Ggra2088.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2088.t1
Unique NameGgra2088.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length847
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:236143..238683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2088Ggra2088Gracilaria gracilis GNS1m malegenetig00000900_pilon 236143..238683 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2088.t1.stop1Ggra2088.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 236143..236145 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2088.t1.CDS1Ggra2088.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 236143..238683 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2088.t1.exon1Ggra2088.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 236143..238683 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2088.t1.start1Ggra2088.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 238681..238683 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2088.t1Ggra2088.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 236143..238683 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2088.t1 ID=Ggra2088.t1|Name=Ggra2088.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=847bp
MSTKPTTARDADAHDFLTTFASVLHVQPTEGTGSTVAASPSARRKRRRRL
RPISLTASPASERSPQTNGFAQQTANTSLQREPHEDGRLGVKEKRLSTPT
SALRGRAVSGESPFLRPVQSAAVESKREAHSVAALKGTVEADGENTPVKE
RVKEESVQLSHTLKEGAVIHATHIRAVADEGTLFLEALQSLHQLSCASFP
NDVQHRAASPIHHASASVRAAYCQAVLAELRPILRTFPIPIQRALKKTAH
EGHFPHPGTRSWVAPHPPRVSFRLLQEECSDVKPMSNRLNHNLEIAWDAL
LDMLRTYCGHKKEAAGSFSEEKLQSFMCSLHPCNMDIFASRFVNLLSTYT
INAQQPTHIRLLDERLNALSTSSNAANHTGVTLHRIPPCVLVAFDDVPAH
KFFARFLTSVDSARLNAAFLPRFLARVLQALNKVSAVGSNHEFCDAVLEA
RLYARFLAVVMHTMNWSHSPFVISGSSSSPESLPRQNRESGKEKVTDSGK
PQVQKPQVQTKENEQASQIGDNEKGASSGKQSSWKKTQQHTSQPLRPDET
PGLGSHALQWRACHLSALWQSVININELITSAVSSKQTTAVVAAAAVADV
LLRFGAIDPVAKSSTWFQNGLSAMKKLRIIDQTGELHMPLVQFLKTDLLT
CDQIDAKDVEWRRGQPFDDKYVLQCDANEWSTIGNMRLLQECCTSLARFR
KNLAESSDTKLQKTASRRITPQMKGTTDSPSPLHDRFAPGTNGMSKKGGQ
EGQEGQEDCIDQDTQERFRREFLSRLDSRLLELMQIVMSSRPNSEEDARK
KYSRVAKTLYSDVPVTVRAVAAHICGHQVQSRLKSEQKRTASNVNQ*
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spliced messenger RNA

>Ggra2088.t1 ID=Ggra2088.t1|Name=Ggra2088.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2541bp|location=Sequence derived from alignment at tig00000900_pilon:236143..238683- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACTAAGCCCACCACCGCTCGCGACGCCGACGCGCACGACTTCCT
