Ggra2091.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2091.t1
Unique NameGgra2091.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length262
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:241036..241821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog161934.XP_010679718.1
PFAMsCRAL_TRIO,CRAL_TRIO_N
Max annot lvl35493|Streptophyta
Evalue2.04e-37
EggNOG OGsKOG1470@1|root,KOG1470@2759|Eukaryota,37M33@33090|Viridiplantae,3G7C9@35493|Streptophyta
DescriptionRandom slug protein
COG categoryI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2091Ggra2091Gracilaria gracilis GNS1m malegenetig00000900_pilon 241036..241821 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2091.t1.start1Ggra2091.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 241036..241038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2091.t1.CDS1Ggra2091.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 241036..241821 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2091.t1.exon1Ggra2091.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 241036..241821 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2091.t1.stop1Ggra2091.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 241819..241821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2091.t1Ggra2091.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 241036..241821 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2091.t1 ID=Ggra2091.t1|Name=Ggra2091.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=262bp
MLSRLRSVYSSTPDPQLPSDSLEALKVLVERESQDPVNSKFLTETTLKRY
LTARKDDPAKSFKQLNDTLSWRLSYKPFSLYQLHKQSLHHEAQSGKMYVL
PTVDSSGRAVIIMRPGLENSADGEGNIRYLVYTLERAAYMSEQTGDGKFI
VIVDYFTGKISTATCPSLSTMKQTTNILQTHYPERLGGMVFYNAPSFFFG
LFKMIRPFIDPVTREKLRFVKRGQTVDAPFLDWQAIPAEYGGQLEYQFEV
EQYFEYEQLPK*
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spliced messenger RNA

>Ggra2091.t1 ID=Ggra2091.t1|Name=Ggra2091.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00000900_pilon:241036..241821+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTCCAGACTACGTAGCGTGTACTCTTCCACGCCCGACCCACAACT
CCCGTCCGACTCGCTTGAGGCGCTCAAGGTTTTGGTCGAACGCGAGTCGC
AGGACCCCGTCAACTCCAAGTTTCTCACTGAAACCACCTTGAAGCGCTAT
CTGACCGCTAGGAAGGATGACCCCGCCAAGTCATTCAAACAGCTCAATGA
CACGCTTTCGTGGAGATTGTCATATAAACCGTTCAGTTTGTATCAGCTTC
ACAAGCAATCGCTGCATCATGAAGCGCAATCCGGGAAAATGTATGTGTTG
CCGACTGTAGATAGTAGCGGCAGAGCTGTCATCATCATGAGACCCGGTTT
GGAAAACTCTGCCGACGGGGAAGGTAATATTCGCTATCTAGTGTATACGC
TTGAACGAGCCGCATATATGTCGGAACAAACTGGTGATGGAAAGTTCATC
GTTATTGTTGACTACTTTACCGGCAAGATTTCTACTGCGACATGTCCATC
TTTATCTACCATGAAGCAAACCACGAATATTCTTCAAACGCACTACCCGG
AAAGATTGGGTGGTATGGTGTTTTACAACGCTCCCTCATTTTTTTTCGGT
CTGTTCAAAATGATTCGCCCGTTTATTGACCCCGTTACAAGAGAGAAACT
GCGCTTCGTCAAGAGGGGACAAACCGTCGATGCCCCCTTCTTGGACTGGC
AAGCCATACCTGCAGAATACGGTGGACAGCTTGAATATCAGTTTGAAGTA
GAACAATACTTCGAATACGAGCAACTACCCAAGTAA
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protein sequence of Ggra2091.t1

