Ggra2089.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2089.t1
Unique NameGgra2089.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length339
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:238952..239968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2089Ggra2089Gracilaria gracilis GNS1m malegenetig00000900_pilon 238952..239968 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2089.t1.start1Ggra2089.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 238952..238954 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2089.t1.CDS1Ggra2089.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 238952..239968 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2089.t1.exon1Ggra2089.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 238952..239968 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2089.t1.stop1Ggra2089.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 239966..239968 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2089.t1Ggra2089.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 238952..239968 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2089.t1 ID=Ggra2089.t1|Name=Ggra2089.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=339bp
MSFLFSPSHRNAGIRTFAAPFTAPAFTLFGVRISRDHILRLSAILTLRTL
LTVFDLPLEDTAAVYLSSLLSSVTNVTIFLALTSNYFHYEGFLGRIGGFL
FPSSRKPSAFITIYSRVVFVLGPFLSWFESAVITYEIMRLARTWETNMQR
AQSQGSSTLKRLLLLFTFVCLTCAALLGTYVAMIHPQYAATAATTSVLLL
SYSFFNDDANVVEASMLSLYACVVLLFGWLEAQVLSDEGRAMLLIVTVVL
LFASMSRATRFVRLMMIGFDAFSEEERTGMKWGQGSVRRAFGVFTIVALT
FRTLVWSGDIRNGEYFPLLCRGVQVMAIVFLYILYSQR*
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spliced messenger RNA

>Ggra2089.t1 ID=Ggra2089.t1|Name=Ggra2089.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000900_pilon:238952..239968+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTTCTTGTTCTCGCCATCACACCGCAATGCGGGCATCCGCACGTT
CGCAGCACCGTTCACAGCCCCAGCCTTCACCTTGTTCGGTGTGCGGATTT
CTCGCGACCACATACTACGTCTGTCGGCCATCCTGACGCTGCGCACGTTG
CTCACTGTGTTCGACCTTCCTTTGGAGGATACCGCTGCTGTGTATCTTTC
TTCGTTGCTTTCTTCCGTCACTAACGTCACCATTTTTCTGGCCCTGACCT
CTAATTACTTTCATTATGAAGGTTTTCTTGGGCGTATCGGAGGGTTCTTG
TTCCCATCGTCTAGGAAACCTTCTGCGTTTATCACCATTTACTCTAGAGT
TGTGTTCGTACTTGGACCGTTTCTGTCGTGGTTTGAGTCAGCTGTCATTA
CGTATGAGATTATGAGGCTTGCACGCACATGGGAGACAAACATGCAACGC
GCACAAAGTCAAGGTTCATCCACCCTGAAACGTCTTTTGCTACTGTTCAC
CTTTGTATGTCTCACATGCGCCGCGTTACTGGGTACATATGTGGCCATGA
TTCATCCACAATATGCCGCCACGGCGGCTACAACCAGCGTACTACTGCTC
TCCTACTCGTTTTTCAACGACGATGCCAACGTCGTAGAGGCTTCCATGCT
CAGTCTGTACGCCTGCGTCGTGTTACTTTTCGGTTGGTTAGAAGCACAAG
TGCTTTCTGACGAAGGCAGAGCCATGTTACTCATTGTCACCGTGGTGCTG
TTGTTTGCCTCAATGTCGAGAGCAACGCGCTTCGTGCGTCTTATGATGAT
CGGATTCGATGCATTCAGCGAAGAAGAACGTACTGGAATGAAATGGGGAC
AGGGCTCTGTTCGACGGGCGTTTGGCGTATTTACTATTGTTGCGTTAACG
TTTCGCACGCTCGTTTGGTCTGGCGATATAAGAAACGGAGAGTACTTTCC
TTTGCTATGTCGAGGCGTTCAAGTAATGGCCATAGTGTTTCTATACATTT
TGTATTCGCAACGATGA
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protein sequence of Ggra2089.t1

