Ggra2097.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2097.t1
Unique Name	Ggra2097.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	683

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:258607..260744 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	46681.XP_001733663.1
PFAMs	LRR_5
Max annot lvl	2759\|Eukaryota
Evalue	5.23e-06
EggNOG OGs	28T7T@1\|root,2QZY2@2759\|Eukaryota
Description	protein kinase A regulatory subunit binding
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2097	Ggra2097	Gracilaria gracilis GNS1m male	gene	tig00000900_pilon 258607..260744 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2097.t1	Ggra2097.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000900_pilon 258607..260744 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2097.t1.start1	Ggra2097.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000900_pilon 258607..258609 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2097.t1.CDS1	Ggra2097.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 258607..259343 +
Ggra2097.t1.CDS2	Ggra2097.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 259433..260744 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2097.t1.exon1	Ggra2097.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 258607..259343 +
Ggra2097.t1.exon2	Ggra2097.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 259433..260744 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2097.t1.intron1	Ggra2097.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000900_pilon 259344..259432 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2097.t1.stop1	Ggra2097.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000900_pilon 260742..260744 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000900_pilon:258607..260744+
coding sequence from alignment at tig00000900_pilon:258607..260744+

mRNA sequence

>Ggra2097.t1 ID=Ggra2097.t1|Name=Ggra2097.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=683bp
MALLDGVIVELIAKGMLMVAGPLYDDKTEAVTATQDQLGKMSGVMERLQR
KSDEDLDDLREKLGEVYESIVKPEMKELKEKLWQSMKDEEDDTNVRSRVV
EMAMVLYCLVRNTSIQQVALKVQKVIGLPSSSASRRSIVESETILVGNTT
TAKEIISNLLQMNENGLFRKVVHSSDDQMSINVDAAPRIGARREGLIKGT
GGLFKLCQTLCDVVQDERGVYAVSKGDSFAKSDKEPEHNACLITLHYYWP
TPVEFKEHEDFVIEAAKYLKEDSDVEEASFDEFTEAWEKKGAEMNIKNVY
LLGLTGQGKSTLANKLTGTDHFHVSDAGTGTERISGAIAEGGLLGSGSNV
MVWDTPGMDDQQGRDRIYESMLYQHLTRENTVSTIIIVSKDGSRFPTSLR
RTIAVYRQAFGDAFLSCVCVCVGLNENIESESVLQARQSFWEANLMRTFK
FSEEAVRRKVFFYDARSSRVQLSANRLKAFIISGRPHLTGTGVAILQGLK
RLQSAQLQDEEKRNMVRVSKEMFKALRTELQLFQRVRIRFSRDSQRLSEK
MTLHLLPNIEDRIVSFFRNRRKQREVVYDKVIQIVAKGKRAKQLLSFDYL
SHPEMGCHMKIKIFANYADTWDLVLANMGAKPVDTGWGKIQLQTYNLIHL
DDQLDKTVFDAVDKLLNVMAIDPKFVNAFARR*

