Ggra2113.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2113.t2
Unique Name	Ggra2113.t2
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	418

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:322127..323380 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2113	Ggra2113	Gracilaria gracilis GNS1m male	gene	tig00000900_pilon 321557..323380 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2113.t2.start1	Ggra2113.t2.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000900_pilon 322127..322129 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2113.t2.CDS1	Ggra2113.t2.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 322127..323380 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2113.t2.exon1	Ggra2113.t2.exon1	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 322127..323380 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2113.t2.stop1	Ggra2113.t2.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000900_pilon 323378..323380 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2113.t2	Ggra2113.t2	Gracilaria gracilis GNS1m male	polypeptide	tig00000900_pilon 322127..323380 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000900_pilon:322127..323380+
coding sequence from alignment at tig00000900_pilon:322127..323380+

mRNA sequence

>Ggra2113.t2 ID=Ggra2113.t2|Name=Ggra2113.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=418bp
MPAAHAFVRHSLLHDVRMVQNANMEVPHFQHKLASELTALLKQPISFVAS
RKRTARSLMQHINCFEPLQCEILDLQRSRAERREHDLFYCAVAVRKRDEL
PQPFHERDFVCVASHFSVETARIAALEQAIDIINAVRTPHTPEHLTDIKP
LQLQMRASALGEQVPEMEVHFSSDGRWQYDADYHHMASLLERVGAPGVTA
AWHQLDAQQIQQKIQTLRRDASEKDDGWDAHDGRYDAFLGVRKSVERSDG
RPQGEPAMCPSAVSKCMSIGTDIALNSQLARRHKAPFHAIEDAQRVVQLV
TESVDELATLSVQQRSARVKAYHVLGSNAAKLWSVQSSMQDASQERLQVV
AESERRGGMSHVMQRALLGDNGLVDVDDLRVNGAYVALGMCVDSVGCSSA
MAWLSGAEQIATDGRER*

spliced messenger RNA

>Ggra2113.t2 ID=Ggra2113.t2|Name=Ggra2113.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1254bp|location=Sequence derived from alignment at tig00000900_pilon:322127..323380+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCCGCCCATGCCTTTGTGCGCCACTCGCTGCTGCACGACGTTCG
CATGGTGCAAAACGCCAACATGGAGGTGCCCCACTTCCAGCACAAGCTGG
CCAGCGAGCTCACTGCGCTGCTCAAGCAGCCCATATCGTTCGTGGCCTCG
CGCAAGCGCACCGCGCGCTCGCTCATGCAGCACATCAACTGCTTCGAACC
GCTGCAGTGCGAGATTCTAGACCTGCAGCGCAGCCGCGCCGAGCGCCGCG
AACACGACCTGTTTTACTGCGCCGTGGCCGTTCGGAAGCGAGATGAGCTG
CCTCAACCTTTTCATGAGCGCGACTTTGTTTGCGTCGCGTCGCACTTTTC
GGTCGAGACTGCGCGCATCGCTGCGTTGGAGCAGGCCATTGACATAATCA
ACGCCGTCAGAACGCCGCACACTCCCGAGCACCTGACGGATATCAAACCG
CTGCAGCTGCAGATGCGTGCGAGTGCGTTGGGCGAGCAGGTGCCAGAGAT
GGAGGTGCACTTCTCGAGCGACGGACGTTGGCAGTATGATGCAGATTACC
ATCACATGGCCAGCCTTCTTGAGCGTGTAGGCGCGCCCGGTGTCACTGCC
GCATGGCACCAGCTAGACGCGCAGCAGATTCAACAAAAAATCCAAACGCT
GCGACGAGACGCAAGCGAAAAAGACGACGGCTGGGACGCGCATGATGGCC
GATATGATGCCTTTCTTGGTGTTCGTAAAAGCGTCGAGCGCAGCGATGGT
AGACCTCAAGGTGAACCCGCCATGTGTCCGTCCGCTGTGTCAAAGTGCAT
GTCTATAGGAACTGATATTGCGCTCAACAGCCAACTGGCTCGTCGTCACA
AAGCGCCGTTCCATGCCATTGAGGATGCGCAACGGGTTGTGCAACTGGTT
ACGGAGTCGGTGGATGAACTTGCTACACTTTCAGTGCAGCAGCGAAGCGC
CAGGGTGAAGGCATATCATGTGCTGGGTAGTAACGCCGCCAAGCTGTGGA
GTGTGCAGAGCAGCATGCAAGACGCCAGTCAGGAACGGTTGCAAGTTGTG
GCTGAGAGTGAGCGCAGAGGAGGCATGTCACACGTTATGCAGCGCGCTTT
GCTTGGTGACAACGGACTGGTGGATGTCGATGACTTGAGAGTGAATGGCG
CCTATGTGGCCCTTGGAATGTGTGTCGATTCTGTTGGCTGCTCGTCCGCC
ATGGCGTGGTTGTCCGGTGCCGAACAAATTGCTACCGACGGCCGTGAGCG
ATAG

