Ggra2092.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2092.t1
Unique NameGgra2092.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length306
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:244033..244950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38727.Pavir.Fb01909.1.p
PFAMsperoxidase
Max annot lvl35493|Streptophyta
KEGG rclassRC00092
KEGG koko:K00434
KEGG ReactionR00644
KEGG Pathwayko00053,ko00480,map00053,map00480
GOsGO:0000003,GO:0000302,GO:0003006,GO:0003674,GO:0003824,GO:0004130,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009636,GO:0009791,GO:0009845,GO:0009987,GO:0010154,GO:0010431,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0021700,GO:0022414,GO:0032501,GO:0032502,GO:0032504,GO:0033554,GO:0034599,GO:0042221,GO:0042737,GO:0042743,GO:0042744,GO:0044237,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0048316,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0055114,GO:0061458,GO:0070887,GO:0071695,GO:0072593,GO:0090351,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1990748
Evalue2.95e-10
EggNOG OGsCOG0376@1|root,2QU9K@2759|Eukaryota,37SQ3@33090|Viridiplantae,3GDCD@35493|Streptophyta,3KNX0@4447|Liliopsida,3IEYR@38820|Poales
EC1.11.1.11
DescriptionBelongs to the peroxidase family
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2092Ggra2092Gracilaria gracilis GNS1m malegenetig00000900_pilon 244033..244950 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2092.t1.start1Ggra2092.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 244033..244035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2092.t1.CDS1Ggra2092.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 244033..244950 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2092.t1.exon1Ggra2092.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 244033..244950 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2092.t1.stop1Ggra2092.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 244948..244950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2092.t1Ggra2092.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 244033..244950 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2092.t1 ID=Ggra2092.t1|Name=Ggra2092.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=306bp
MDPYSLLRSTLVISLLLHFTVCDASETLSPIVSQTCLNSEAEQSFRDTLN
FRLSGDKALLPGFVRAAFHDCITATSSNSNSGCNGNLRLRVELRNSDNAR
LGRTIRVIRDALRESGACISFADGIQIGAEIALAIAGDVNLEGQLAELDN
LREDVDSPDASTDDLSNELPDRRASFATLRAFYSRKGFAAREMVVSLVGG
HALGRFRTDGNVSKFTRRQFRFDNSYALNLKQRIDSDENLSGFNTLESDE
AMISMVRGRNWIRYYAGKIDDSDEYDDDLGLNRTITDFGNFMIKLSQMTS
DGIDS*
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spliced messenger RNA

>Ggra2092.t1 ID=Ggra2092.t1|Name=Ggra2092.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=918bp|location=Sequence derived from alignment at tig00000900_pilon:244033..244950+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCCCTACTCTCTCCTCCGATCCACTCTCGTAATAAGTCTGTTGCT
CCATTTTACAGTATGTGATGCATCTGAAACCCTCTCCCCGATAGTCAGCC
AAACCTGCCTCAATTCCGAAGCAGAGCAGAGTTTCCGAGATACGCTCAAT
TTCAGGCTAAGTGGCGATAAAGCCCTCCTCCCCGGTTTCGTTCGCGCAGC
CTTCCACGATTGCATTACTGCTACTTCAAGCAACAGCAATTCCGGCTGCA
ACGGAAATCTAAGACTACGGGTTGAACTCAGAAACTCCGATAATGCCCGT
TTGGGGAGAACCATTAGGGTGATTCGTGATGCTCTCAGAGAATCTGGTGC
TTGCATCTCGTTCGCCGATGGAATTCAAATAGGTGCTGAAATTGCATTAG
CTATAGCTGGTGATGTCAATCTTGAAGGACAATTAGCAGAATTGGATAAC
CTTAGGGAGGATGTCGATTCCCCAGATGCGTCTACTGATGATCTTTCAAA
TGAGCTGCCAGACCGCAGGGCTTCGTTCGCTACATTGAGAGCCTTTTACT
CCAGGAAGGGTTTCGCAGCCAGGGAAATGGTGGTGTCCCTGGTGGGCGGA
CATGCCTTGGGCAGGTTCAGAACTGACGGAAATGTCTCCAAGTTTACTCG
GAGGCAATTTCGATTCGACAACTCCTATGCTCTGAATCTTAAGCAACGTA
TTGACAGTGACGAAAACTTGTCTGGCTTCAACACGCTAGAGAGCGATGAG
GCTATGATTTCTATGGTAAGAGGAAGAAATTGGATCCGGTACTATGCCGG
GAAGATAGATGATAGTGATGAATACGATGATGATCTTGGTCTAAACCGAA
CGATTACGGACTTCGGAAATTTCATGATCAAACTGTCCCAGATGACTTCC
GATGGCATAGACTCGTAA
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protein sequence of Ggra2092.t1

