAATATATCCTTATGAGATTCAGAAGAGTTTCACC
AAAGCTGACGAAGGCTTTCTACCCCTGGACATGACTGCTCGCCTTAAGTA
CTTCCTCGTTGAACCTTCTGCCGTTTTTGCGTCAAGCGTGAAGAAGGCGA
AAGCAGTGCTTATGTTAGGAGGAACTCTGAGTCCACGGTCTGCAATCAAG
AAGACACTACTGAAGCATTTAAATCGTGGTGAAGTTGTCGAGTTTGAATG
CAATCACGTCGTTCCAGCAGAGAATGTCATAACACGGATTTGTGGAGCAG
GACCATCGAACATTGCACTTCAGTTCACGTATGCAACAAGGCAAAACCAA
GCAATCCTCGATGAGTTGGCGTCGGCGATTGAATCAAGTGTTCGCCTTGT
GGAGGGAGGCGTTGTGGTTTTCTTTTCTAGTTACGAATTGCTCAAGCGAG
CTACCGAAAGATGGCGAACCACAGGCTCCTTTCGGAGCATTTCCTTGCTG
AAGCCAATAGTCCTCGAAAGAAGAGGTACAAATGAAGCCTTTTCTCAATT
CCAAACTTTGATTAAGCGCAACAACAAGAAAGGTGCTTTGCTAGCGGCAG
TAATGGGTGGGAAACTTTCCGAAGGGATTAACTTCTCAGATGACTTGGGG
CGAATGGTAATTGTGGTTGGTATGCCATTTGCCAATGCGATGCAACTAGA
AACAAGCGAGGTTCTTGCAAAGATGAGTTCTGCAGACGAGAGATCTGACT
ATTTGGAAAATGAGTGTTTGACAATCGTGAATCAATCAATCGGAAGGGCT
GTCAGACATCGCAATGACTTCGCCAGCATTGTCCTCATGGATCAGCGATT
TGCCAGACCCAGCTCAATACAGAAACTTCCTAGTTTTGTCAAACGTGATC
TTCGCATTGCTTCATCTTTCGGTGAATTCGAGAATGATGTTAAGAAATTC
TTCGCCGCAGAACGGAATATCACCCCACAACAAATATATCTTAAGAATCC
GATTGGTACTGAAGGTACCGACCACTCCTTATGTATAAGGTCTTGA

Coding sequence (CDS) from alignment at tig00000900_pilon:402662..405157-

>Ggra2138.t1 ID=Ggra2138.t1|Name=Ggra2138.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2496bp|location=Sequence derived from alignment at tig00000900_pilon:402662..405157- (Gracilaria gracilis GNS1m male)
ATGAGCACGACGAAGCCATTTGAAGATTTCGGCTTCCCCGGTACCCCATA
CGATGTTCAGAAACAATTAATGACTTCCCTCTACAACACCATCGATACCG
GGGGGATAGGTCTATTTGAGTCACCAACTGGCACTGGAAAAACACTGTCT
ATAATATGTGCTTGTCTTTCTTGGCTTCAATACAATCGATTCAATTCCGG
CGAACAAAACAGTTCAAAAGATGAAGAACCAGACTGGGTCAACGAACAAA
CAAACGATCGACATGCTCGTGCGCAAACTGAAGAGCTTGACAGAAGGCGC
CAAGCATTCGTACGCAGGCTATCGAACTCAATGAGAGAGCCAGATACCCT
CTCGAAACGTAGACGAAAACCGTTTAAAGATGACAGCTTCTCTGATTCTG
AAGACGAAACTGAAATCAGATGGTGGCAGCCCCAGCGTCCGAGTACCCCA
AAGATCATCTTCGCCAGTAGGACCCATTCGCAACTTACGCAGTTTATCGA
AGAAATACGGAAGACCAAGTTTGGCGACGATAATACAAAGTTTGATGTTT
CTAATGGACAGTTACCTCTCAGTGTTGTCTTATTCGGTTCTCGAAAGCAA
