Ggra2135.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2135.t1
Unique NameGgra2135.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length451
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:393640..394992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709346.1
PFAMsPBD,PH,Pkinase
Max annot lvl2759|Eukaryota
KEGG koko:K04409,ko:K08286
KEGG Pathwayko04010,ko04011,ko04012,ko04014,ko04024,ko04062,ko04360,ko04392,ko04510,ko04650,ko04660,ko04666,ko04810,ko05120,ko05205,ko05211,map04010,map04011,map04012,map04014,map04024,map04062,map04360,map04392,map04510,map04650,map04660,map04666,map04810,map05120,map05205,map05211
GOsGO:0000278,GO:0000281,GO:0000910,GO:0001891,GO:0001932,GO:0001934,GO:0003674,GO:0003779,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006909,GO:0006928,GO:0006935,GO:0006950,GO:0006996,GO:0007010,GO:0007049,GO:0007154,GO:0007163,GO:0007165,GO:0007264,GO:0007265,GO:0007266,GO:0007346,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009267,GO:0009605,GO:0009893,GO:0009966,GO:0009987,GO:0009991,GO:0010562,GO:0010564,GO:0010604,GO:0010646,GO:0016020,GO:0016043,GO:0016192,GO:0016301,GO:0016310,GO:0016477,GO:0016740,GO:0016772,GO:0016773,GO:0016905,GO:0017016,GO:0017022,GO:0017048,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0022402,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0030010,GO:0030029,GO:0030036,GO:0030100,GO:0030587,GO:0031033,GO:0031034,GO:0031036,GO:0031038,GO:0031098,GO:0031152,GO:0031156,GO:0031252,GO:0031254,GO:0031267,GO:0031272,GO:0031273,GO:0031323,GO:0031325,GO:0031344,GO:0031345,GO:0031399,GO:0031401,GO:0031667,GO:0031668,GO:0031669,GO:0032147,GO:0032153,GO:0032154,GO:0032155,GO:0032268,GO:0032270,GO:0032465,GO:0032467,GO:0032502,GO:0032781,GO:0032879,GO:0033036,GO:0033554,GO:0033674,GO:0034613,GO:0034622,GO:0035556,GO:0036211,GO:0040011,GO:0042221,GO:0042325,GO:0042327,GO:0042330,GO:0042594,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043327,GO:0043408,GO:0043412,GO:0043462,GO:0043549,GO:0043900,GO:0043933,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045159,GO:0045787,GO:0045807,GO:0045859,GO:0045860,GO:0045937,GO:0046777,GO:0048365,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048856,GO:0048870,GO:0050764,GO:0050766,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051015,GO:0051020,GO:0051049,GO:0051050,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051301,GO:0051302,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051641,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0051781,GO:0060255,GO:0060491,GO:0060627,GO:0061640,GO:0065003,GO:0065007,GO:0065009,GO:0070727,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090068,GO:0090702,GO:0097204,GO:0098590,GO:0098630,GO:0098657,GO:0098743,GO:0099120,GO:0099568,GO:0120032,GO:0120033,GO:0120035,GO:0140096,GO:1901564,GO:1902463,GO:1902531,GO:1903047
