Ggra2126.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2126.t1
Unique NameGgra2126.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length432
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:366283..367578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703958.1
Preferred namesrk1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K08286,ko:K08794
KEGG Pathwayko04921,ko04925,map04921,map04925
GOsGO:0000166,GO:0000935,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007231,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009628,GO:0009987,GO:0010389,GO:0010515,GO:0010564,GO:0010948,GO:0010972,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0023052,GO:0030428,GO:0030554,GO:0031135,GO:0031137,GO:0031138,GO:0031647,GO:0031974,GO:0031981,GO:0032092,GO:0032153,GO:0032155,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0033043,GO:0033554,GO:0034399,GO:0034599,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040020,GO:0042221,GO:0042763,GO:0042764,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043900,GO:0043901,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045786,GO:0045930,GO:0046999,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051098,GO:0051099,GO:0051128,GO:0051285,GO:0051286,GO:0051445,GO:0051716,GO:0051726,GO:0051783,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071214,GO:0071470,GO:0071704,GO:0071944,GO:0072324,GO:0097159,GO:0097367,GO:0099568,GO:0099738,GO:0104004,GO:0140096,GO:1900180,GO:1900181,GO:1901265,GO:1901363,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903827,GO:1903828,GO:2000241,GO:2000242
Evalue1.04e-36
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
EC2.7.11.17
Descriptionprotein serine/threonine kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2126Ggra2126Gracilaria gracilis GNS1m malegenetig00000900_pilon 366283..367578 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2126.t1.stop1Ggra2126.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 366283..366285 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2126.t1.CDS1Ggra2126.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 366283..367578 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2126.t1.exon1Ggra2126.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 366283..367578 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2126.t1.start1Ggra2126.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 367576..367578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2126.t1Ggra2126.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 366283..367578 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2126.t1 ID=Ggra2126.t1|Name=Ggra2126.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=432bp
MPKLAHPPPAAVHGLLAVKIGAPFAKRVRRVAHLENALLELRRNEGAPVE
WSMRVSDVAVTSDANKLCITLVWRTLRMRLYVSSHAKFGMWLKALQQSLW
WQLQRYYHLEPQPFAHGHCAAVYRAHDRATRAVVAVKHIDARAAHAGAHV
VSRELRVCKLVHHCNLVHVRDVFESSNGAYIVMDAVEHTLQQLIERSCTV