spliced messenger RNA

>Ggra2097.t1 ID=Ggra2097.t1|Name=Ggra2097.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2049bp|location=Sequence derived from alignment at tig00000900_pilon:258607..260744+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTGCTAGATGGTGTAATTGTTGAACTCATTGCGAAGGGAATGCT
AATGGTCGCCGGTCCCCTTTATGATGACAAGACAGAAGCAGTCACGGCCA
CGCAAGACCAGTTGGGTAAAATGAGTGGCGTAATGGAAAGGCTCCAGCGG
AAAAGCGATGAAGACTTGGACGATCTTAGGGAGAAGTTAGGTGAAGTGTA
TGAATCGATTGTAAAACCTGAAATGAAGGAACTAAAAGAGAAACTGTGGC
AATCAATGAAAGATGAAGAAGATGACACCAATGTCCGAAGCCGAGTGGTA
GAGATGGCTATGGTGCTGTATTGCCTTGTTCGCAATACATCCATTCAGCA
AGTCGCCCTGAAGGTACAGAAGGTAATTGGCTTGCCTTCGTCCTCAGCCT
CAAGGCGTTCAATAGTGGAGTCAGAAACGATTTTAGTCGGAAATACAACG
ACGGCCAAAGAGATTATTTCGAACTTGTTGCAAATGAATGAGAACGGTCT
TTTCCGCAAAGTTGTACATTCATCTGATGATCAAATGAGTATTAATGTGG
ATGCAGCGCCCCGAATCGGAGCTCGAAGAGAAGGTCTCATCAAAGGTACT
GGTGGACTATTCAAACTTTGTCAAACTCTGTGCGACGTCGTTCAGGATGA
GAGAGGTGTGTATGCTGTTTCAAAGGGTGATTCGTTCGCTAAAAGTGACA
AGGAACCGGAACACAATGCCTGCTTGATTACTTTACATTACTATTGGCCC
ACACCTGTCGAATTTAAAGAACATGAAGATTTCGTGATCGAGGCAGCTAA
GTATCTAAAAGAAGATTCAGATGTTGAAGAGGCGTCATTTGATGAGTTCA
CGGAAGCATGGGAGAAAAAAGGAGCTGAAATGAATATCAAGAATGTTTAT
CTGCTTGGGTTAACCGGGCAAGGGAAATCCACATTGGCAAACAAACTCAC
AGGTACGGACCACTTCCATGTCTCCGATGCGGGAACTGGAACAGAAAGAA
TATCAGGAGCTATCGCTGAAGGGGGACTCCTTGGATCAGGCAGCAACGTT
ATGGTCTGGGATACACCAGGAATGGACGACCAACAAGGTCGAGATCGTAT
ATATGAGAGTATGCTGTACCAACATTTAACTAGAGAAAACACTGTCTCTA
CTATCATAATTGTTTCTAAGGATGGGTCTCGGTTCCCGACATCCCTCAGA
CGCACAATTGCTGTATATCGGCAAGCTTTTGGAGATGCGTTTCTTTCCTG
TGTTTGCGTATGCGTCGGTCTCAACGAAAACATAGAGAGCGAGAGCGTGT
TACAGGCAAGACAAAGTTTTTGGGAAGCAAATTTGATGAGAACATTCAAG
TTCTCTGAAGAAGCTGTTCGGCGTAAGGTGTTCTTCTATGATGCAAGAAG
TTCAAGAGTGCAACTAAGTGCTAACAGACTGAAAGCTTTCATAATTAGTG
GGAGACCCCATTTGACAGGAACTGGTGTCGCTATTCTTCAAGGGCTCAAG
CGTCTACAAAGTGCTCAATTGCAAGACGAAGAAAAACGGAATATGGTTCG
TGTCTCTAAGGAAATGTTTAAAGCGCTTCGAACCGAGTTGCAGCTTTTTC
AAAGGGTGAGAATAAGGTTTTCTCGTGACTCGCAACGCTTATCTGAGAAG
ATGACACTTCATTTGCTTCCAAATATCGAGGATAGAATTGTTAGCTTTTT
TCGCAATCGCAGAAAACAACGGGAGGTTGTGTACGATAAGGTAATTCAAA
TTGTAGCGAAAGGAAAAAGGGCGAAGCAGCTTCTCTCCTTCGATTATCTC
TCGCATCCTGAAATGGGCTGTCATATGAAGATAAAGATATTTGCCAACTA
TGCCGATACTTGGGACTTGGTTCTTGCCAACATGGGTGCAAAGCCTGTCG
ATACTGGATGGGGGAAGATTCAACTTCAAACATATAACCTCATACACTTG
GACGATCAGCTCGATAAGACCGTTTTCGACGCAGTAGACAAACTATTGAA
CGTGATGGCTATTGATCCGAAGTTTGTTAACGCTTTCGCAAGAAGATAA

