Ggra2130.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2130.t1
Unique Name	Ggra2130.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	290

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:382770..383639 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703751.1
Preferred name	YIPF3
PFAMs	Yip1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K00688,ko:K15149
KEGG Reaction	R02111
KEGG Pathway	ko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006810,GO:0008150,GO:0012505,GO:0016020,GO:0016021,GO:0016192,GO:0017016,GO:0017137,GO:0019899,GO:0030133,GO:0031224,GO:0031267,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0051020,GO:0051179,GO:0051234,GO:0097708
Evalue	2.26e-15
EggNOG OGs	KOG3114@1\|root,KOG3114@2759\|Eukaryota
EC	2.4.1.1
Description	Rab GTPase binding
COG category	S
CAZy	GT35
BRITE	ko00000,ko00001,ko01000,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2130	Ggra2130	Gracilaria gracilis GNS1m male	gene	tig00000900_pilon 382770..383639 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2130.t1.start1	Ggra2130.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000900_pilon 382770..382772 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2130.t1.CDS1	Ggra2130.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 382770..383639 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2130.t1.exon1	Ggra2130.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 382770..383639 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2130.t1.stop1	Ggra2130.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000900_pilon 383637..383639 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2130.t1	Ggra2130.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000900_pilon 382770..383639 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000900_pilon:382770..383639+
coding sequence from alignment at tig00000900_pilon:382770..383639+

mRNA sequence

>Ggra2130.t1 ID=Ggra2130.t1|Name=Ggra2130.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=290bp
MTASITTAASVAPASNPFDAAYAPVATGDGARGNPFALYDDGVSDDGADT
GHWENEPAGTRSEPRFYHPRFYAAYFDINIADLATRLFRALLPYKPLLGW
ADGDEDELGGTSVPDLYAPVWVTTTLVLALSMGAKCAEFLANVFRKKETT
SLEPSISSLEFSRLWRAASVLYFYVFVFPVVLTLFQCLFAKRSIAQSSVR
SHPLVGTVMVYGYSMTPVVVAAFVATLPIRTAQIASMTVAFCIGAFVIML
NLWRDVSVQHRSLTYFVRLLAVVAHAAVGTALIFIFFLR*

spliced messenger RNA

>Ggra2130.t1 ID=Ggra2130.t1|Name=Ggra2130.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=870bp|location=Sequence derived from alignment at tig00000900_pilon:382770..383639+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGCGTCCATCACTACTGCGGCTTCGGTGGCGCCGGCGTCCAACCC
GTTCGACGCAGCGTACGCGCCTGTTGCCACGGGCGACGGCGCGCGCGGTA
ATCCGTTCGCGCTTTATGACGACGGCGTTTCTGACGATGGTGCTGACACC
GGTCATTGGGAAAATGAGCCTGCCGGAACACGCTCGGAACCGCGCTTCTA
TCACCCTCGCTTCTACGCCGCGTACTTCGATATAAACATCGCTGACTTGG
CTACCAGGCTGTTTCGTGCCTTGTTGCCGTACAAGCCGCTGCTGGGATGG
GCCGACGGCGACGAGGATGAGCTGGGAGGCACTTCTGTGCCAGATCTTTA
CGCACCGGTGTGGGTTACCACCACTCTGGTGCTTGCGCTCTCGATGGGCG
CCAAGTGCGCAGAGTTTCTCGCCAATGTGTTTCGGAAGAAGGAGACCACT
TCGCTGGAACCGTCCATCTCGAGTTTGGAGTTTTCGCGTCTGTGGCGCGC
TGCTTCCGTGCTCTACTTCTACGTTTTTGTGTTCCCAGTCGTGTTGACTT
TGTTTCAGTGTCTGTTTGCAAAGCGTTCCATAGCCCAGTCTTCTGTGAGA
TCGCACCCGCTGGTGGGCACTGTCATGGTGTACGGCTATTCCATGACGCC
GGTTGTTGTGGCTGCGTTCGTTGCCACTTTGCCCATTCGCACAGCACAGA
TTGCGTCCATGACTGTTGCGTTTTGCATAGGCGCTTTTGTCATTATGCTC
AATTTGTGGAGGGACGTTTCTGTGCAACATCGCTCTCTTACCTACTTTGT
GCGCTTGCTTGCGGTTGTAGCACATGCTGCCGTTGGTACAGCTCTTATTT
TCATCTTCTTCCTGCGCTGA

protein sequence of Ggra2130.t1

>Ggra2130.t1 ID=Ggra2130.t1|Name=Ggra2130.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=290bp
MTASITTAASVAPASNPFDAAYAPVATGDGARGNPFALYDDGVSDDGADT
GHWENEPAGTRSEPRFYHPRFYAAYFDINIADLATRLFRALLPYKPLLGW
ADGDEDELGGTSVPDLYAPVWVTTTLVLALSMGAKCAEFLANVFRKKETT
SLEPSISSLEFSRLWRAASVLYFYVFVFPVVLTLFQCLFAKRSIAQSSVR
SHPLVGTVMVYGYSMTPVVVAAFVATLPIRTAQIASMTVAFCIGAFVIML
NLWRDVSVQHRSLTYFVRLLAVVAHAAVGTALIFIFFLR*