protein sequence of Ggra2113.t2

>Ggra2113.t2 ID=Ggra2113.t2|Name=Ggra2113.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=418bp
MPAAHAFVRHSLLHDVRMVQNANMEVPHFQHKLASELTALLKQPISFVAS
RKRTARSLMQHINCFEPLQCEILDLQRSRAERREHDLFYCAVAVRKRDEL
PQPFHERDFVCVASHFSVETARIAALEQAIDIINAVRTPHTPEHLTDIKP
LQLQMRASALGEQVPEMEVHFSSDGRWQYDADYHHMASLLERVGAPGVTA
AWHQLDAQQIQQKIQTLRRDASEKDDGWDAHDGRYDAFLGVRKSVERSDG
RPQGEPAMCPSAVSKCMSIGTDIALNSQLARRHKAPFHAIEDAQRVVQLV
TESVDELATLSVQQRSARVKAYHVLGSNAAKLWSVQSSMQDASQERLQVV
AESERRGGMSHVMQRALLGDNGLVDVDDLRVNGAYVALGMCVDSVGCSSA
MAWLSGAEQIATDGRER*

mRNA from alignment at tig00000900_pilon:322127..323380+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2113.t2 ID=Ggra2113.t2|Name=Ggra2113.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1254bp|location=Sequence derived from alignment at tig00000900_pilon:322127..323380+ (Gracilaria gracilis GNS1m male)
ATGCCCGCCGCCCATGCCTTTGTGCGCCACTCGCTGCTGCACGACGTTCG
CATGGTGCAAAACGCCAACATGGAGGTGCCCCACTTCCAGCACAAGCTGG
CCAGCGAGCTCACTGCGCTGCTCAAGCAGCCCATATCGTTCGTGGCCTCG
CGCAAGCGCACCGCGCGCTCGCTCATGCAGCACATCAACTGCTTCGAACC
GCTGCAGTGCGAGATTCTAGACCTGCAGCGCAGCCGCGCCGAGCGCCGCG
AACACGACCTGTTTTACTGCGCCGTGGCCGTTCGGAAGCGAGATGAGCTG
CCTCAACCTTTTCATGAGCGCGACTTTGTTTGCGTCGCGTCGCACTTTTC
GGTCGAGACTGCGCGCATCGCTGCGTTGGAGCAGGCCATTGACATAATCA
ACGCCGTCAGAACGCCGCACACTCCCGAGCACCTGACGGATATCAAACCG
CTGCAGCTGCAGATGCGTGCGAGTGCGTTGGGCGAGCAGGTGCCAGAGAT
GGAGGTGCACTTCTCGAGCGACGGACGTTGGCAGTATGATGCAGATTACC
ATCACATGGCCAGCCTTCTTGAGCGTGTAGGCGCGCCCGGTGTCACTGCC
GCATGGCACCAGCTAGACGCGCAGCAGATTCAACAAAAAATCCAAACGCT
GCGACGAGACGCAAGCGAAAAAGACGACGGCTGGGACGCGCATGATGGCC
GATATGATGCCTTTCTTGGTGTTCGTAAAAGCGTCGAGCGCAGCGATGGT
AGACCTCAAGGTGAACCCGCCATGTGTCCGTCCGCTGTGTCAAAGTGCAT
GTCTATAGGAACTGATATTGCGCTCAACAGCCAACTGGCTCGTCGTCACA
AAGCGCCGTTCCATGCCATTGAGGATGCGCAACGGGTTGTGCAACTGGTT
ACGGAGTCGGTGGATGAACTTGCTACACTTTCAGTGCAGCAGCGAAGCGC
CAGGGTGAAGGCATATCATGTGCTGGGTAGTAACGCCGCCAAGCTGTGGA
GTGTGCAGAGCAGCATGCAAGACGCCAGTCAGGAACGGTTGCAAGTTGTG
GCTGAGAGTGAGCGCAGAGGAGGCATGTCACACGTTATGCAGCGCGCTTT
GCTTGGTGACAACGGACTGGTGGATGTCGATGACTTGAGAGTGAATGGCG
CCTATGTGGCCCTTGGAATGTGTGTCGATTCTGTTGGCTGCTCGTCCGCC
ATGGCGTGGTTGTCCGGTGCCGAACAAATTGCTACCGACGGCCGTGAGCG
ATAG

