Ggra2110.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2110.t1
Unique NameGgra2110.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length263
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:314688..315607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2110Ggra2110Gracilaria gracilis GNS1m malegenetig00000900_pilon 314688..315607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2110.t1Ggra2110.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 314688..315607 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2110.t1.start1Ggra2110.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 314688..314690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2110.t1.CDS1Ggra2110.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 314688..314765 +
Ggra2110.t1.CDS2Ggra2110.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000900_pilon 314897..315607 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2110.t1.exon1Ggra2110.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 314688..314765 +
Ggra2110.t1.exon2Ggra2110.t1.exon2Gracilaria gracilis GNS1m maleexontig00000900_pilon 314897..315607 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2110.t1.intron1Ggra2110.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000900_pilon 314766..314896 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2110.t1.stop1Ggra2110.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 315605..315607 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2110.t1 ID=Ggra2110.t1|Name=Ggra2110.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=263bp
MAVDLTPAFQVTLYLVFLESLLFFAVIMQAKSVEPGTHSGVARYFGTVFL
FQACASLFLGLSEQTYEGYFSLYLAVMCVICIIVAVGFCIPAAVVVAVPE
PNKHSRQAVAYVLAISNVLLSSFFFSSQLNATPDIPYINRLLRRELLGAI
IGAIFVLAVACLVRMARRLKGRNGAYILLSGLVLMVIFGLLWAYLEPLCR
VSSPEEQWPSNCPMPKMFDHNFMITMFIVIANVLTAEGVLRLMAAGTGVE
DYVEIIPIINTT*
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spliced messenger RNA

>Ggra2110.t1 ID=Ggra2110.t1|Name=Ggra2110.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=789bp|location=Sequence derived from alignment at tig00000900_pilon:314688..315607+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGTGGATCTCACCCCCGCCTTTCAGGTCACGCTGTACCTCGTGTT
CCTAGAGAGCCTGTTGTTCTTCGCGGTTATCATGCAAGCAAAGTCGGTGG
AACCAGGAACGCACTCGGGCGTGGCGCGTTACTTTGGCACCGTGTTTCTG
TTCCAGGCGTGCGCATCGCTGTTCCTGGGGCTGTCCGAGCAGACGTACGA
GGGCTATTTTTCGCTGTATCTGGCGGTGATGTGCGTGATTTGCATCATTG
TGGCGGTTGGCTTTTGCATCCCGGCCGCCGTGGTGGTGGCCGTGCCGGAG
CCCAACAAGCACAGCCGGCAGGCGGTTGCGTACGTGCTGGCCATCTCCAA
CGTGCTGCTGTCGTCGTTTTTCTTCTCGTCGCAGCTCAACGCCACGCCGG
ACATCCCTTACATCAACCGGCTGCTGCGGCGCGAACTGCTCGGCGCCATC
ATTGGCGCCATCTTCGTGCTGGCCGTAGCGTGCTTGGTGCGTATGGCGCG
CAGGCTGAAAGGAAGAAACGGCGCGTATATTCTGCTGTCCGGGTTGGTGC
TCATGGTGATTTTCGGCTTGCTTTGGGCGTACCTGGAACCTCTTTGTCGC
GTGTCGTCTCCGGAAGAACAATGGCCGTCCAACTGCCCAATGCCAAAGAT
GTTCGATCACAACTTTATGATCACTATGTTCATCGTGATCGCTAACGTGC
TCACGGCCGAGGGCGTGTTGAGATTGATGGCGGCCGGCACGGGCGTGGAA
GACTATGTAGAGATCATTCCTATCATCAACACAACATAG
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protein sequence of Ggra2110.t1