SERVAAHLTKQLLCALAYLHALNIVHRDVKPDNILLTELSAKPTLKLCDF
GLANFTANRVWRRRSCSYGARCASAATEHNEHDEHDAHDARRPSPRAGGF
TKPMPLRRWAHAPTTTDDDDGSGGIDGQTLTTAVGAPSFTAPELLKRRAY
GAPVDVWACGVTLFYMLTGRLPFAGDSVRAVTDAIRGARGGAPPADVSLG
AADLLGRMLRADPRQRITAESALQHHWLYSH*
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spliced messenger RNA

>Ggra2126.t1 ID=Ggra2126.t1|Name=Ggra2126.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1296bp|location=Sequence derived from alignment at tig00000900_pilon:366283..367578- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAAGCTCGCACACCCGCCGCCGGCGGCCGTGCACGGGCTGCTCGC
CGTGAAGATTGGCGCGCCGTTTGCGAAGCGCGTGCGTCGCGTGGCGCACT
TAGAGAACGCGCTGCTAGAGCTCCGGCGCAATGAGGGCGCGCCCGTCGAA
TGGAGCATGCGCGTGAGCGATGTAGCCGTCACATCGGACGCCAACAAGCT
GTGCATCACGCTTGTGTGGCGCACACTGCGCATGCGTCTGTATGTGTCCT
CGCACGCAAAGTTTGGCATGTGGCTCAAGGCGCTGCAACAGTCGCTGTGG
TGGCAGCTGCAGCGCTACTACCACCTTGAGCCGCAGCCGTTTGCGCACGG
CCACTGCGCCGCCGTCTACCGCGCGCACGATCGCGCCACGCGCGCCGTCG
TCGCCGTCAAGCACATCGACGCGCGCGCCGCACACGCCGGCGCACACGTA
GTGAGTCGGGAGCTGCGCGTGTGCAAGCTGGTGCACCACTGCAACTTGGT
GCACGTGCGCGACGTGTTTGAGAGTAGCAACGGCGCTTACATCGTCATGG
ACGCCGTGGAGCACACGCTGCAGCAGCTCATAGAGCGCTCGTGCACCGTG
TCTGAGCGCGTGGCCGCGCACCTCACCAAGCAGCTGCTGTGTGCGCTGGC
CTATCTGCACGCGCTCAACATCGTGCACCGCGACGTCAAGCCGGACAACA
TCCTGCTCACGGAGCTGTCCGCCAAGCCCACGCTCAAGCTGTGCGATTTT
GGGCTGGCAAACTTCACTGCCAACCGTGTGTGGCGCCGCCGCTCGTGCTC
GTACGGCGCGCGCTGCGCCTCCGCTGCCACCGAGCACAACGAGCATGACG
AGCACGACGCACACGACGCGCGCCGCCCGTCGCCGCGCGCCGGTGGCTTC
ACCAAGCCGATGCCACTGCGGCGGTGGGCGCACGCGCCAACCACCACCGA
CGACGATGACGGCAGCGGCGGCATCGACGGACAGACGCTGACGACGGCGG
TGGGCGCGCCATCGTTCACGGCGCCGGAGCTGCTCAAGCGGCGCGCGTAC
GGCGCGCCGGTGGACGTGTGGGCGTGCGGCGTGACGCTGTTCTACATGCT
CACGGGGCGGCTGCCGTTCGCGGGCGACTCGGTGCGCGCCGTGACGGACG
CCATCCGCGGCGCGCGCGGCGGCGCGCCGCCCGCCGACGTGTCGCTCGGC
GCCGCCGACCTGCTCGGGCGCATGCTGCGCGCCGACCCGCGCCAGCGCAT
CACCGCCGAGAGCGCGCTGCAGCACCATTGGCTGTATTCGCACTAA
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protein sequence of Ggra2126.t1

>Ggra2126.t1 ID=Ggra2126.t1|Name=Ggra2126.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=432bp
MPKLAHPPPAAVHGLLAVKIGAPFAKRVRRVAHLENALLELRRNEGAPVE
WSMRVSDVAVTSDANKLCITLVWRTLRMRLYVSSHAKFGMWLKALQQSLW
WQLQRYYHLEPQPFAHGHCAAVYRAHDRATRAVVAVKHIDARAAHAGAHV
VSRELRVCKLVHHCNLVHVRDVFESSNGAYIVMDAVEHTLQQLIERSCTV
SERVAAHLTKQLLCALAYLHALNIVHRDVKPDNILLTELSAKPTLKLCDF
GLANFTANRVWRRRSCSYGARCASAATEHNEHDEHDAHDARRPSPRAGGF
TKPMPLRRWAHAPTTTDDDDGSGGIDGQTLTTAVGAPSFTAPELLKRRAY
GAPVDVWACGVTLFYMLTGRLPFAGDSVRAVTDAIRGARGGAPPADVSLG
AADLLGRMLRADPRQRITAESALQHHWLYSH*
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mRNA from alignment at tig00000900_pilon:366283..367578-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2126.t1 ID=Ggra2126.t1|Name=Ggra2126.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1296bp|location=Sequence derived from alignment at tig00000900_pilon:366283..367578- (Gracilaria gracilis GNS1m male)
ATGCCCAAGCTCGCACACCCGCCGCCGGCGGCCGTGCACGGGCTGCTCGC
CGTGAAGATTGGCGCGCCGTTTGCGAAGCGCGTGCGTCGCGTGGCGCACT
