Ggra2131.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2131.t1
Unique NameGgra2131.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length240
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:386771..387604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD23174
PFAMsAIG2_2
Max annot lvl2759|Eukaryota
Evalue1.18e-08
EggNOG OGs2DP66@1|root,2S68V@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2131Ggra2131Gracilaria gracilis GNS1m malegenetig00000900_pilon 386771..387604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2131.t1Ggra2131.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 386771..387604 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2131.t1.stop1Ggra2131.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 386771..386773 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2131.t1.CDS1Ggra2131.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 386771..386962 -
Ggra2131.t1.CDS2Ggra2131.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000900_pilon 387077..387604 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2131.t1.exon1Ggra2131.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 386771..386962 -
Ggra2131.t1.exon2Ggra2131.t1.exon2Gracilaria gracilis GNS1m maleexontig00000900_pilon 387077..387604 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2131.t1.intron1Ggra2131.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000900_pilon 386963..387076 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2131.t1.start1Ggra2131.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 387602..387604 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2131.t1 ID=Ggra2131.t1|Name=Ggra2131.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=240bp
MGRRGTTGCNTATDAPNIEFTNAWTARLKNWQLCFHHRGHPPVDPSFASI
RPSEGDDVHGLVYEIATSSAWERLMRSECVTRPAQRSSYVVKQVPVECFL
SSEESTIKLVYTLVTAPHKKIPRNLESYILPSRRYMSWLISGAKDEQLPR
HYIDHLESLPVARGWNAPILEEMSMMSILQHERVVLMLCKLSMFASYFLP
VLFAFVLFAARKEPWESYQKLRKREMAPGTVHSSSVSNT*
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spliced messenger RNA

>Ggra2131.t1 ID=Ggra2131.t1|Name=Ggra2131.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00000900_pilon:386771..387604- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAGGCGGGGTACTACGGGCTGCAATACCGCAACTGATGCACCTAA
CATTGAATTCACGAACGCATGGACTGCTCGCCTCAAAAACTGGCAACTGT
GCTTCCATCATCGAGGTCACCCTCCTGTGGACCCATCCTTTGCTTCAATA
AGGCCTAGTGAAGGAGACGATGTGCATGGACTCGTATATGAAATAGCCAC
TAGTAGTGCTTGGGAGAGGTTAATGCGAAGTGAATGCGTCACTCGTCCCG
CACAACGGAGTTCGTACGTGGTAAAGCAAGTCCCTGTAGAATGTTTTCTA
TCATCAGAGGAGAGTACAATCAAACTCGTATATACATTGGTCACAGCGCC
GCATAAGAAAATACCCCGAAACTTGGAATCTTACATTTTGCCTTCAAGAC
GTTATATGAGTTGGTTGATATCAGGAGCGAAGGATGAACAACTTCCACGG
CATTATATCGATCATTTAGAATCCCTTCCCGTTGCCAGGGGTTGGAATGC
CCCCATTTTGGAGGAGATGAGCATGATGAGTATCCTTCAACATGAACGTG
TTGTTCTGATGCTGTGCAAGCTTTCAATGTTTGCCAGTTACTTTCTTCCC
GTTCTTTTTGCTTTTGTGCTTTTTGCTGCAAGAAAGGAACCATGGGAATC
TTATCAAAAGCTGAGGAAACGAGAGATGGCACCTGGCACTGTGCATTCCT
CGAGTGTTTCCAACACGTAA
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protein sequence of Ggra2131.t1