protein sequence of Ggra2097.t1

>Ggra2097.t1 ID=Ggra2097.t1|Name=Ggra2097.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=683bp
MALLDGVIVELIAKGMLMVAGPLYDDKTEAVTATQDQLGKMSGVMERLQR
KSDEDLDDLREKLGEVYESIVKPEMKELKEKLWQSMKDEEDDTNVRSRVV
EMAMVLYCLVRNTSIQQVALKVQKVIGLPSSSASRRSIVESETILVGNTT
TAKEIISNLLQMNENGLFRKVVHSSDDQMSINVDAAPRIGARREGLIKGT
GGLFKLCQTLCDVVQDERGVYAVSKGDSFAKSDKEPEHNACLITLHYYWP
TPVEFKEHEDFVIEAAKYLKEDSDVEEASFDEFTEAWEKKGAEMNIKNVY
LLGLTGQGKSTLANKLTGTDHFHVSDAGTGTERISGAIAEGGLLGSGSNV
MVWDTPGMDDQQGRDRIYESMLYQHLTRENTVSTIIIVSKDGSRFPTSLR
RTIAVYRQAFGDAFLSCVCVCVGLNENIESESVLQARQSFWEANLMRTFK
FSEEAVRRKVFFYDARSSRVQLSANRLKAFIISGRPHLTGTGVAILQGLK
RLQSAQLQDEEKRNMVRVSKEMFKALRTELQLFQRVRIRFSRDSQRLSEK
MTLHLLPNIEDRIVSFFRNRRKQREVVYDKVIQIVAKGKRAKQLLSFDYL
SHPEMGCHMKIKIFANYADTWDLVLANMGAKPVDTGWGKIQLQTYNLIHL
DDQLDKTVFDAVDKLLNVMAIDPKFVNAFARR*