TAGAGAACGCGCTGCTAGAGCTCCGGCGCAATGAGGGCGCGCCCGTCGAA
TGGAGCATGCGCGTGAGCGATGTAGCCGTCACATCGGACGCCAACAAGCT
GTGCATCACGCTTGTGTGGCGCACACTGCGCATGCGTCTGTATGTGTCCT
CGCACGCAAAGTTTGGCATGTGGCTCAAGGCGCTGCAACAGTCGCTGTGG
TGGCAGCTGCAGCGCTACTACCACCTTGAGCCGCAGCCGTTTGCGCACGG
CCACTGCGCCGCCGTCTACCGCGCGCACGATCGCGCCACGCGCGCCGTCG
TCGCCGTCAAGCACATCGACGCGCGCGCCGCACACGCCGGCGCACACGTA
GTGAGTCGGGAGCTGCGCGTGTGCAAGCTGGTGCACCACTGCAACTTGGT
GCACGTGCGCGACGTGTTTGAGAGTAGCAACGGCGCTTACATCGTCATGG
ACGCCGTGGAGCACACGCTGCAGCAGCTCATAGAGCGCTCGTGCACCGTG
TCTGAGCGCGTGGCCGCGCACCTCACCAAGCAGCTGCTGTGTGCGCTGGC
CTATCTGCACGCGCTCAACATCGTGCACCGCGACGTCAAGCCGGACAACA
TCCTGCTCACGGAGCTGTCCGCCAAGCCCACGCTCAAGCTGTGCGATTTT
GGGCTGGCAAACTTCACTGCCAACCGTGTGTGGCGCCGCCGCTCGTGCTC
GTACGGCGCGCGCTGCGCCTCCGCTGCCACCGAGCACAACGAGCATGACG
AGCACGACGCACACGACGCGCGCCGCCCGTCGCCGCGCGCCGGTGGCTTC
ACCAAGCCGATGCCACTGCGGCGGTGGGCGCACGCGCCAACCACCACCGA
CGACGATGACGGCAGCGGCGGCATCGACGGACAGACGCTGACGACGGCGG
TGGGCGCGCCATCGTTCACGGCGCCGGAGCTGCTCAAGCGGCGCGCGTAC
GGCGCGCCGGTGGACGTGTGGGCGTGCGGCGTGACGCTGTTCTACATGCT
CACGGGGCGGCTGCCGTTCGCGGGCGACTCGGTGCGCGCCGTGACGGACG
CCATCCGCGGCGCGCGCGGCGGCGCGCCGCCCGCCGACGTGTCGCTCGGC
GCCGCCGACCTGCTCGGGCGCATGCTGCGCGCCGACCCGCGCCAGCGCAT
CACCGCCGAGAGCGCGCTGCAGCACCATTGGCTGTATTCGCACTAA
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Coding sequence (CDS) from alignment at tig00000900_pilon:366283..367578-

>Ggra2126.t1 ID=Ggra2126.t1|Name=Ggra2126.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1296bp|location=Sequence derived from alignment at tig00000900_pilon:366283..367578- (Gracilaria gracilis GNS1m male)
ATGCCCAAGCTCGCACACCCGCCGCCGGCGGCCGTGCACGGGCTGCTCGC
CGTGAAGATTGGCGCGCCGTTTGCGAAGCGCGTGCGTCGCGTGGCGCACT
TAGAGAACGCGCTGCTAGAGCTCCGGCGCAATGAGGGCGCGCCCGTCGAA
TGGAGCATGCGCGTGAGCGATGTAGCCGTCACATCGGACGCCAACAAGCT
GTGCATCACGCTTGTGTGGCGCACACTGCGCATGCGTCTGTATGTGTCCT
CGCACGCAAAGTTTGGCATGTGGCTCAAGGCGCTGCAACAGTCGCTGTGG
TGGCAGCTGCAGCGCTACTACCACCTTGAGCCGCAGCCGTTTGCGCACGG
CCACTGCGCCGCCGTCTACCGCGCGCACGATCGCGCCACGCGCGCCGTCG
TCGCCGTCAAGCACATCGACGCGCGCGCCGCACACGCCGGCGCACACGTA
GTGAGTCGGGAGCTGCGCGTGTGCAAGCTGGTGCACCACTGCAACTTGGT
GCACGTGCGCGACGTGTTTGAGAGTAGCAACGGCGCTTACATCGTCATGG
ACGCCGTGGAGCACACGCTGCAGCAGCTCATAGAGCGCTCGTGCACCGTG
TCTGAGCGCGTGGCCGCGCACCTCACCAAGCAGCTGCTGTGTGCGCTGGC
CTATCTGCACGCGCTCAACATCGTGCACCGCGACGTCAAGCCGGACAACA
TCCTGCTCACGGAGCTGTCCGCCAAGCCCACGCTCAAGCTGTGCGATTTT
GGGCTGGCAAACTTCACTGCCAACCGTGTGTGGCGCCGCCGCTCGTGCTC
GTACGGCGCGCGCTGCGCCTCCGCTGCCACCGAGCACAACGAGCATGACG
AGCACGACGCACACGACGCGCGCCGCCCGTCGCCGCGCGCCGGTGGCTTC
ACCAAGCCGATGCCACTGCGGCGGTGGGCGCACGCGCCAACCACCACCGA
CGACGATGACGGCAGCGGCGGCATCGACGGACAGACGCTGACGACGGCGG
TGGGCGCGCCATCGTTCACGGCGCCGGAGCTGCTCAAGCGGCGCGCGTAC
GGCGCGCCGGTGGACGTGTGGGCGTGCGGCGTGACGCTGTTCTACATGCT
CACGGGGCGGCTGCCGTTCGCGGGCGACTCGGTGCGCGCCGTGACGGACG
CCATCCGCGGCGCGCGCGGCGGCGCGCCGCCCGCCGACGTGTCGCTCGGC
GCCGCCGACCTGCTCGGGCGCATGCTGCGCGCCGACCCGCGCCAGCGCAT
CACCGCCGAGAGCGCGCTGCAGCACCATTGGCTGTATTCGCACTAA
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