>Ggra2092.t1 ID=Ggra2092.t1|Name=Ggra2092.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=306bp
MDPYSLLRSTLVISLLLHFTVCDASETLSPIVSQTCLNSEAEQSFRDTLN
FRLSGDKALLPGFVRAAFHDCITATSSNSNSGCNGNLRLRVELRNSDNAR
LGRTIRVIRDALRESGACISFADGIQIGAEIALAIAGDVNLEGQLAELDN
LREDVDSPDASTDDLSNELPDRRASFATLRAFYSRKGFAAREMVVSLVGG
HALGRFRTDGNVSKFTRRQFRFDNSYALNLKQRIDSDENLSGFNTLESDE
AMISMVRGRNWIRYYAGKIDDSDEYDDDLGLNRTITDFGNFMIKLSQMTS
DGIDS*
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mRNA from alignment at tig00000900_pilon:244033..244950+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2092.t1 ID=Ggra2092.t1|Name=Ggra2092.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=918bp|location=Sequence derived from alignment at tig00000900_pilon:244033..244950+ (Gracilaria gracilis GNS1m male)
ATGGACCCCTACTCTCTCCTCCGATCCACTCTCGTAATAAGTCTGTTGCT
CCATTTTACAGTATGTGATGCATCTGAAACCCTCTCCCCGATAGTCAGCC
AAACCTGCCTCAATTCCGAAGCAGAGCAGAGTTTCCGAGATACGCTCAAT
TTCAGGCTAAGTGGCGATAAAGCCCTCCTCCCCGGTTTCGTTCGCGCAGC
CTTCCACGATTGCATTACTGCTACTTCAAGCAACAGCAATTCCGGCTGCA
ACGGAAATCTAAGACTACGGGTTGAACTCAGAAACTCCGATAATGCCCGT
TTGGGGAGAACCATTAGGGTGATTCGTGATGCTCTCAGAGAATCTGGTGC
TTGCATCTCGTTCGCCGATGGAATTCAAATAGGTGCTGAAATTGCATTAG
CTATAGCTGGTGATGTCAATCTTGAAGGACAATTAGCAGAATTGGATAAC
CTTAGGGAGGATGTCGATTCCCCAGATGCGTCTACTGATGATCTTTCAAA
TGAGCTGCCAGACCGCAGGGCTTCGTTCGCTACATTGAGAGCCTTTTACT
CCAGGAAGGGTTTCGCAGCCAGGGAAATGGTGGTGTCCCTGGTGGGCGGA
CATGCCTTGGGCAGGTTCAGAACTGACGGAAATGTCTCCAAGTTTACTCG
GAGGCAATTTCGATTCGACAACTCCTATGCTCTGAATCTTAAGCAACGTA
TTGACAGTGACGAAAACTTGTCTGGCTTCAACACGCTAGAGAGCGATGAG
GCTATGATTTCTATGGTAAGAGGAAGAAATTGGATCCGGTACTATGCCGG
GAAGATAGATGATAGTGATGAATACGATGATGATCTTGGTCTAAACCGAA
CGATTACGGACTTCGGAAATTTCATGATCAAACTGTCCCAGATGACTTCC
GATGGCATAGACTCGTAA
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Coding sequence (CDS) from alignment at tig00000900_pilon:244033..244950+

>Ggra2092.t1 ID=Ggra2092.t1|Name=Ggra2092.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=918bp|location=Sequence derived from alignment at tig00000900_pilon:244033..244950+ (Gracilaria gracilis GNS1m male)
ATGGACCCCTACTCTCTCCTCCGATCCACTCTCGTAATAAGTCTGTTGCT
CCATTTTACAGTATGTGATGCATCTGAAACCCTCTCCCCGATAGTCAGCC
AAACCTGCCTCAATTCCGAAGCAGAGCAGAGTTTCCGAGATACGCTCAAT
TTCAGGCTAAGTGGCGATAAAGCCCTCCTCCCCGGTTTCGTTCGCGCAGC
CTTCCACGATTGCATTACTGCTACTTCAAGCAACAGCAATTCCGGCTGCA
ACGGAAATCTAAGACTACGGGTTGAACTCAGAAACTCCGATAATGCCCGT
TTGGGGAGAACCATTAGGGTGATTCGTGATGCTCTCAGAGAATCTGGTGC
TTGCATCTCGTTCGCCGATGGAATTCAAATAGGTGCTGAAATTGCATTAG
CTATAGCTGGTGATGTCAATCTTGAAGGACAATTAGCAGAATTGGATAAC
CTTAGGGAGGATGTCGATTCCCCAGATGCGTCTACTGATGATCTTTCAAA
TGAGCTGCCAGACCGCAGGGCTTCGTTCGCTACATTGAGAGCCTTTTACT
CCAGGAAGGGTTTCGCAGCCAGGGAAATGGTGGTGTCCCTGGTGGGCGGA
CATGCCTTGGGCAGGTTCAGAACTGACGGAAATGTCTCCAAGTTTACTCG
GAGGCAATTTCGATTCGACAACTCCTATGCTCTGAATCTTAAGCAACGTA
TTGACAGTGACGAAAACTTGTCTGGCTTCAACACGCTAGAGAGCGATGAG
GCTATGATTTCTATGGTAAGAGGAAGAAATTGGATCCGGTACTATGCCGG
GAAGATAGATGATAGTGATGAATACGATGATGATCTTGGTCTAAACCGAA
CGATTACGGACTTCGGAAATTTCATGATCAAACTGTCCCAGATGACTTCC
GATGGCATAGACTCGTAA
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