CACCACGTTCGCGTCCGTGTTGCATGTACAACCTACCGAAGGTACCGGCT
CCACAGTCGCTGCATCGCCATCTGCGCGACGAAAGCGACGTCGTCGACTA
CGCCCCATCTCGCTCACAGCCTCGCCTGCGAGCGAGCGCTCACCGCAGAC
AAATGGATTTGCGCAGCAGACAGCAAACACCTCTCTGCAGCGTGAGCCGC
ACGAAGACGGCCGGCTGGGTGTGAAAGAGAAGCGGCTGTCGACGCCGACG
TCTGCGCTGCGCGGGCGCGCGGTGAGCGGGGAGAGCCCGTTTCTGCGGCC
AGTGCAGAGCGCGGCTGTCGAATCTAAGCGGGAGGCGCATTCTGTCGCGG
CGTTGAAAGGGACCGTCGAGGCTGATGGTGAAAATACGCCTGTCAAGGAA
CGCGTGAAGGAAGAAAGCGTGCAGTTATCTCATACTCTCAAGGAAGGGGC
TGTTATTCATGCTACGCACATTCGCGCTGTTGCGGACGAGGGCACTTTGT
TTCTAGAAGCGTTACAGTCTCTTCATCAACTTTCGTGCGCTTCTTTCCCG
AATGACGTTCAACATCGCGCTGCAAGCCCGATTCATCACGCCTCTGCTTC
TGTAAGAGCGGCGTATTGTCAAGCTGTTCTGGCGGAGCTTCGTCCGATCC
TGCGTACATTTCCAATCCCGATACAACGCGCTCTCAAAAAGACCGCGCAT
GAAGGCCACTTTCCACACCCTGGTACGCGAAGCTGGGTAGCGCCTCATCC
ACCCCGCGTATCTTTTCGTCTTCTACAAGAGGAGTGCAGCGATGTAAAGC
CCATGTCCAACCGCCTCAACCATAATTTGGAAATAGCCTGGGACGCTCTC
TTAGACATGTTGCGCACATACTGCGGACACAAAAAGGAGGCCGCTGGTTC
CTTCAGTGAAGAAAAGCTACAAAGTTTTATGTGCTCTCTTCACCCCTGTA
ACATGGATATCTTCGCCTCCAGATTCGTGAATTTGTTAAGTACCTACACC
ATCAACGCACAGCAGCCTACTCATATCCGCTTACTTGACGAACGTCTTAA
TGCACTGTCTACCTCCTCGAATGCTGCCAATCACACCGGTGTCACGCTTC
ATCGCATTCCACCATGTGTGCTTGTAGCATTTGACGACGTTCCGGCTCAT
AAATTCTTCGCTCGATTCTTGACTTCCGTTGATTCGGCACGATTGAACGC
GGCGTTTCTTCCAAGGTTCCTTGCACGTGTGTTACAGGCTTTGAACAAAG
TTTCTGCTGTGGGTTCGAATCATGAATTTTGTGATGCAGTGCTTGAGGCT
CGTCTGTACGCTCGCTTTCTTGCTGTTGTGATGCACACGATGAATTGGTC
GCATTCACCGTTTGTCATATCGGGTTCGTCGTCGTCGCCTGAATCTTTGC
CTCGGCAGAATAGGGAATCGGGAAAGGAAAAGGTGACTGATTCGGGCAAA
CCACAAGTACAAAAACCTCAAGTGCAAACAAAAGAAAACGAACAAGCTTC
GCAAATTGGAGACAATGAAAAAGGAGCATCAAGTGGGAAACAGAGTTCAT
GGAAGAAGACGCAGCAACACACCTCTCAACCCCTACGACCTGATGAAACT
CCTGGTTTGGGTTCCCATGCACTGCAATGGCGCGCTTGCCATCTATCCGC
CTTGTGGCAAAGCGTTATCAATATCAACGAGCTAATCACCAGCGCCGTTT
CATCGAAACAAACAACGGCAGTAGTAGCAGCTGCCGCTGTGGCCGATGTG
CTGCTCAGGTTCGGCGCAATAGATCCTGTGGCAAAGTCGAGCACGTGGTT
TCAAAACGGCCTTTCTGCGATGAAAAAGCTTCGTATCATCGATCAAACAG
GTGAGCTCCATATGCCATTGGTTCAGTTCTTGAAGACAGATCTGCTGACA
TGTGATCAGATCGATGCAAAGGACGTGGAATGGCGACGCGGTCAGCCGTT
TGATGACAAGTATGTGCTGCAATGTGACGCGAATGAGTGGTCGACCATCG
GGAACATGAGATTGTTGCAGGAATGTTGCACATCACTGGCTCGGTTCCGC
AAAAATCTGGCGGAAAGTAGTGACACAAAGCTGCAAAAAACAGCGTCGCG
AAGAATCACACCTCAAATGAAAGGCACTACAGACTCCCCGTCTCCGTTGC
ACGACCGTTTCGCACCTGGGACAAATGGTATGTCGAAGAAGGGAGGACAG
GAAGGACAGGAAGGACAGGAAGATTGTATTGATCAAGATACACAAGAACG
GTTCCGAAGAGAGTTCTTGTCTCGATTAGATTCAAGATTGCTTGAATTGA