>Ggra2131.t1 ID=Ggra2131.t1|Name=Ggra2131.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=240bp
MGRRGTTGCNTATDAPNIEFTNAWTARLKNWQLCFHHRGHPPVDPSFASI
RPSEGDDVHGLVYEIATSSAWERLMRSECVTRPAQRSSYVVKQVPVECFL
SSEESTIKLVYTLVTAPHKKIPRNLESYILPSRRYMSWLISGAKDEQLPR
HYIDHLESLPVARGWNAPILEEMSMMSILQHERVVLMLCKLSMFASYFLP
VLFAFVLFAARKEPWESYQKLRKREMAPGTVHSSSVSNT*
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mRNA from alignment at tig00000900_pilon:386771..387604-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2131.t1 ID=Ggra2131.t1|Name=Ggra2131.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00000900_pilon:386771..387604- (Gracilaria gracilis GNS1m male)
ATGGGAAGGCGGGGTACTACGGGCTGCAATACCGCAACTGATGCACCTAA
CATTGAATTCACGAACGCATGGACTGCTCGCCTCAAAAACTGGCAACTGT
GCTTCCATCATCGAGGTCACCCTCCTGTGGACCCATCCTTTGCTTCAATA
AGGCCTAGTGAAGGAGACGATGTGCATGGACTCGTATATGAAATAGCCAC
TAGTAGTGCTTGGGAGAGGTTAATGCGAAGTGAATGCGTCACTCGTCCCG
CACAACGGAGTTCGTACGTGGTAAAGCAAGTCCCTGTAGAATGTTTTCTA
TCATCAGAGGAGAGTACAATCAAACTCGTATATACATTGGTCACAGCGCC
GCATAAGAAAATACCCCGAAACTTGGAATCTTACATTTTGCCTTCAAGAC
GTTATATGAGTTGGTTGATATCAGGAGCGAAGGATGAACAACTTCCACGG
CATTATATCGATCATTTAGAATCCCTTCCCGTTGCCAGGGGTTGGAATGC
CCCCATTTTGGAGGAGATGAGCATGATGGTAAGAATCTTGATGTTTAATT
TACAGAAAGCGAACTTAGCGCACTGGTTGAACCCATTGTTGACGTTAGGT
GTACATGCTTACGCACACCATGAGTGCCTTGCGCGAAAAAAGAGTATCCT
TCAACATGAACGTGTTGTTCTGATGCTGTGCAAGCTTTCAATGTTTGCCA
GTTACTTTCTTCCCGTTCTTTTTGCTTTTGTGCTTTTTGCTGCAAGAAAG
GAACCATGGGAATCTTATCAAAAGCTGAGGAAACGAGAGATGGCACCTGG
CACTGTGCATTCCTCGAGTGTTTCCAACACGTAA
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Coding sequence (CDS) from alignment at tig00000900_pilon:386771..387604-

>Ggra2131.t1 ID=Ggra2131.t1|Name=Ggra2131.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=720bp|location=Sequence derived from alignment at tig00000900_pilon:386771..387604- (Gracilaria gracilis GNS1m male)
ATGGGAAGGCGGGGTACTACGGGCTGCAATACCGCAACTGATGCACCTAA
CATTGAATTCACGAACGCATGGACTGCTCGCCTCAAAAACTGGCAACTGT
GCTTCCATCATCGAGGTCACCCTCCTGTGGACCCATCCTTTGCTTCAATA
AGGCCTAGTGAAGGAGACGATGTGCATGGACTCGTATATGAAATAGCCAC
TAGTAGTGCTTGGGAGAGGTTAATGCGAAGTGAATGCGTCACTCGTCCCG
CACAACGGAGTTCGTACGTGGTAAAGCAAGTCCCTGTAGAATGTTTTCTA
TCATCAGAGGAGAGTACAATCAAACTCGTATATACATTGGTCACAGCGCC
GCATAAGAAAATACCCCGAAACTTGGAATCTTACATTTTGCCTTCAAGAC
GTTATATGAGTTGGTTGATATCAGGAGCGAAGGATGAACAACTTCCACGG
CATTATATCGATCATTTAGAATCCCTTCCCGTTGCCAGGGGTTGGAATGC
CCCCATTTTGGAGGAGATGAGCATGATGAGTATCCTTCAACATGAACGTG
TTGTTCTGATGCTGTGCAAGCTTTCAATGTTTGCCAGTTACTTTCTTCCC
GTTCTTTTTGCTTTTGTGCTTTTTGCTGCAAGAAAGGAACCATGGGAATC
TTATCAAAAGCTGAGGAAACGAGAGATGGCACCTGGCACTGTGCATTCCT
CGAGTGTTTCCAACACGTAA
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