Evalue1.33e-70
EggNOG OGsKOG0578@1|root,KOG0578@2759|Eukaryota
EC2.7.11.1
DescriptionRac GTPase binding
COG categoryF
BRITEko00000,ko00001,ko01000,ko01001,ko03036,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2135Ggra2135Gracilaria gracilis GNS1m malegenetig00000900_pilon 393640..394992 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2135.t1.start1Ggra2135.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 393640..393642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2135.t1.CDS1Ggra2135.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 393640..394992 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2135.t1.exon1Ggra2135.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 393640..394992 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2135.t1.stop1Ggra2135.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 394990..394992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2135.t1Ggra2135.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 393640..394992 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2135.t1 ID=Ggra2135.t1|Name=Ggra2135.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=451bp
MYTESIRRVFKSLSPRKFAVQATADVAVPPRSESPPRQNAAPATRSYAEA
ASAQYSRYISRLSSRAAENIPVEPVPSPNLSKSPENTFEPPMSRLHRHAV
RDVTLQFENLADCDLAHDGILPPLNGMLEENIPPYANVCSKSATITEIDD
SDDDSQELPPMHLDVDPCSHYDHFVPIGKGGSGSVYFARSKADGKQFALK
KVTPTTPAKSRALENEIRTMHAFKHDNIVQCYSAYGHQNDVWIVMEAMDV
GCLTHVLDFLRDKSYLLSENHIAYILRETLKGLWAMHSRHCMHRDIKSDN
VLVSSDGEVKLGDFEYSAELTIKSPKRRTVVGTAWWMAPETVRSSFYDYG
ADVWSIGILSIECAEWVPPLFGMESSKAMQVIRDGVQIQGFKRPDIWSPQ
FADFVRGCLVRDRDERYSVQDLLKHPFLDKACSKTQMANVFRAVRGMPPL
*
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spliced messenger RNA

>Ggra2135.t1 ID=Ggra2135.t1|Name=Ggra2135.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1353bp|location=Sequence derived from alignment at tig00000900_pilon:393640..394992+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACACAGAGTCCATTCGCCGAGTGTTCAAATCCCTCTCTCCGCGTAA
GTTTGCTGTGCAAGCCACTGCGGATGTCGCAGTACCGCCTCGTTCCGAAT
CTCCGCCGCGTCAAAATGCAGCCCCCGCTACCCGTTCGTATGCCGAGGCT
GCCTCCGCGCAGTACTCACGCTACATCTCGCGTCTGTCCTCACGAGCGGC
GGAGAATATCCCCGTAGAGCCGGTGCCCTCCCCGAACCTCTCTAAATCCC
CGGAAAATACCTTTGAGCCCCCAATGAGTCGTTTGCACCGTCATGCGGTT
CGCGATGTCACTCTGCAGTTTGAAAACCTTGCTGATTGCGATCTGGCTCA
TGATGGAATACTGCCGCCTCTAAATGGAATGTTGGAGGAGAATATTCCGC