mRNA from alignment at tig00000900_pilon:258607..260744+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2097.t1 ID=Ggra2097.t1|Name=Ggra2097.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2138bp|location=Sequence derived from alignment at tig00000900_pilon:258607..260744+ (Gracilaria gracilis GNS1m male)
ATGGCTTTGCTAGATGGTGTAATTGTTGAACTCATTGCGAAGGGAATGCT
AATGGTCGCCGGTCCCCTTTATGATGACAAGACAGAAGCAGTCACGGCCA
CGCAAGACCAGTTGGGTAAAATGAGTGGCGTAATGGAAAGGCTCCAGCGG
AAAAGCGATGAAGACTTGGACGATCTTAGGGAGAAGTTAGGTGAAGTGTA
TGAATCGATTGTAAAACCTGAAATGAAGGAACTAAAAGAGAAACTGTGGC
AATCAATGAAAGATGAAGAAGATGACACCAATGTCCGAAGCCGAGTGGTA
GAGATGGCTATGGTGCTGTATTGCCTTGTTCGCAATACATCCATTCAGCA
AGTCGCCCTGAAGGTACAGAAGGTAATTGGCTTGCCTTCGTCCTCAGCCT
CAAGGCGTTCAATAGTGGAGTCAGAAACGATTTTAGTCGGAAATACAACG
ACGGCCAAAGAGATTATTTCGAACTTGTTGCAAATGAATGAGAACGGTCT
TTTCCGCAAAGTTGTACATTCATCTGATGATCAAATGAGTATTAATGTGG
ATGCAGCGCCCCGAATCGGAGCTCGAAGAGAAGGTCTCATCAAAGGTACT
GGTGGACTATTCAAACTTTGTCAAACTCTGTGCGACGTCGTTCAGGATGA
GAGAGGTGTGTATGCTGTTTCAAAGGGTGATTCGTTCGCTAAAAGTGACA
AGGAACCGGAACACAATGCCTGCTTGATTACTTTACAGTAGCTTCGAACA
AGTCTAACTATCCGCTTCTACAGAGTTCACAAACTGACAAATGAGAACTT
ACTGACTTCTCCTCTTTTGTTTCAAGTTACTATTGGCCCACACCTGTCGA
ATTTAAAGAACATGAAGATTTCGTGATCGAGGCAGCTAAGTATCTAAAAG
AAGATTCAGATGTTGAAGAGGCGTCATTTGATGAGTTCACGGAAGCATGG
GAGAAAAAAGGAGCTGAAATGAATATCAAGAATGTTTATCTGCTTGGGTT
AACCGGGCAAGGGAAATCCACATTGGCAAACAAACTCACAGGTACGGACC
ACTTCCATGTCTCCGATGCGGGAACTGGAACAGAAAGAATATCAGGAGCT
ATCGCTGAAGGGGGACTCCTTGGATCAGGCAGCAACGTTATGGTCTGGGA
TACACCAGGAATGGACGACCAACAAGGTCGAGATCGTATATATGAGAGTA
TGCTGTACCAACATTTAACTAGAGAAAACACTGTCTCTACTATCATAATT
GTTTCTAAGGATGGGTCTCGGTTCCCGACATCCCTCAGACGCACAATTGC
TGTATATCGGCAAGCTTTTGGAGATGCGTTTCTTTCCTGTGTTTGCGTAT
GCGTCGGTCTCAACGAAAACATAGAGAGCGAGAGCGTGTTACAGGCAAGA
CAAAGTTTTTGGGAAGCAAATTTGATGAGAACATTCAAGTTCTCTGAAGA
AGCTGTTCGGCGTAAGGTGTTCTTCTATGATGCAAGAAGTTCAAGAGTGC
AACTAAGTGCTAACAGACTGAAAGCTTTCATAATTAGTGGGAGACCCCAT
TTGACAGGAACTGGTGTCGCTATTCTTCAAGGGCTCAAGCGTCTACAAAG
TGCTCAATTGCAAGACGAAGAAAAACGGAATATGGTTCGTGTCTCTAAGG
AAATGTTTAAAGCGCTTCGAACCGAGTTGCAGCTTTTTCAAAGGGTGAGA
ATAAGGTTTTCTCGTGACTCGCAACGCTTATCTGAGAAGATGACACTTCA
TTTGCTTCCAAATATCGAGGATAGAATTGTTAGCTTTTTTCGCAATCGCA
GAAAACAACGGGAGGTTGTGTACGATAAGGTAATTCAAATTGTAGCGAAA
GGAAAAAGGGCGAAGCAGCTTCTCTCCTTCGATTATCTCTCGCATCCTGA
AATGGGCTGTCATATGAAGATAAAGATATTTGCCAACTATGCCGATACTT
GGGACTTGGTTCTTGCCAACATGGGTGCAAAGCCTGTCGATACTGGATGG
GGGAAGATTCAACTTCAAACATATAACCTCATACACTTGGACGATCAGCT
CGATAAGACCGTTTTCGACGCAGTAGACAAACTATTGAACGTGATGGCTA
TTGATCCGAAGTTTGTTAACGCTTTCGCAAGAAGATAA