Coding sequence (CDS) from alignment at tig00000900_pilon:322127..323380+

>Ggra2113.t2 ID=Ggra2113.t2|Name=Ggra2113.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1254bp|location=Sequence derived from alignment at tig00000900_pilon:322127..323380+ (Gracilaria gracilis GNS1m male)
ATGCCCGCCGCCCATGCCTTTGTGCGCCACTCGCTGCTGCACGACGTTCG
CATGGTGCAAAACGCCAACATGGAGGTGCCCCACTTCCAGCACAAGCTGG
CCAGCGAGCTCACTGCGCTGCTCAAGCAGCCCATATCGTTCGTGGCCTCG
CGCAAGCGCACCGCGCGCTCGCTCATGCAGCACATCAACTGCTTCGAACC
GCTGCAGTGCGAGATTCTAGACCTGCAGCGCAGCCGCGCCGAGCGCCGCG
AACACGACCTGTTTTACTGCGCCGTGGCCGTTCGGAAGCGAGATGAGCTG
CCTCAACCTTTTCATGAGCGCGACTTTGTTTGCGTCGCGTCGCACTTTTC
GGTCGAGACTGCGCGCATCGCTGCGTTGGAGCAGGCCATTGACATAATCA
ACGCCGTCAGAACGCCGCACACTCCCGAGCACCTGACGGATATCAAACCG
CTGCAGCTGCAGATGCGTGCGAGTGCGTTGGGCGAGCAGGTGCCAGAGAT
GGAGGTGCACTTCTCGAGCGACGGACGTTGGCAGTATGATGCAGATTACC
ATCACATGGCCAGCCTTCTTGAGCGTGTAGGCGCGCCCGGTGTCACTGCC
GCATGGCACCAGCTAGACGCGCAGCAGATTCAACAAAAAATCCAAACGCT
GCGACGAGACGCAAGCGAAAAAGACGACGGCTGGGACGCGCATGATGGCC
GATATGATGCCTTTCTTGGTGTTCGTAAAAGCGTCGAGCGCAGCGATGGT
AGACCTCAAGGTGAACCCGCCATGTGTCCGTCCGCTGTGTCAAAGTGCAT
GTCTATAGGAACTGATATTGCGCTCAACAGCCAACTGGCTCGTCGTCACA
AAGCGCCGTTCCATGCCATTGAGGATGCGCAACGGGTTGTGCAACTGGTT
ACGGAGTCGGTGGATGAACTTGCTACACTTTCAGTGCAGCAGCGAAGCGC
CAGGGTGAAGGCATATCATGTGCTGGGTAGTAACGCCGCCAAGCTGTGGA
GTGTGCAGAGCAGCATGCAAGACGCCAGTCAGGAACGGTTGCAAGTTGTG
GCTGAGAGTGAGCGCAGAGGAGGCATGTCACACGTTATGCAGCGCGCTTT
GCTTGGTGACAACGGACTGGTGGATGTCGATGACTTGAGAGTGAATGGCG
CCTATGTGGCCCTTGGAATGTGTGTCGATTCTGTTGGCTGCTCGTCCGCC
ATGGCGTGGTTGTCCGGTGCCGAACAAATTGCTACCGACGGCCGTGAGCG
ATAG