>Ggra2091.t1 ID=Ggra2091.t1|Name=Ggra2091.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=262bp
MLSRLRSVYSSTPDPQLPSDSLEALKVLVERESQDPVNSKFLTETTLKRY
LTARKDDPAKSFKQLNDTLSWRLSYKPFSLYQLHKQSLHHEAQSGKMYVL
PTVDSSGRAVIIMRPGLENSADGEGNIRYLVYTLERAAYMSEQTGDGKFI
VIVDYFTGKISTATCPSLSTMKQTTNILQTHYPERLGGMVFYNAPSFFFG
LFKMIRPFIDPVTREKLRFVKRGQTVDAPFLDWQAIPAEYGGQLEYQFEV
EQYFEYEQLPK*
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mRNA from alignment at tig00000900_pilon:241036..241821+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2091.t1 ID=Ggra2091.t1|Name=Ggra2091.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00000900_pilon:241036..241821+ (Gracilaria gracilis GNS1m male)
ATGCTCTCCAGACTACGTAGCGTGTACTCTTCCACGCCCGACCCACAACT
CCCGTCCGACTCGCTTGAGGCGCTCAAGGTTTTGGTCGAACGCGAGTCGC
AGGACCCCGTCAACTCCAAGTTTCTCACTGAAACCACCTTGAAGCGCTAT
CTGACCGCTAGGAAGGATGACCCCGCCAAGTCATTCAAACAGCTCAATGA
CACGCTTTCGTGGAGATTGTCATATAAACCGTTCAGTTTGTATCAGCTTC
ACAAGCAATCGCTGCATCATGAAGCGCAATCCGGGAAAATGTATGTGTTG
CCGACTGTAGATAGTAGCGGCAGAGCTGTCATCATCATGAGACCCGGTTT
GGAAAACTCTGCCGACGGGGAAGGTAATATTCGCTATCTAGTGTATACGC
TTGAACGAGCCGCATATATGTCGGAACAAACTGGTGATGGAAAGTTCATC
GTTATTGTTGACTACTTTACCGGCAAGATTTCTACTGCGACATGTCCATC
TTTATCTACCATGAAGCAAACCACGAATATTCTTCAAACGCACTACCCGG
AAAGATTGGGTGGTATGGTGTTTTACAACGCTCCCTCATTTTTTTTCGGT
CTGTTCAAAATGATTCGCCCGTTTATTGACCCCGTTACAAGAGAGAAACT
GCGCTTCGTCAAGAGGGGACAAACCGTCGATGCCCCCTTCTTGGACTGGC
AAGCCATACCTGCAGAATACGGTGGACAGCTTGAATATCAGTTTGAAGTA
GAACAATACTTCGAATACGAGCAACTACCCAAGTAA
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Coding sequence (CDS) from alignment at tig00000900_pilon:241036..241821+

>Ggra2091.t1 ID=Ggra2091.t1|Name=Ggra2091.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=786bp|location=Sequence derived from alignment at tig00000900_pilon:241036..241821+ (Gracilaria gracilis GNS1m male)
ATGCTCTCCAGACTACGTAGCGTGTACTCTTCCACGCCCGACCCACAACT
CCCGTCCGACTCGCTTGAGGCGCTCAAGGTTTTGGTCGAACGCGAGTCGC
AGGACCCCGTCAACTCCAAGTTTCTCACTGAAACCACCTTGAAGCGCTAT
CTGACCGCTAGGAAGGATGACCCCGCCAAGTCATTCAAACAGCTCAATGA
CACGCTTTCGTGGAGATTGTCATATAAACCGTTCAGTTTGTATCAGCTTC
ACAAGCAATCGCTGCATCATGAAGCGCAATCCGGGAAAATGTATGTGTTG
CCGACTGTAGATAGTAGCGGCAGAGCTGTCATCATCATGAGACCCGGTTT
GGAAAACTCTGCCGACGGGGAAGGTAATATTCGCTATCTAGTGTATACGC
TTGAACGAGCCGCATATATGTCGGAACAAACTGGTGATGGAAAGTTCATC
GTTATTGTTGACTACTTTACCGGCAAGATTTCTACTGCGACATGTCCATC
TTTATCTACCATGAAGCAAACCACGAATATTCTTCAAACGCACTACCCGG
AAAGATTGGGTGGTATGGTGTTTTACAACGCTCCCTCATTTTTTTTCGGT
CTGTTCAAAATGATTCGCCCGTTTATTGACCCCGTTACAAGAGAGAAACT
GCGCTTCGTCAAGAGGGGACAAACCGTCGATGCCCCCTTCTTGGACTGGC
AAGCCATACCTGCAGAATACGGTGGACAGCTTGAATATCAGTTTGAAGTA
GAACAATACTTCGAATACGAGCAACTACCCAAGTAA
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