Ggra2105.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2105.t1
Unique NameGgra2105.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length468
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:302673..304076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6669.EFX84588
Preferred nameNAE1
PFAMsThiF
Max annot lvl33208|Metazoa
KEGG koko:K04532
KEGG Pathwayko05010,map05010
GOsGO:0000075,GO:0000076,GO:0000278,GO:0001540,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0006915,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0008219,GO:0008641,GO:0009966,GO:0009968,GO:0009987,GO:0010389,GO:0010564,GO:0010646,GO:0010648,GO:0010941,GO:0010948,GO:0010972,GO:0012501,GO:0016874,GO:0016877,GO:0019538,GO:0019781,GO:0019899,GO:0022402,GO:0023051,GO:0023052,GO:0023057,GO:0031570,GO:0031625,GO:0032446,GO:0032991,GO:0033218,GO:0033314,GO:0036211,GO:0042277,GO:0042981,GO:0043067,GO:0043170,GO:0043412,GO:0043516,GO:0043518,GO:0043523,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0044774,GO:0044818,GO:0045116,GO:0045786,GO:0045930,GO:0046982,GO:0046983,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051402,GO:0051716,GO:0051726,GO:0065007,GO:0070647,GO:0070997,GO:0071704,GO:0080134,GO:0080135,GO:1901214,GO:1901564,GO:1901796,GO:1901797,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902531,GO:1902532,GO:1902749,GO:1902750,GO:1903047,GO:2001020,GO:2001021
Evalue9.23e-62
EggNOG OGsCOG0476@1|root,KOG2016@2759|Eukaryota,38CHG@33154|Opisthokonta,3BGZ3@33208|Metazoa,3CZGJ@33213|Bilateria,41TJ4@6656|Arthropoda
DescriptionNEDD8-activating enzyme E1 regulatory
COG categoryO
BRITEko00000,ko00001,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2105Ggra2105Gracilaria gracilis GNS1m malegenetig00000900_pilon 302673..304076 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2105.t1.start1Ggra2105.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 302673..302675 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2105.t1.CDS1Ggra2105.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 302673..304076 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2105.t1.exon1Ggra2105.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 302673..304076 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2105.t1.stop1Ggra2105.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 304074..304076 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2105.t1Ggra2105.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 302673..304076 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2105.t1 ID=Ggra2105.t1|Name=Ggra2105.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=468bp
MPATHPVVHYLSDACFRANIPFVLLRCYGMIGYLRIQSPMLCILNSRHDD
LPPDLCVHQPFPQLRRLADATHLHSMSDTTQLSHVPFVIILTKAVQLFRS
RNNNQLPETTQQKQLFKQIVHSLRPAHCPSTAQNFEEALKPSNLRLCYAH
TNRIPPNVRAVLSHPNSNAQTSNAFSVHIEQPQPHVFPEVMHYSKHQNRP
YKSLDDDERQTTTSHPSDLRAATTIAQQQARFWLLAAALRQFVQECARLP
VRGSLPDMTADTESYIALQRMYSDKADNDAKRVFHFVQRIAEERAVDLDI
GEAFVKSFCKSVHSIRVMSTKSIKEELNGWNLDAFKEAAMLEGGLDASTS
GKASPYYAILRAVDKFHRQNGRYPGSDAVVKENDLALVHGYVSEIKEQLG