TGCAGATCGTCATGTCTTCGCGTCCAAACAGCGAGGAAGACGCGCGGAAG
AAATACTCGAGAGTAGCTAAAACGTTGTATTCAGATGTGCCAGTAACTGT
GCGAGCAGTGGCAGCACATATCTGTGGCCATCAAGTACAGTCAAGACTAA
AATCAGAACAGAAAAGAACGGCTTCGAACGTGAATCAGTAG
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protein sequence of Ggra2088.t1

>Ggra2088.t1 ID=Ggra2088.t1|Name=Ggra2088.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=847bp
MSTKPTTARDADAHDFLTTFASVLHVQPTEGTGSTVAASPSARRKRRRRL
RPISLTASPASERSPQTNGFAQQTANTSLQREPHEDGRLGVKEKRLSTPT
SALRGRAVSGESPFLRPVQSAAVESKREAHSVAALKGTVEADGENTPVKE
RVKEESVQLSHTLKEGAVIHATHIRAVADEGTLFLEALQSLHQLSCASFP
NDVQHRAASPIHHASASVRAAYCQAVLAELRPILRTFPIPIQRALKKTAH
EGHFPHPGTRSWVAPHPPRVSFRLLQEECSDVKPMSNRLNHNLEIAWDAL
LDMLRTYCGHKKEAAGSFSEEKLQSFMCSLHPCNMDIFASRFVNLLSTYT
INAQQPTHIRLLDERLNALSTSSNAANHTGVTLHRIPPCVLVAFDDVPAH
KFFARFLTSVDSARLNAAFLPRFLARVLQALNKVSAVGSNHEFCDAVLEA
RLYARFLAVVMHTMNWSHSPFVISGSSSSPESLPRQNRESGKEKVTDSGK
PQVQKPQVQTKENEQASQIGDNEKGASSGKQSSWKKTQQHTSQPLRPDET
PGLGSHALQWRACHLSALWQSVININELITSAVSSKQTTAVVAAAAVADV
LLRFGAIDPVAKSSTWFQNGLSAMKKLRIIDQTGELHMPLVQFLKTDLLT
CDQIDAKDVEWRRGQPFDDKYVLQCDANEWSTIGNMRLLQECCTSLARFR
KNLAESSDTKLQKTASRRITPQMKGTTDSPSPLHDRFAPGTNGMSKKGGQ
EGQEGQEDCIDQDTQERFRREFLSRLDSRLLELMQIVMSSRPNSEEDARK
KYSRVAKTLYSDVPVTVRAVAAHICGHQVQSRLKSEQKRTASNVNQ*
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mRNA from alignment at tig00000900_pilon:236143..238683-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2088.t1 ID=Ggra2088.t1|Name=Ggra2088.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2541bp|location=Sequence derived from alignment at tig00000900_pilon:236143..238683- (Gracilaria gracilis GNS1m male)
ATGAGCACTAAGCCCACCACCGCTCGCGACGCCGACGCGCACGACTTCCT CACCACGTTCGCGTCCGTGTTGCATGTACAACCTACCGAAGGTACCGGCT CCACAGTCGCTGCATCGCCATCTGCGCGACGAAAGCGACGTCGTCGACTA CGCCCCATCTCGCTCACAGCCTCGCCTGCGAGCGAGCGCTCACCGCAGAC AAATGGATTTGCGCAGCAGACAGCAAACACCTCTCTGCAGCGTGAGCCGC ACGAAGACGGCCGGCTGGGTGTGAAAGAGAAGCGGCTGTCGACGCCGACG TCTGCGCTGCGCGGGCGCGCGGTGAGCGGGGAGAGCCCGTTTCTGCGGCC AGTGCAGAGCGCGGCTGTCGAATCTAAGCGGGAGGCGCATTCTGTCGCGG CGTTGAAAGGGACCGTCGAGGCTGATGGTGAAAATACGCCTGTCAAGGAA CGCGTGAAGGAAGAAAGCGTGCAGTTATCTCATACTCTCAAGGAAGGGGC TGTTATTCATGCTACGCACATTCGCGCTGTTGCGGACGAGGGCACTTTGT TTCTAGAAGCGTTACAGTCTCTTCATCAACTTTCGTGCGCTTCTTTCCCG AATGACGTTCAACATCGCGCTGCAAGCCCGATTCATCACGCCTCTGCTTC TGTAAGAGCGGCGTATTGTCAAGCTGTTCTGGCGGAGCTTCGTCCGATCC TGCGTACATTTCCAATCCCGATACAACGCGCTCTCAAAAAGACCGCGCAT