Coding sequence (CDS) from alignment at tig00000900_pilon:258607..260744+

>Ggra2097.t1 ID=Ggra2097.t1|Name=Ggra2097.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2049bp|location=Sequence derived from alignment at tig00000900_pilon:258607..260744+ (Gracilaria gracilis GNS1m male)
ATGGCTTTGCTAGATGGTGTAATTGTTGAACTCATTGCGAAGGGAATGCT
AATGGTCGCCGGTCCCCTTTATGATGACAAGACAGAAGCAGTCACGGCCA
CGCAAGACCAGTTGGGTAAAATGAGTGGCGTAATGGAAAGGCTCCAGCGG
AAAAGCGATGAAGACTTGGACGATCTTAGGGAGAAGTTAGGTGAAGTGTA
TGAATCGATTGTAAAACCTGAAATGAAGGAACTAAAAGAGAAACTGTGGC
AATCAATGAAAGATGAAGAAGATGACACCAATGTCCGAAGCCGAGTGGTA
GAGATGGCTATGGTGCTGTATTGCCTTGTTCGCAATACATCCATTCAGCA
AGTCGCCCTGAAGGTACAGAAGGTAATTGGCTTGCCTTCGTCCTCAGCCT
CAAGGCGTTCAATAGTGGAGTCAGAAACGATTTTAGTCGGAAATACAACG
ACGGCCAAAGAGATTATTTCGAACTTGTTGCAAATGAATGAGAACGGTCT
TTTCCGCAAAGTTGTACATTCATCTGATGATCAAATGAGTATTAATGTGG
ATGCAGCGCCCCGAATCGGAGCTCGAAGAGAAGGTCTCATCAAAGGTACT
GGTGGACTATTCAAACTTTGTCAAACTCTGTGCGACGTCGTTCAGGATGA
GAGAGGTGTGTATGCTGTTTCAAAGGGTGATTCGTTCGCTAAAAGTGACA
AGGAACCGGAACACAATGCCTGCTTGATTACTTTACATTACTATTGGCCC
ACACCTGTCGAATTTAAAGAACATGAAGATTTCGTGATCGAGGCAGCTAA
GTATCTAAAAGAAGATTCAGATGTTGAAGAGGCGTCATTTGATGAGTTCA
CGGAAGCATGGGAGAAAAAAGGAGCTGAAATGAATATCAAGAATGTTTAT
CTGCTTGGGTTAACCGGGCAAGGGAAATCCACATTGGCAAACAAACTCAC
AGGTACGGACCACTTCCATGTCTCCGATGCGGGAACTGGAACAGAAAGAA
TATCAGGAGCTATCGCTGAAGGGGGACTCCTTGGATCAGGCAGCAACGTT
ATGGTCTGGGATACACCAGGAATGGACGACCAACAAGGTCGAGATCGTAT
ATATGAGAGTATGCTGTACCAACATTTAACTAGAGAAAACACTGTCTCTA
CTATCATAATTGTTTCTAAGGATGGGTCTCGGTTCCCGACATCCCTCAGA
CGCACAATTGCTGTATATCGGCAAGCTTTTGGAGATGCGTTTCTTTCCTG
TGTTTGCGTATGCGTCGGTCTCAACGAAAACATAGAGAGCGAGAGCGTGT
TACAGGCAAGACAAAGTTTTTGGGAAGCAAATTTGATGAGAACATTCAAG
TTCTCTGAAGAAGCTGTTCGGCGTAAGGTGTTCTTCTATGATGCAAGAAG
TTCAAGAGTGCAACTAAGTGCTAACAGACTGAAAGCTTTCATAATTAGTG
GGAGACCCCATTTGACAGGAACTGGTGTCGCTATTCTTCAAGGGCTCAAG
CGTCTACAAAGTGCTCAATTGCAAGACGAAGAAAAACGGAATATGGTTCG
TGTCTCTAAGGAAATGTTTAAAGCGCTTCGAACCGAGTTGCAGCTTTTTC
AAAGGGTGAGAATAAGGTTTTCTCGTGACTCGCAACGCTTATCTGAGAAG
ATGACACTTCATTTGCTTCCAAATATCGAGGATAGAATTGTTAGCTTTTT
TCGCAATCGCAGAAAACAACGGGAGGTTGTGTACGATAAGGTAATTCAAA
TTGTAGCGAAAGGAAAAAGGGCGAAGCAGCTTCTCTCCTTCGATTATCTC
TCGCATCCTGAAATGGGCTGTCATATGAAGATAAAGATATTTGCCAACTA
TGCCGATACTTGGGACTTGGTTCTTGCCAACATGGGTGCAAAGCCTGTCG
ATACTGGATGGGGGAAGATTCAACTTCAAACATATAACCTCATACACTTG
GACGATCAGCTCGATAAGACCGTTTTCGACGCAGTAGACAAACTATTGAA
CGTGATGGCTATTGATCCGAAGTTTGTTAACGCTTTCGCAAGAAGATAA