LQSNSGLWRDETEEMVRYANAELHNVAAFMGGIAAQEITKIITQQFVPLD
NTLVVNMAEQSSTSFAV*
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spliced messenger RNA

>Ggra2105.t1 ID=Ggra2105.t1|Name=Ggra2105.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1404bp|location=Sequence derived from alignment at tig00000900_pilon:302673..304076+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgcccgccacccaccccgtcgTGCACTATCTGTCCGATGCCTGCTTCCG
CGCCAACATCCCGTTTGTGTTGCTGCGCTGTTATGGCATGATCGGCTATC
TGCGCATTCAGAGCCCCATGCTGTGCATCCTCAACTCCAGACACGATGAC
CTGCCCCCGGATCTGTGCGTGCACCAACCGTTCCCACAGCTGCGCCGTCT
GGCAGATGCCACTCATCTGCATTCCATGTCCGACACCACTCAGCTATCAC
ACGTCCCCTTCGTTATCATTCTCACTAAAGCAGTGCAACTTTTCCGATCG
CGCAACAACAATCAACTGCCCGAAACAACTCAACAAAAGCAACTCTTCAA
GCAAATTGTGCACTCACTGCGCCCTGCTCATTGTCCGTCAACAGCCCAAA
ACTTTGAAGAAGCACTCAAGCCCTCCAACCTGCGACTCTGCTACGCTCAC
ACCAACCGCATTCCGCCCAACGTTCGCGCTGTACTCTCACACCCGAATAG
CAATGCGCAGACGTCAAACGCCTTTTCCGTCCACATTGAGCAACCCCAAC
CTCACGTCTTTCCGGAAGTCATGCACTACTCCAAACACCAAAACAGGCCT
TACAAGTCTTTGGACGACGATGAAAGGCAAACAACCACGTCCCACCCGTC
TGACCTTCGTGCCGCCACTACCATCGCGCAACAGCAAGCTCGATTCTGGT
TGCTTGCGGCTGCGCTTCGTCAATTTGTTCAGGAATGTGCACGTCTACCA
GTGCGTGGTTCCTTGCCCGATATGACCGCCGACACCGAGTCGTACATTGC
ATTACAACGCATGTATTCAGACAAGGCTGATAACGATGCCAAACGTGTAT
TTCACTTTGTGCAACGTATTGCCGAGGAACGCGCTGTTGACTTGGATATT
GGCGAAGCTTTTGTCAAGTCATTTTGTAAAAGCGTGCACTCCATACGCGT
CATGTCCACTAAAAGCATCAAGGAAGAACTCAATGGATGGAACCTAGACG
CTTTCAAAGAGGCCGCAATGTTAGAGGGTGGCTTGGATGCCAGCACAAGC
GGCAAGGCCTCTCCGTATTACGCCATACTTCGAGCGGTGGACAAATTTCA
CCGACAGAATGGACGCTACCCTGGCAGCGATGCTGTCGTCAAAGAGAACG
ACCTGGCGCTTGTGCATGGCTACGTTTCTGAAATCAAGGAACAGCTTGGC
CTTCAGTCAAACAGTGGTCTTTGGAGGGATGAAACGGAAGAAATGGTGCG
CTATGCAAACGCAGAGCTCCATAATGTCGCGGCCTTCATGGGTGGAATTG
CAGCTCAAGAAATAACCAAGATTATCACTCAGCAGTTTGTTCCACTCGAC
AACACACTTGTCGTGAACATGGCTGAGCAAAGTAGCACGAGTTTTGCTGT
GTGA
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protein sequence of Ggra2105.t1

>Ggra2105.t1 ID=Ggra2105.t1|Name=Ggra2105.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=468bp
MPATHPVVHYLSDACFRANIPFVLLRCYGMIGYLRIQSPMLCILNSRHDD
LPPDLCVHQPFPQLRRLADATHLHSMSDTTQLSHVPFVIILTKAVQLFRS
RNNNQLPETTQQKQLFKQIVHSLRPAHCPSTAQNFEEALKPSNLRLCYAH
TNRIPPNVRAVLSHPNSNAQTSNAFSVHIEQPQPHVFPEVMHYSKHQNRP
YKSLDDDERQTTTSHPSDLRAATTIAQQQARFWLLAAALRQFVQECARLP
VRGSLPDMTADTESYIALQRMYSDKADNDAKRVFHFVQRIAEERAVDLDI
GEAFVKSFCKSVHSIRVMSTKSIKEELNGWNLDAFKEAAMLEGGLDASTS
GKASPYYAILRAVDKFHRQNGRYPGSDAVVKENDLALVHGYVSEIKEQLG
LQSNSGLWRDETEEMVRYANAELHNVAAFMGGIAAQEITKIITQQFVPLD
NTLVVNMAEQSSTSFAV*
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mRNA from alignment at tig00000900_pilon:302673..304076+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2105.t1 ID=Ggra2105.t1|Name=Ggra2105.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1404bp|location=Sequence derived from alignment at tig00000900_pilon:302673..304076+ (Gracilaria gracilis GNS1m male)
atgcccgccacccaccccgtcgTGCACTATCTGTCCGATGCCTGCTTCCG
CGCCAACATCCCGTTTGTGTTGCTGCGCTGTTATGGCATGATCGGCTATC
TGCGCATTCAGAGCCCCATGCTGTGCATCCTCAACTCCAGACACGATGAC
CTGCCCCCGGATCTGTGCGTGCACCAACCGTTCCCACAGCTGCGCCGTCT