mRNA from alignment at tig00000900_pilon:382770..383639+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2130.t1 ID=Ggra2130.t1|Name=Ggra2130.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=870bp|location=Sequence derived from alignment at tig00000900_pilon:382770..383639+ (Gracilaria gracilis GNS1m male)
ATGACGGCGTCCATCACTACTGCGGCTTCGGTGGCGCCGGCGTCCAACCC
GTTCGACGCAGCGTACGCGCCTGTTGCCACGGGCGACGGCGCGCGCGGTA
ATCCGTTCGCGCTTTATGACGACGGCGTTTCTGACGATGGTGCTGACACC
GGTCATTGGGAAAATGAGCCTGCCGGAACACGCTCGGAACCGCGCTTCTA
TCACCCTCGCTTCTACGCCGCGTACTTCGATATAAACATCGCTGACTTGG
CTACCAGGCTGTTTCGTGCCTTGTTGCCGTACAAGCCGCTGCTGGGATGG
GCCGACGGCGACGAGGATGAGCTGGGAGGCACTTCTGTGCCAGATCTTTA
CGCACCGGTGTGGGTTACCACCACTCTGGTGCTTGCGCTCTCGATGGGCG
CCAAGTGCGCAGAGTTTCTCGCCAATGTGTTTCGGAAGAAGGAGACCACT
TCGCTGGAACCGTCCATCTCGAGTTTGGAGTTTTCGCGTCTGTGGCGCGC
TGCTTCCGTGCTCTACTTCTACGTTTTTGTGTTCCCAGTCGTGTTGACTT
TGTTTCAGTGTCTGTTTGCAAAGCGTTCCATAGCCCAGTCTTCTGTGAGA
TCGCACCCGCTGGTGGGCACTGTCATGGTGTACGGCTATTCCATGACGCC
GGTTGTTGTGGCTGCGTTCGTTGCCACTTTGCCCATTCGCACAGCACAGA
TTGCGTCCATGACTGTTGCGTTTTGCATAGGCGCTTTTGTCATTATGCTC
AATTTGTGGAGGGACGTTTCTGTGCAACATCGCTCTCTTACCTACTTTGT
GCGCTTGCTTGCGGTTGTAGCACATGCTGCCGTTGGTACAGCTCTTATTT
TCATCTTCTTCCTGCGCTGA

Coding sequence (CDS) from alignment at tig00000900_pilon:382770..383639+

>Ggra2130.t1 ID=Ggra2130.t1|Name=Ggra2130.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=870bp|location=Sequence derived from alignment at tig00000900_pilon:382770..383639+ (Gracilaria gracilis GNS1m male)
ATGACGGCGTCCATCACTACTGCGGCTTCGGTGGCGCCGGCGTCCAACCC
GTTCGACGCAGCGTACGCGCCTGTTGCCACGGGCGACGGCGCGCGCGGTA
ATCCGTTCGCGCTTTATGACGACGGCGTTTCTGACGATGGTGCTGACACC
GGTCATTGGGAAAATGAGCCTGCCGGAACACGCTCGGAACCGCGCTTCTA
TCACCCTCGCTTCTACGCCGCGTACTTCGATATAAACATCGCTGACTTGG
CTACCAGGCTGTTTCGTGCCTTGTTGCCGTACAAGCCGCTGCTGGGATGG
GCCGACGGCGACGAGGATGAGCTGGGAGGCACTTCTGTGCCAGATCTTTA
CGCACCGGTGTGGGTTACCACCACTCTGGTGCTTGCGCTCTCGATGGGCG
CCAAGTGCGCAGAGTTTCTCGCCAATGTGTTTCGGAAGAAGGAGACCACT
TCGCTGGAACCGTCCATCTCGAGTTTGGAGTTTTCGCGTCTGTGGCGCGC
TGCTTCCGTGCTCTACTTCTACGTTTTTGTGTTCCCAGTCGTGTTGACTT
TGTTTCAGTGTCTGTTTGCAAAGCGTTCCATAGCCCAGTCTTCTGTGAGA
TCGCACCCGCTGGTGGGCACTGTCATGGTGTACGGCTATTCCATGACGCC
GGTTGTTGTGGCTGCGTTCGTTGCCACTTTGCCCATTCGCACAGCACAGA
TTGCGTCCATGACTGTTGCGTTTTGCATAGGCGCTTTTGTCATTATGCTC
AATTTGTGGAGGGACGTTTCTGTGCAACATCGCTCTCTTACCTACTTTGT
GCGCTTGCTTGCGGTTGTAGCACATGCTGCCGTTGGTACAGCTCTTATTT
TCATCTTCTTCCTGCGCTGA