>Ggra2110.t1 ID=Ggra2110.t1|Name=Ggra2110.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=263bp
MAVDLTPAFQVTLYLVFLESLLFFAVIMQAKSVEPGTHSGVARYFGTVFL
FQACASLFLGLSEQTYEGYFSLYLAVMCVICIIVAVGFCIPAAVVVAVPE
PNKHSRQAVAYVLAISNVLLSSFFFSSQLNATPDIPYINRLLRRELLGAI
IGAIFVLAVACLVRMARRLKGRNGAYILLSGLVLMVIFGLLWAYLEPLCR
VSSPEEQWPSNCPMPKMFDHNFMITMFIVIANVLTAEGVLRLMAAGTGVE
DYVEIIPIINTT*
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mRNA from alignment at tig00000900_pilon:314688..315607+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2110.t1 ID=Ggra2110.t1|Name=Ggra2110.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=920bp|location=Sequence derived from alignment at tig00000900_pilon:314688..315607+ (Gracilaria gracilis GNS1m male)
ATGGCCGTGGATCTCACCCCCGCCTTTCAGGTCACGCTGTACCTCGTGTT
CCTAGAGAGCCTGTTGTTCTTCGCGGTTGTAAGTACACGCCCAATCTGCC
CAATGCGCCGCCATGGCCCCCAAGCGCGCGCACGCTCGCGCTAATAATGG
CCGCCCGACTCACCGCCCTCATTTGCACCGCGTCCATCGCCGCGCGCGCG
CCGCCACAGATCATGCAAGCAAAGTCGGTGGAACCAGGAACGCACTCGGG
CGTGGCGCGTTACTTTGGCACCGTGTTTCTGTTCCAGGCGTGCGCATCGC
TGTTCCTGGGGCTGTCCGAGCAGACGTACGAGGGCTATTTTTCGCTGTAT
CTGGCGGTGATGTGCGTGATTTGCATCATTGTGGCGGTTGGCTTTTGCAT
CCCGGCCGCCGTGGTGGTGGCCGTGCCGGAGCCCAACAAGCACAGCCGGC
AGGCGGTTGCGTACGTGCTGGCCATCTCCAACGTGCTGCTGTCGTCGTTT
TTCTTCTCGTCGCAGCTCAACGCCACGCCGGACATCCCTTACATCAACCG
GCTGCTGCGGCGCGAACTGCTCGGCGCCATCATTGGCGCCATCTTCGTGC
TGGCCGTAGCGTGCTTGGTGCGTATGGCGCGCAGGCTGAAAGGAAGAAAC
GGCGCGTATATTCTGCTGTCCGGGTTGGTGCTCATGGTGATTTTCGGCTT
GCTTTGGGCGTACCTGGAACCTCTTTGTCGCGTGTCGTCTCCGGAAGAAC
AATGGCCGTCCAACTGCCCAATGCCAAAGATGTTCGATCACAACTTTATG
ATCACTATGTTCATCGTGATCGCTAACGTGCTCACGGCCGAGGGCGTGTT
GAGATTGATGGCGGCCGGCACGGGCGTGGAAGACTATGTAGAGATCATTC
CTATCATCAACACAACATAG
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Coding sequence (CDS) from alignment at tig00000900_pilon:314688..315607+

>Ggra2110.t1 ID=Ggra2110.t1|Name=Ggra2110.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=789bp|location=Sequence derived from alignment at tig00000900_pilon:314688..315607+ (Gracilaria gracilis GNS1m male)
ATGGCCGTGGATCTCACCCCCGCCTTTCAGGTCACGCTGTACCTCGTGTT
CCTAGAGAGCCTGTTGTTCTTCGCGGTTATCATGCAAGCAAAGTCGGTGG
AACCAGGAACGCACTCGGGCGTGGCGCGTTACTTTGGCACCGTGTTTCTG
TTCCAGGCGTGCGCATCGCTGTTCCTGGGGCTGTCCGAGCAGACGTACGA
GGGCTATTTTTCGCTGTATCTGGCGGTGATGTGCGTGATTTGCATCATTG
TGGCGGTTGGCTTTTGCATCCCGGCCGCCGTGGTGGTGGCCGTGCCGGAG
CCCAACAAGCACAGCCGGCAGGCGGTTGCGTACGTGCTGGCCATCTCCAA
CGTGCTGCTGTCGTCGTTTTTCTTCTCGTCGCAGCTCAACGCCACGCCGG
ACATCCCTTACATCAACCGGCTGCTGCGGCGCGAACTGCTCGGCGCCATC
ATTGGCGCCATCTTCGTGCTGGCCGTAGCGTGCTTGGTGCGTATGGCGCG
CAGGCTGAAAGGAAGAAACGGCGCGTATATTCTGCTGTCCGGGTTGGTGC
TCATGGTGATTTTCGGCTTGCTTTGGGCGTACCTGGAACCTCTTTGTCGC
GTGTCGTCTCCGGAAGAACAATGGCCGTCCAACTGCCCAATGCCAAAGAT
GTTCGATCACAACTTTATGATCACTATGTTCATCGTGATCGCTAACGTGC
TCACGGCCGAGGGCGTGTTGAGATTGATGGCGGCCGGCACGGGCGTGGAA
GACTATGTAGAGATCATTCCTATCATCAACACAACATAG
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