Ggra2121.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2121.t1
Unique NameGgra2121.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:346383..346952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2121Ggra2121Gracilaria gracilis GNS1m malegenetig00000900_pilon 346383..346952 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2121.t1.start1Ggra2121.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 346383..346385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2121.t1.CDS1Ggra2121.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 346383..346952 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2121.t1.exon1Ggra2121.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 346383..346952 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2121.t1.stop1Ggra2121.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 346950..346952 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2121.t1Ggra2121.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 346383..346952 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2121.t1 ID=Ggra2121.t1|Name=Ggra2121.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=190bp
MGDRFRSLGAVTRVTVIVIVPVMGVGVIAQVTGVVVIIQVVAVGVIDQVT
ATSVTAQVMTVDTMARGTAVAVVLGEICRWIGSGVKSGCDSGDVTRFGVE
LGEASPFVGDFESERGYDIVSWSGECRSAVAAKDIRPCVPNVAGAHEDSP
PLENTLYALALVGYSPLVCAPYVLRVPANGFCYSRSANT*
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spliced messenger RNA

>Ggra2121.t1 ID=Ggra2121.t1|Name=Ggra2121.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000900_pilon:346383..346952+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGACAGGTTTCGTTCTCTTGGCGCTGTGACTCGGGTGACGGTTAT
TGTGATTGTTCCGGTGATGGGTGTTGGTGTGATAGCTCAGGTGACGGGTG
TTGTTGTGATTATTCAAGTGGTGGCTGTTGGTGTGATAGACCAGGTGACG
GCTACCTCTGTGACTGCTCAGGTAATGACTGTTGATACGATGGCTCGGGG
CACGGCTGTTGCTGTGGTTCTAGGTGAGATATGCCGTTGGATTGGCTCAG
GAGTAAAATCCGGCTGCGATTCAGGTGACGTAACACGATTTGGAGTGGAA
CTTGGAGAAGCATCACCCTTTGTTGGTGACTTTGAAAGCGAACGGGGTTA
TGACATTGTGTCTTGGTCCGGTGAATGCCGCTCTGCAGTGGCAGCAAAGG
ATATCCGGCCCTGTGTGCCAAATGTTGCCGGAGCACACGAGGATTCTCCA
CCGCTCGAAAACACACTCTACGCATTGGCTTTGGTTGGCTACAGCCCTCT
GGTTTGTGCTCCATATGTTCTTCGAGTACCAGCAAACGGTTTCTGTTATT
CTCGGTCAGCCAATACATAG
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protein sequence of Ggra2121.t1

>Ggra2121.t1 ID=Ggra2121.t1|Name=Ggra2121.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=190bp
MGDRFRSLGAVTRVTVIVIVPVMGVGVIAQVTGVVVIIQVVAVGVIDQVT
ATSVTAQVMTVDTMARGTAVAVVLGEICRWIGSGVKSGCDSGDVTRFGVE
LGEASPFVGDFESERGYDIVSWSGECRSAVAAKDIRPCVPNVAGAHEDSP
PLENTLYALALVGYSPLVCAPYVLRVPANGFCYSRSANT*
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mRNA from alignment at tig00000900_pilon:346383..346952+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2121.t1 ID=Ggra2121.t1|Name=Ggra2121.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000900_pilon:346383..346952+ (Gracilaria gracilis GNS1m male)
ATGGGGGACAGGTTTCGTTCTCTTGGCGCTGTGACTCGGGTGACGGTTAT
TGTGATTGTTCCGGTGATGGGTGTTGGTGTGATAGCTCAGGTGACGGGTG
TTGTTGTGATTATTCAAGTGGTGGCTGTTGGTGTGATAGACCAGGTGACG
GCTACCTCTGTGACTGCTCAGGTAATGACTGTTGATACGATGGCTCGGGG
CACGGCTGTTGCTGTGGTTCTAGGTGAGATATGCCGTTGGATTGGCTCAG
GAGTAAAATCCGGCTGCGATTCAGGTGACGTAACACGATTTGGAGTGGAA
CTTGGAGAAGCATCACCCTTTGTTGGTGACTTTGAAAGCGAACGGGGTTA
TGACATTGTGTCTTGGTCCGGTGAATGCCGCTCTGCAGTGGCAGCAAAGG
ATATCCGGCCCTGTGTGCCAAATGTTGCCGGAGCACACGAGGATTCTCCA
CCGCTCGAAAACACACTCTACGCATTGGCTTTGGTTGGCTACAGCCCTCT
GGTTTGTGCTCCATATGTTCTTCGAGTACCAGCAAACGGTTTCTGTTATT
CTCGGTCAGCCAATACATAG
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Coding sequence (CDS) from alignment at tig00000900_pilon:346383..346952+

>Ggra2121.t1 ID=Ggra2121.t1|Name=Ggra2121.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=570bp|location=Sequence derived from alignment at tig00000900_pilon:346383..346952+ (Gracilaria gracilis GNS1m male)
ATGGGGGACAGGTTTCGTTCTCTTGGCGCTGTGACTCGGGTGACGGTTAT
TGTGATTGTTCCGGTGATGGGTGTTGGTGTGATAGCTCAGGTGACGGGTG
TTGTTGTGATTATTCAAGTGGTGGCTGTTGGTGTGATAGACCAGGTGACG
GCTACCTCTGTGACTGCTCAGGTAATGACTGTTGATACGATGGCTCGGGG
CACGGCTGTTGCTGTGGTTCTAGGTGAGATATGCCGTTGGATTGGCTCAG
GAGTAAAATCCGGCTGCGATTCAGGTGACGTAACACGATTTGGAGTGGAA
CTTGGAGAAGCATCACCCTTTGTTGGTGACTTTGAAAGCGAACGGGGTTA
TGACATTGTGTCTTGGTCCGGTGAATGCCGCTCTGCAGTGGCAGCAAAGG
ATATCCGGCCCTGTGTGCCAAATGTTGCCGGAGCACACGAGGATTCTCCA
CCGCTCGAAAACACACTCTACGCATTGGCTTTGGTTGGCTACAGCCCTCT
GGTTTGTGCTCCATATGTTCTTCGAGTACCAGCAAACGGTTTCTGTTATT
CTCGGTCAGCCAATACATAG
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