CGTATGCAAACGTTTGCTCTAAGAGCGCTACGATAACTGAAATCGATGAT
AGCGATGACGACTCGCAAGAACTACCCCCTATGCATCTTGACGTCGATCC
GTGCTCGCATTACGATCATTTTGTCCCTATCGGGAAAGGAGGTAGTGGTA
GTGTTTATTTTGCACGTTCCAAGGCTGATGGGAAGCAGTTTGCCCTTAAG
AAGGTTACGCCCACAACTCCGGCCAAATCGCGTGCGTTGGAAAACGAGAT
CAGAACCATGCACGCATTTAAGCACGATAATATTGTGCAGTGTTATAGCG
CTTACGGTCATCAGAATGACGTGTGGATCGTTATGGAAGCAATGGATGTT
GGTTGTTTGACCCATGTGCTAGATTTCTTGCGAGACAAATCGTACTTATT
GTCTGAGAACCATATTGCGTACATCTTGAGGGAGACTTTGAAGGGTCTTT
GGGCAATGCATTCACGACATTGTATGCACAGAGATATCAAGAGTGATAAT
GTCCTCGTTTCCTCAGATGGAGAAGTCAAACTAGGCGATTTTGAATACTC
TGCTGAACTCACTATCAAGAGTCCCAAGCGACGCACGGTGGTTGGTACGG
CGTGGTGGATGGCCCCCGAAACGGTTCGAAGCAGCTTTTATGATTACGGA
GCTGATGTCTGGTCCATTGGAATTTTATCCATCGAATGCGCCGAATGGGT
GCCGCCGTTGTTCGGAATGGAGAGTTCAAAAGCGATGCAGGTGATCCGCG
ACGGAGTGCAAATCCAAGGCTTCAAGAGACCTGACATCTGGAGCCCGCAA
TTTGCGGATTTTGTGAGGGGTTGCCTTGTTCGGGATCGCGATGAACGTTA
CTCTGTGCAGGACTTGCTGAAGCATCCATTTCTGGACAAAGCATGTTCCA
AGACGCAAATGGCCAACGTCTTCAGAGCGGTGCGTGGAATGCCGCCGTTG
TAG
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protein sequence of Ggra2135.t1

>Ggra2135.t1 ID=Ggra2135.t1|Name=Ggra2135.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=451bp
MYTESIRRVFKSLSPRKFAVQATADVAVPPRSESPPRQNAAPATRSYAEA
ASAQYSRYISRLSSRAAENIPVEPVPSPNLSKSPENTFEPPMSRLHRHAV
RDVTLQFENLADCDLAHDGILPPLNGMLEENIPPYANVCSKSATITEIDD
SDDDSQELPPMHLDVDPCSHYDHFVPIGKGGSGSVYFARSKADGKQFALK
KVTPTTPAKSRALENEIRTMHAFKHDNIVQCYSAYGHQNDVWIVMEAMDV
GCLTHVLDFLRDKSYLLSENHIAYILRETLKGLWAMHSRHCMHRDIKSDN
VLVSSDGEVKLGDFEYSAELTIKSPKRRTVVGTAWWMAPETVRSSFYDYG
ADVWSIGILSIECAEWVPPLFGMESSKAMQVIRDGVQIQGFKRPDIWSPQ
FADFVRGCLVRDRDERYSVQDLLKHPFLDKACSKTQMANVFRAVRGMPPL
*
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mRNA from alignment at tig00000900_pilon:393640..394992+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2135.t1 ID=Ggra2135.t1|Name=Ggra2135.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1353bp|location=Sequence derived from alignment at tig00000900_pilon:393640..394992+ (Gracilaria gracilis GNS1m male)
ATGTACACAGAGTCCATTCGCCGAGTGTTCAAATCCCTCTCTCCGCGTAA
GTTTGCTGTGCAAGCCACTGCGGATGTCGCAGTACCGCCTCGTTCCGAAT
CTCCGCCGCGTCAAAATGCAGCCCCCGCTACCCGTTCGTATGCCGAGGCT
GCCTCCGCGCAGTACTCACGCTACATCTCGCGTCTGTCCTCACGAGCGGC
GGAGAATATCCCCGTAGAGCCGGTGCCCTCCCCGAACCTCTCTAAATCCC
CGGAAAATACCTTTGAGCCCCCAATGAGTCGTTTGCACCGTCATGCGGTT
CGCGATGTCACTCTGCAGTTTGAAAACCTTGCTGATTGCGATCTGGCTCA
TGATGGAATACTGCCGCCTCTAAATGGAATGTTGGAGGAGAATATTCCGC
CGTATGCAAACGTTTGCTCTAAGAGCGCTACGATAACTGAAATCGATGAT
AGCGATGACGACTCGCAAGAACTACCCCCTATGCATCTTGACGTCGATCC
GTGCTCGCATTACGATCATTTTGTCCCTATCGGGAAAGGAGGTAGTGGTA