GAAGGCCACTTTCCACACCCTGGTACGCGAAGCTGGGTAGCGCCTCATCC ACCCCGCGTATCTTTTCGTCTTCTACAAGAGGAGTGCAGCGATGTAAAGC CCATGTCCAACCGCCTCAACCATAATTTGGAAATAGCCTGGGACGCTCTC TTAGACATGTTGCGCACATACTGCGGACACAAAAAGGAGGCCGCTGGTTC CTTCAGTGAAGAAAAGCTACAAAGTTTTATGTGCTCTCTTCACCCCTGTA ACATGGATATCTTCGCCTCCAGATTCGTGAATTTGTTAAGTACCTACACC ATCAACGCACAGCAGCCTACTCATATCCGCTTACTTGACGAACGTCTTAA TGCACTGTCTACCTCCTCGAATGCTGCCAATCACACCGGTGTCACGCTTC ATCGCATTCCACCATGTGTGCTTGTAGCATTTGACGACGTTCCGGCTCAT AAATTCTTCGCTCGATTCTTGACTTCCGTTGATTCGGCACGATTGAACGC GGCGTTTCTTCCAAGGTTCCTTGCACGTGTGTTACAGGCTTTGAACAAAG TTTCTGCTGTGGGTTCGAATCATGAATTTTGTGATGCAGTGCTTGAGGCT CGTCTGTACGCTCGCTTTCTTGCTGTTGTGATGCACACGATGAATTGGTC GCATTCACCGTTTGTCATATCGGGTTCGTCGTCGTCGCCTGAATCTTTGC CTCGGCAGAATAGGGAATCGGGAAAGGAAAAGGTGACTGATTCGGGCAAA CCACAAGTACAAAAACCTCAAGTGCAAACAAAAGAAAACGAACAAGCTTC GCAAATTGGAGACAATGAAAAAGGAGCATCAAGTGGGAAACAGAGTTCAT GGAAGAAGACGCAGCAACACACCTCTCAACCCCTACGACCTGATGAAACT CCTGGTTTGGGTTCCCATGCACTGCAATGGCGCGCTTGCCATCTATCCGC CTTGTGGCAAAGCGTTATCAATATCAACGAGCTAATCACCAGCGCCGTTT CATCGAAACAAACAACGGCAGTAGTAGCAGCTGCCGCTGTGGCCGATGTG CTGCTCAGGTTCGGCGCAATAGATCCTGTGGCAAAGTCGAGCACGTGGTT TCAAAACGGCCTTTCTGCGATGAAAAAGCTTCGTATCATCGATCAAACAG GTGAGCTCCATATGCCATTGGTTCAGTTCTTGAAGACAGATCTGCTGACA TGTGATCAGATCGATGCAAAGGACGTGGAATGGCGACGCGGTCAGCCGTT TGATGACAAGTATGTGCTGCAATGTGACGCGAATGAGTGGTCGACCATCG GGAACATGAGATTGTTGCAGGAATGTTGCACATCACTGGCTCGGTTCCGC AAAAATCTGGCGGAAAGTAGTGACACAAAGCTGCAAAAAACAGCGTCGCG AAGAATCACACCTCAAATGAAAGGCACTACAGACTCCCCGTCTCCGTTGC ACGACCGTTTCGCACCTGGGACAAATGGTATGTCGAAGAAGGGAGGACAG GAAGGACAGGAAGGACAGGAAGATTGTATTGATCAAGATACACAAGAACG GTTCCGAAGAGAGTTCTTGTCTCGATTAGATTCAAGATTGCTTGAATTGA TGCAGATCGTCATGTCTTCGCGTCCAAACAGCGAGGAAGACGCGCGGAAG AAATACTCGAGAGTAGCTAAAACGTTGTATTCAGATGTGCCAGTAACTGT GCGAGCAGTGGCAGCACATATCTGTGGCCATCAAGTACAGTCAAGACTAA AATCAGAACAGAAAAGAACGGCTTCGAACGTGAATCAGTAG
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Coding sequence (CDS) from alignment at tig00000900_pilon:236143..238683-

>Ggra2088.t1 ID=Ggra2088.t1|Name=Ggra2088.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2541bp|location=Sequence derived from alignment at tig00000900_pilon:236143..238683- (Gracilaria gracilis GNS1m male)
ATGAGCACTAAGCCCACCACCGCTCGCGACGCCGACGCGCACGACTTCCT
CACCACGTTCGCGTCCGTGTTGCATGTACAACCTACCGAAGGTACCGGCT
CCACAGTCGCTGCATCGCCATCTGCGCGACGAAAGCGACGTCGTCGACTA
CGCCCCATCTCGCTCACAGCCTCGCCTGCGAGCGAGCGCTCACCGCAGAC
AAATGGATTTGCGCAGCAGACAGCAAACACCTCTCTGCAGCGTGAGCCGC
