Ggra2100.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2100.t1
Unique NameGgra2100.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length102
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:284439..284820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2100Ggra2100Gracilaria gracilis GNS1m malegenetig00000900_pilon 284439..284820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2100.t1Ggra2100.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 284439..284820 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2100.t1.start1Ggra2100.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 284439..284441 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2100.t1.CDS1Ggra2100.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 284439..284661 +
Ggra2100.t1.CDS2Ggra2100.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000900_pilon 284738..284820 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2100.t1.exon1Ggra2100.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 284439..284661 +
Ggra2100.t1.exon2Ggra2100.t1.exon2Gracilaria gracilis GNS1m maleexontig00000900_pilon 284738..284820 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2100.t1.intron1Ggra2100.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000900_pilon 284662..284737 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2100.t1.stop1Ggra2100.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 284818..284820 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2100.t1 ID=Ggra2100.t1|Name=Ggra2100.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=102bp
MQASVDLQRAQSDTEFRKLSRSEREKQLFDDVLDSVEKCKKARESNDEEV
QRMGELLLERKKQAFRRFMESGAEGVPSYVIVVLEMLSRNAPGGGGNDHL
P*
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spliced messenger RNA

>Ggra2100.t1 ID=Ggra2100.t1|Name=Ggra2100.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=306bp|location=Sequence derived from alignment at tig00000900_pilon:284439..284820+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgcaggcctcagttgatttgcagagggcacagagcGACACGGAGTTCAG
AAAGCTGTCCAGATCTGAAAGGGAGAAGCAACTGTTTGACGATGTGTTGG
ACAGCGTAGAGAAGTGCAAGAAAGCGAGAGAAAGTAATGACGAGGAGGTC
CAGCGCATGGGTGAGCTTCTCTTGGAACGAAAGAAGCAGGCCTTTAGGAG
ATTCATGGAATCAGGAGCTGAAGGCGTACCATCATATGTGATCGTGGTGC
TTGAAATGCTTTCAAGAAATGCACCGGGTGGTGGTGGGAACGATCACCTT
CCGTAG
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protein sequence of Ggra2100.t1

>Ggra2100.t1 ID=Ggra2100.t1|Name=Ggra2100.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=102bp
MQASVDLQRAQSDTEFRKLSRSEREKQLFDDVLDSVEKCKKARESNDEEV
QRMGELLLERKKQAFRRFMESGAEGVPSYVIVVLEMLSRNAPGGGGNDHL
P*
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mRNA from alignment at tig00000900_pilon:284439..284820+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2100.t1 ID=Ggra2100.t1|Name=Ggra2100.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=382bp|location=Sequence derived from alignment at tig00000900_pilon:284439..284820+ (Gracilaria gracilis GNS1m male)
atgcaggcctcagttgatttgcagagggcacagagcGACACGGAGTTCAG
AAAGCTGTCCAGATCTGAAAGGGAGAAGCAACTGTTTGACGATGTGTTGG
ACAGCGTAGAGAAGTGCAAGAAAGCGAGAGAAAGTAATGACGAGGAGGTC
CAGCGCATGGGTGAGCTTCTCTTGGAACGAAAGAAGCAGGCCTTTAGGAG
ATTCATGGAATCAGGAGCTGAAGGTAAGGAGAGCTGAAGGAGTCTAAGAA
TATGAAGCTAACCTTTCCGGTTTTACGTTTTCTGTGTTTATCTGTCTAGG
CGTACCATCATATGTGATCGTGGTGCTTGAAATGCTTTCAAGAAATGCAC
CGGGTGGTGGTGGGAACGATCACCTTCCGTAG
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Coding sequence (CDS) from alignment at tig00000900_pilon:284439..284820+

>Ggra2100.t1 ID=Ggra2100.t1|Name=Ggra2100.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=306bp|location=Sequence derived from alignment at tig00000900_pilon:284439..284820+ (Gracilaria gracilis GNS1m male)
atgcaggcctcagttgatttgcagagggcacagagcGACACGGAGTTCAG
AAAGCTGTCCAGATCTGAAAGGGAGAAGCAACTGTTTGACGATGTGTTGG
ACAGCGTAGAGAAGTGCAAGAAAGCGAGAGAAAGTAATGACGAGGAGGTC
CAGCGCATGGGTGAGCTTCTCTTGGAACGAAAGAAGCAGGCCTTTAGGAG
ATTCATGGAATCAGGAGCTGAAGGCGTACCATCATATGTGATCGTGGTGC
TTGAAATGCTTTCAAGAAATGCACCGGGTGGTGGTGGGAACGATCACCTT
CCGTAG
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