GTGTTTATTTTGCACGTTCCAAGGCTGATGGGAAGCAGTTTGCCCTTAAG
AAGGTTACGCCCACAACTCCGGCCAAATCGCGTGCGTTGGAAAACGAGAT
CAGAACCATGCACGCATTTAAGCACGATAATATTGTGCAGTGTTATAGCG
CTTACGGTCATCAGAATGACGTGTGGATCGTTATGGAAGCAATGGATGTT
GGTTGTTTGACCCATGTGCTAGATTTCTTGCGAGACAAATCGTACTTATT
GTCTGAGAACCATATTGCGTACATCTTGAGGGAGACTTTGAAGGGTCTTT
GGGCAATGCATTCACGACATTGTATGCACAGAGATATCAAGAGTGATAAT
GTCCTCGTTTCCTCAGATGGAGAAGTCAAACTAGGCGATTTTGAATACTC
TGCTGAACTCACTATCAAGAGTCCCAAGCGACGCACGGTGGTTGGTACGG
CGTGGTGGATGGCCCCCGAAACGGTTCGAAGCAGCTTTTATGATTACGGA
GCTGATGTCTGGTCCATTGGAATTTTATCCATCGAATGCGCCGAATGGGT
GCCGCCGTTGTTCGGAATGGAGAGTTCAAAAGCGATGCAGGTGATCCGCG
ACGGAGTGCAAATCCAAGGCTTCAAGAGACCTGACATCTGGAGCCCGCAA
TTTGCGGATTTTGTGAGGGGTTGCCTTGTTCGGGATCGCGATGAACGTTA
CTCTGTGCAGGACTTGCTGAAGCATCCATTTCTGGACAAAGCATGTTCCA
AGACGCAAATGGCCAACGTCTTCAGAGCGGTGCGTGGAATGCCGCCGTTG
TAG
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Coding sequence (CDS) from alignment at tig00000900_pilon:393640..394992+

>Ggra2135.t1 ID=Ggra2135.t1|Name=Ggra2135.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1353bp|location=Sequence derived from alignment at tig00000900_pilon:393640..394992+ (Gracilaria gracilis GNS1m male)
ATGTACACAGAGTCCATTCGCCGAGTGTTCAAATCCCTCTCTCCGCGTAA
GTTTGCTGTGCAAGCCACTGCGGATGTCGCAGTACCGCCTCGTTCCGAAT
CTCCGCCGCGTCAAAATGCAGCCCCCGCTACCCGTTCGTATGCCGAGGCT
GCCTCCGCGCAGTACTCACGCTACATCTCGCGTCTGTCCTCACGAGCGGC
GGAGAATATCCCCGTAGAGCCGGTGCCCTCCCCGAACCTCTCTAAATCCC
CGGAAAATACCTTTGAGCCCCCAATGAGTCGTTTGCACCGTCATGCGGTT
CGCGATGTCACTCTGCAGTTTGAAAACCTTGCTGATTGCGATCTGGCTCA
TGATGGAATACTGCCGCCTCTAAATGGAATGTTGGAGGAGAATATTCCGC
CGTATGCAAACGTTTGCTCTAAGAGCGCTACGATAACTGAAATCGATGAT
AGCGATGACGACTCGCAAGAACTACCCCCTATGCATCTTGACGTCGATCC
GTGCTCGCATTACGATCATTTTGTCCCTATCGGGAAAGGAGGTAGTGGTA
GTGTTTATTTTGCACGTTCCAAGGCTGATGGGAAGCAGTTTGCCCTTAAG
AAGGTTACGCCCACAACTCCGGCCAAATCGCGTGCGTTGGAAAACGAGAT
CAGAACCATGCACGCATTTAAGCACGATAATATTGTGCAGTGTTATAGCG
CTTACGGTCATCAGAATGACGTGTGGATCGTTATGGAAGCAATGGATGTT
GGTTGTTTGACCCATGTGCTAGATTTCTTGCGAGACAAATCGTACTTATT
GTCTGAGAACCATATTGCGTACATCTTGAGGGAGACTTTGAAGGGTCTTT
GGGCAATGCATTCACGACATTGTATGCACAGAGATATCAAGAGTGATAAT
GTCCTCGTTTCCTCAGATGGAGAAGTCAAACTAGGCGATTTTGAATACTC
TGCTGAACTCACTATCAAGAGTCCCAAGCGACGCACGGTGGTTGGTACGG
CGTGGTGGATGGCCCCCGAAACGGTTCGAAGCAGCTTTTATGATTACGGA
GCTGATGTCTGGTCCATTGGAATTTTATCCATCGAATGCGCCGAATGGGT
GCCGCCGTTGTTCGGAATGGAGAGTTCAAAAGCGATGCAGGTGATCCGCG
ACGGAGTGCAAATCCAAGGCTTCAAGAGACCTGACATCTGGAGCCCGCAA
TTTGCGGATTTTGTGAGGGGTTGCCTTGTTCGGGATCGCGATGAACGTTA
CTCTGTGCAGGACTTGCTGAAGCATCCATTTCTGGACAAAGCATGTTCCA
AGACGCAAATGGCCAACGTCTTCAGAGCGGTGCGTGGAATGCCGCCGTTG
TAG
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