ACGAAGACGGCCGGCTGGGTGTGAAAGAGAAGCGGCTGTCGACGCCGACG
TCTGCGCTGCGCGGGCGCGCGGTGAGCGGGGAGAGCCCGTTTCTGCGGCC
AGTGCAGAGCGCGGCTGTCGAATCTAAGCGGGAGGCGCATTCTGTCGCGG
CGTTGAAAGGGACCGTCGAGGCTGATGGTGAAAATACGCCTGTCAAGGAA
CGCGTGAAGGAAGAAAGCGTGCAGTTATCTCATACTCTCAAGGAAGGGGC
TGTTATTCATGCTACGCACATTCGCGCTGTTGCGGACGAGGGCACTTTGT
TTCTAGAAGCGTTACAGTCTCTTCATCAACTTTCGTGCGCTTCTTTCCCG
AATGACGTTCAACATCGCGCTGCAAGCCCGATTCATCACGCCTCTGCTTC
TGTAAGAGCGGCGTATTGTCAAGCTGTTCTGGCGGAGCTTCGTCCGATCC
TGCGTACATTTCCAATCCCGATACAACGCGCTCTCAAAAAGACCGCGCAT
GAAGGCCACTTTCCACACCCTGGTACGCGAAGCTGGGTAGCGCCTCATCC
ACCCCGCGTATCTTTTCGTCTTCTACAAGAGGAGTGCAGCGATGTAAAGC
CCATGTCCAACCGCCTCAACCATAATTTGGAAATAGCCTGGGACGCTCTC
TTAGACATGTTGCGCACATACTGCGGACACAAAAAGGAGGCCGCTGGTTC
CTTCAGTGAAGAAAAGCTACAAAGTTTTATGTGCTCTCTTCACCCCTGTA
ACATGGATATCTTCGCCTCCAGATTCGTGAATTTGTTAAGTACCTACACC
ATCAACGCACAGCAGCCTACTCATATCCGCTTACTTGACGAACGTCTTAA
TGCACTGTCTACCTCCTCGAATGCTGCCAATCACACCGGTGTCACGCTTC
ATCGCATTCCACCATGTGTGCTTGTAGCATTTGACGACGTTCCGGCTCAT
AAATTCTTCGCTCGATTCTTGACTTCCGTTGATTCGGCACGATTGAACGC
GGCGTTTCTTCCAAGGTTCCTTGCACGTGTGTTACAGGCTTTGAACAAAG
TTTCTGCTGTGGGTTCGAATCATGAATTTTGTGATGCAGTGCTTGAGGCT
CGTCTGTACGCTCGCTTTCTTGCTGTTGTGATGCACACGATGAATTGGTC
GCATTCACCGTTTGTCATATCGGGTTCGTCGTCGTCGCCTGAATCTTTGC
CTCGGCAGAATAGGGAATCGGGAAAGGAAAAGGTGACTGATTCGGGCAAA
CCACAAGTACAAAAACCTCAAGTGCAAACAAAAGAAAACGAACAAGCTTC
GCAAATTGGAGACAATGAAAAAGGAGCATCAAGTGGGAAACAGAGTTCAT
GGAAGAAGACGCAGCAACACACCTCTCAACCCCTACGACCTGATGAAACT
CCTGGTTTGGGTTCCCATGCACTGCAATGGCGCGCTTGCCATCTATCCGC
CTTGTGGCAAAGCGTTATCAATATCAACGAGCTAATCACCAGCGCCGTTT
CATCGAAACAAACAACGGCAGTAGTAGCAGCTGCCGCTGTGGCCGATGTG
CTGCTCAGGTTCGGCGCAATAGATCCTGTGGCAAAGTCGAGCACGTGGTT
TCAAAACGGCCTTTCTGCGATGAAAAAGCTTCGTATCATCGATCAAACAG
GTGAGCTCCATATGCCATTGGTTCAGTTCTTGAAGACAGATCTGCTGACA
TGTGATCAGATCGATGCAAAGGACGTGGAATGGCGACGCGGTCAGCCGTT
TGATGACAAGTATGTGCTGCAATGTGACGCGAATGAGTGGTCGACCATCG
GGAACATGAGATTGTTGCAGGAATGTTGCACATCACTGGCTCGGTTCCGC
AAAAATCTGGCGGAAAGTAGTGACACAAAGCTGCAAAAAACAGCGTCGCG
AAGAATCACACCTCAAATGAAAGGCACTACAGACTCCCCGTCTCCGTTGC
ACGACCGTTTCGCACCTGGGACAAATGGTATGTCGAAGAAGGGAGGACAG
GAAGGACAGGAAGGACAGGAAGATTGTATTGATCAAGATACACAAGAACG
GTTCCGAAGAGAGTTCTTGTCTCGATTAGATTCAAGATTGCTTGAATTGA
TGCAGATCGTCATGTCTTCGCGTCCAAACAGCGAGGAAGACGCGCGGAAG
AAATACTCGAGAGTAGCTAAAACGTTGTATTCAGATGTGCCAGTAACTGT
GCGAGCAGTGGCAGCACATATCTGTGGCCATCAAGTACAGTCAAGACTAA
AATCAGAACAGAAAAGAACGGCTTCGAACGTGAATCAGTAG
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