>Ggra2089.t1 ID=Ggra2089.t1|Name=Ggra2089.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=339bp
MSFLFSPSHRNAGIRTFAAPFTAPAFTLFGVRISRDHILRLSAILTLRTL
LTVFDLPLEDTAAVYLSSLLSSVTNVTIFLALTSNYFHYEGFLGRIGGFL
FPSSRKPSAFITIYSRVVFVLGPFLSWFESAVITYEIMRLARTWETNMQR
AQSQGSSTLKRLLLLFTFVCLTCAALLGTYVAMIHPQYAATAATTSVLLL
SYSFFNDDANVVEASMLSLYACVVLLFGWLEAQVLSDEGRAMLLIVTVVL
LFASMSRATRFVRLMMIGFDAFSEEERTGMKWGQGSVRRAFGVFTIVALT
FRTLVWSGDIRNGEYFPLLCRGVQVMAIVFLYILYSQR*
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mRNA from alignment at tig00000900_pilon:238952..239968+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2089.t1 ID=Ggra2089.t1|Name=Ggra2089.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000900_pilon:238952..239968+ (Gracilaria gracilis GNS1m male)
ATGAGCTTCTTGTTCTCGCCATCACACCGCAATGCGGGCATCCGCACGTT
CGCAGCACCGTTCACAGCCCCAGCCTTCACCTTGTTCGGTGTGCGGATTT
CTCGCGACCACATACTACGTCTGTCGGCCATCCTGACGCTGCGCACGTTG
CTCACTGTGTTCGACCTTCCTTTGGAGGATACCGCTGCTGTGTATCTTTC
TTCGTTGCTTTCTTCCGTCACTAACGTCACCATTTTTCTGGCCCTGACCT
CTAATTACTTTCATTATGAAGGTTTTCTTGGGCGTATCGGAGGGTTCTTG
TTCCCATCGTCTAGGAAACCTTCTGCGTTTATCACCATTTACTCTAGAGT
TGTGTTCGTACTTGGACCGTTTCTGTCGTGGTTTGAGTCAGCTGTCATTA
CGTATGAGATTATGAGGCTTGCACGCACATGGGAGACAAACATGCAACGC
GCACAAAGTCAAGGTTCATCCACCCTGAAACGTCTTTTGCTACTGTTCAC
CTTTGTATGTCTCACATGCGCCGCGTTACTGGGTACATATGTGGCCATGA
TTCATCCACAATATGCCGCCACGGCGGCTACAACCAGCGTACTACTGCTC
TCCTACTCGTTTTTCAACGACGATGCCAACGTCGTAGAGGCTTCCATGCT
CAGTCTGTACGCCTGCGTCGTGTTACTTTTCGGTTGGTTAGAAGCACAAG
TGCTTTCTGACGAAGGCAGAGCCATGTTACTCATTGTCACCGTGGTGCTG
TTGTTTGCCTCAATGTCGAGAGCAACGCGCTTCGTGCGTCTTATGATGAT
CGGATTCGATGCATTCAGCGAAGAAGAACGTACTGGAATGAAATGGGGAC
AGGGCTCTGTTCGACGGGCGTTTGGCGTATTTACTATTGTTGCGTTAACG
TTTCGCACGCTCGTTTGGTCTGGCGATATAAGAAACGGAGAGTACTTTCC
TTTGCTATGTCGAGGCGTTCAAGTAATGGCCATAGTGTTTCTATACATTT
TGTATTCGCAACGATGA
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Coding sequence (CDS) from alignment at tig00000900_pilon:238952..239968+

>Ggra2089.t1 ID=Ggra2089.t1|Name=Ggra2089.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1017bp|location=Sequence derived from alignment at tig00000900_pilon:238952..239968+ (Gracilaria gracilis GNS1m male)
ATGAGCTTCTTGTTCTCGCCATCACACCGCAATGCGGGCATCCGCACGTT
CGCAGCACCGTTCACAGCCCCAGCCTTCACCTTGTTCGGTGTGCGGATTT
CTCGCGACCACATACTACGTCTGTCGGCCATCCTGACGCTGCGCACGTTG
CTCACTGTGTTCGACCTTCCTTTGGAGGATACCGCTGCTGTGTATCTTTC
TTCGTTGCTTTCTTCCGTCACTAACGTCACCATTTTTCTGGCCCTGACCT
CTAATTACTTTCATTATGAAGGTTTTCTTGGGCGTATCGGAGGGTTCTTG
TTCCCATCGTCTAGGAAACCTTCTGCGTTTATCACCATTTACTCTAGAGT
TGTGTTCGTACTTGGACCGTTTCTGTCGTGGTTTGAGTCAGCTGTCATTA
CGTATGAGATTATGAGGCTTGCACGCACATGGGAGACAAACATGCAACGC
GCACAAAGTCAAGGTTCATCCACCCTGAAACGTCTTTTGCTACTGTTCAC
CTTTGTATGTCTCACATGCGCCGCGTTACTGGGTACATATGTGGCCATGA
TTCATCCACAATATGCCGCCACGGCGGCTACAACCAGCGTACTACTGCTC
TCCTACTCGTTTTTCAACGACGATGCCAACGTCGTAGAGGCTTCCATGCT
CAGTCTGTACGCCTGCGTCGTGTTACTTTTCGGTTGGTTAGAAGCACAAG
TGCTTTCTGACGAAGGCAGAGCCATGTTACTCATTGTCACCGTGGTGCTG
TTGTTTGCCTCAATGTCGAGAGCAACGCGCTTCGTGCGTCTTATGATGAT
CGGATTCGATGCATTCAGCGAAGAAGAACGTACTGGAATGAAATGGGGAC
AGGGCTCTGTTCGACGGGCGTTTGGCGTATTTACTATTGTTGCGTTAACG
TTTCGCACGCTCGTTTGGTCTGGCGATATAAGAAACGGAGAGTACTTTCC
TTTGCTATGTCGAGGCGTTCAAGTAATGGCCATAGTGTTTCTATACATTT
TGTATTCGCAACGATGA
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