TTCTGTATCCACGACCAGGTTCGTGCCCTCAGCAGCGCCGCAGCAATCTC
GGAGCGATGCCGAGAACTCACTGAGAATGCTGAACAGCCCACAGTAGCTA
AAAGGAAAAGAACGAAGAATCATTGCCCTTACAAGGACCAAAAGGCAGAA
ACTATCCTACGCGACAAGGGAATGACGCAATTGCACACCATAGAAGAACT
GGCCAATGCTGGAAAAGAAATTGGAGCATGTCCATACTTTGCTACTAGGC
ATGCGCTAGAGACAGGGGAAGTTGACGTAATAGCAGTGCCATACTCCGCC
GTTTTGCATCAGCAAACAAGGAAGTCTTTGGGAATCACCGTTGACGAGAA
CACGGTTGTAATATTCGATGAGGCTCACAATATCGTCAATACCGTGCATG
AATTGCATGCCAGCGTGCTTAGCAGGCCGTTCCTTGCTCGAACTACAGCA
GCACTGAAGTCCTACATAGAAAAGTATCGACTTCGTTTCTCACCAAGCAA
CCTGTTCAAACTTCGGCAACTACTTGCTCTATCCGAGGGACTCCTTTCGT
TGCTCGGAAGGCGCAATGAAAGGTACAAGAAGGGAAGAGTCGTCCATCCC
TCTGTAATCCTTCTAGAAGCTGGGGTTGATAATATTAATTTGTATGATTT
GGTAAGATACGCAGAAGAATCTCGTCTTTGTAAGAAACTAAGAGGATTTG
TTGATGCAGGTCATCTAAACCCAGGTCATAAGGATATGTCTGACGAGTCG
AGGGGACTCTTTGAAGAAAAACACCAGAAGCAGCAAAGCGTGGCGAAGCA
AGGCTTGATGGCGTTTGAGAGCTTCCTTCGCTGCTTATCCGACTGCTCTG
AGCATGCCCGCGTAGCAATATATCCTTATGAGATTCAGAAGAGTTTCACC
AAAGCTGACGAAGGCTTTCTACCCCTGGACATGACTGCTCGCCTTAAGTA
CTTCCTCGTTGAACCTTCTGCCGTTTTTGCGTCAAGCGTGAAGAAGGCGA
AAGCAGTGCTTATGTTAGGAGGAACTCTGAGTCCACGGTCTGCAATCAAG
AAGACACTACTGAAGCATTTAAATCGTGGTGAAGTTGTCGAGTTTGAATG
CAATCACGTCGTTCCAGCAGAGAATGTCATAACACGGATTTGTGGAGCAG
GACCATCGAACATTGCACTTCAGTTCACGTATGCAACAAGGCAAAACCAA
GCAATCCTCGATGAGTTGGCGTCGGCGATTGAATCAAGTGTTCGCCTTGT
GGAGGGAGGCGTTGTGGTTTTCTTTTCTAGTTACGAATTGCTCAAGCGAG
CTACCGAAAGATGGCGAACCACAGGCTCCTTTCGGAGCATTTCCTTGCTG
AAGCCAATAGTCCTCGAAAGAAGAGGTACAAATGAAGCCTTTTCTCAATT
CCAAACTTTGATTAAGCGCAACAACAAGAAAGGTGCTTTGCTAGCGGCAG
TAATGGGTGGGAAACTTTCCGAAGGGATTAACTTCTCAGATGACTTGGGG
CGAATGGTAATTGTGGTTGGTATGCCATTTGCCAATGCGATGCAACTAGA
AACAAGCGAGGTTCTTGCAAAGATGAGTTCTGCAGACGAGAGATCTGACT
ATTTGGAAAATGAGTGTTTGACAATCGTGAATCAATCAATCGGAAGGGCT
GTCAGACATCGCAATGACTTCGCCAGCATTGTCCTCATGGATCAGCGATT
TGCCAGACCCAGCTCAATACAGAAACTTCCTAGTTTTGTCAAACGTGATC
TTCGCATTGCTTCATCTTTCGGTGAATTCGAGAATGATGTTAAGAAATTC
TTCGCCGCAGAACGGAATATCACCCCACAACAAATATATCTTAAGAATCC
GATTGGTACTGAAGGTACCGACCACTCCTTATGTATAAGGTCTTGA