GGCAGATGCCACTCATCTGCATTCCATGTCCGACACCACTCAGCTATCAC
ACGTCCCCTTCGTTATCATTCTCACTAAAGCAGTGCAACTTTTCCGATCG
CGCAACAACAATCAACTGCCCGAAACAACTCAACAAAAGCAACTCTTCAA
GCAAATTGTGCACTCACTGCGCCCTGCTCATTGTCCGTCAACAGCCCAAA
ACTTTGAAGAAGCACTCAAGCCCTCCAACCTGCGACTCTGCTACGCTCAC
ACCAACCGCATTCCGCCCAACGTTCGCGCTGTACTCTCACACCCGAATAG
CAATGCGCAGACGTCAAACGCCTTTTCCGTCCACATTGAGCAACCCCAAC
CTCACGTCTTTCCGGAAGTCATGCACTACTCCAAACACCAAAACAGGCCT
TACAAGTCTTTGGACGACGATGAAAGGCAAACAACCACGTCCCACCCGTC
TGACCTTCGTGCCGCCACTACCATCGCGCAACAGCAAGCTCGATTCTGGT
TGCTTGCGGCTGCGCTTCGTCAATTTGTTCAGGAATGTGCACGTCTACCA
GTGCGTGGTTCCTTGCCCGATATGACCGCCGACACCGAGTCGTACATTGC
ATTACAACGCATGTATTCAGACAAGGCTGATAACGATGCCAAACGTGTAT
TTCACTTTGTGCAACGTATTGCCGAGGAACGCGCTGTTGACTTGGATATT
GGCGAAGCTTTTGTCAAGTCATTTTGTAAAAGCGTGCACTCCATACGCGT
CATGTCCACTAAAAGCATCAAGGAAGAACTCAATGGATGGAACCTAGACG
CTTTCAAAGAGGCCGCAATGTTAGAGGGTGGCTTGGATGCCAGCACAAGC
GGCAAGGCCTCTCCGTATTACGCCATACTTCGAGCGGTGGACAAATTTCA
CCGACAGAATGGACGCTACCCTGGCAGCGATGCTGTCGTCAAAGAGAACG
ACCTGGCGCTTGTGCATGGCTACGTTTCTGAAATCAAGGAACAGCTTGGC
CTTCAGTCAAACAGTGGTCTTTGGAGGGATGAAACGGAAGAAATGGTGCG
CTATGCAAACGCAGAGCTCCATAATGTCGCGGCCTTCATGGGTGGAATTG
CAGCTCAAGAAATAACCAAGATTATCACTCAGCAGTTTGTTCCACTCGAC
AACACACTTGTCGTGAACATGGCTGAGCAAAGTAGCACGAGTTTTGCTGT
GTGA
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Coding sequence (CDS) from alignment at tig00000900_pilon:302673..304076+

>Ggra2105.t1 ID=Ggra2105.t1|Name=Ggra2105.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1404bp|location=Sequence derived from alignment at tig00000900_pilon:302673..304076+ (Gracilaria gracilis GNS1m male)
atgcccgccacccaccccgtcgTGCACTATCTGTCCGATGCCTGCTTCCG
CGCCAACATCCCGTTTGTGTTGCTGCGCTGTTATGGCATGATCGGCTATC
TGCGCATTCAGAGCCCCATGCTGTGCATCCTCAACTCCAGACACGATGAC
CTGCCCCCGGATCTGTGCGTGCACCAACCGTTCCCACAGCTGCGCCGTCT
GGCAGATGCCACTCATCTGCATTCCATGTCCGACACCACTCAGCTATCAC
ACGTCCCCTTCGTTATCATTCTCACTAAAGCAGTGCAACTTTTCCGATCG
CGCAACAACAATCAACTGCCCGAAACAACTCAACAAAAGCAACTCTTCAA
GCAAATTGTGCACTCACTGCGCCCTGCTCATTGTCCGTCAACAGCCCAAA
ACTTTGAAGAAGCACTCAAGCCCTCCAACCTGCGACTCTGCTACGCTCAC
ACCAACCGCATTCCGCCCAACGTTCGCGCTGTACTCTCACACCCGAATAG
CAATGCGCAGACGTCAAACGCCTTTTCCGTCCACATTGAGCAACCCCAAC
CTCACGTCTTTCCGGAAGTCATGCACTACTCCAAACACCAAAACAGGCCT
TACAAGTCTTTGGACGACGATGAAAGGCAAACAACCACGTCCCACCCGTC
TGACCTTCGTGCCGCCACTACCATCGCGCAACAGCAAGCTCGATTCTGGT
TGCTTGCGGCTGCGCTTCGTCAATTTGTTCAGGAATGTGCACGTCTACCA
GTGCGTGGTTCCTTGCCCGATATGACCGCCGACACCGAGTCGTACATTGC
ATTACAACGCATGTATTCAGACAAGGCTGATAACGATGCCAAACGTGTAT
TTCACTTTGTGCAACGTATTGCCGAGGAACGCGCTGTTGACTTGGATATT
GGCGAAGCTTTTGTCAAGTCATTTTGTAAAAGCGTGCACTCCATACGCGT
CATGTCCACTAAAAGCATCAAGGAAGAACTCAATGGATGGAACCTAGACG
CTTTCAAAGAGGCCGCAATGTTAGAGGGTGGCTTGGATGCCAGCACAAGC
GGCAAGGCCTCTCCGTATTACGCCATACTTCGAGCGGTGGACAAATTTCA
CCGACAGAATGGACGCTACCCTGGCAGCGATGCTGTCGTCAAAGAGAACG
ACCTGGCGCTTGTGCATGGCTACGTTTCTGAAATCAAGGAACAGCTTGGC
CTTCAGTCAAACAGTGGTCTTTGGAGGGATGAAACGGAAGAAATGGTGCG
CTATGCAAACGCAGAGCTCCATAATGTCGCGGCCTTCATGGGTGGAATTG
CAGCTCAAGAAATAACCAAGATTATCACTCAGCAGTTTGTTCCACTCGAC
AACACACTTGTCGTGAACATGGCTGAGCAAAGTAGCACGAGTTTTGCTGT
GTGA
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