Ggra2084.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2084.t1
Unique NameGgra2084.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length702
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:159936..162399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2084Ggra2084Gracilaria gracilis GNS1m malegenetig00000900_pilon 159936..162399 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2084.t1Ggra2084.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 159936..162399 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2084.t1.start1Ggra2084.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 159936..159938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2084.t1.CDS1Ggra2084.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 159936..160836 +
Ggra2084.t1.CDS2Ggra2084.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000900_pilon 160917..161010 +
Ggra2084.t1.CDS3Ggra2084.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000900_pilon 161103..161958 +
Ggra2084.t1.CDS4Ggra2084.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000900_pilon 162145..162399 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2084.t1.exon1Ggra2084.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 159936..160836 +
Ggra2084.t1.exon2Ggra2084.t1.exon2Gracilaria gracilis GNS1m maleexontig00000900_pilon 160917..161010 +
Ggra2084.t1.exon3Ggra2084.t1.exon3Gracilaria gracilis GNS1m maleexontig00000900_pilon 161103..161958 +
Ggra2084.t1.exon4Ggra2084.t1.exon4Gracilaria gracilis GNS1m maleexontig00000900_pilon 162145..162399 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2084.t1.intron1Ggra2084.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000900_pilon 160837..160916 +
Ggra2084.t1.intron2Ggra2084.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000900_pilon 161011..161102 +
Ggra2084.t1.intron3Ggra2084.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000900_pilon 161959..162144 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2084.t1.stop1Ggra2084.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 162397..162399 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2084.t1 ID=Ggra2084.t1|Name=Ggra2084.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp
MNELIRLKKIAVNAISLADMYRYVAVLLLSRTTGFRFEKGITVFRQAGNI
APCLERIRFIADNILAYSETGRGADGGTQWNAQKDQTRQLSEFDNLAFRD
TRKVFFSSWNLLVTLNDDLYGTRASDIQVKMLSSRKADREGHPADAVADA
LFRIVLALRFRRRGAPQTQSVKNLVMTLMDGRGEEALNGCIVTSDRGYGK
QPFIEIMLEHGFGSVFVMPDHPLRVHPFVALSYLNPARDDLEEDAVASYR
HTGHRKEAISEGTPSASRNTDAIMTENFPAPGAAENRTADIFSRRQPHPY
SSLGTRVGQKKVTAIAARENGTDKFPKVLRFIPGEEHGALTLKRTTEKLI
SEHCEILTLGERCADWCVPRQFRVTGTNARSVLMSSDIVLSALGLPSIQS
NGERTTEDWFYLFCWSWFSSKVSTEAMMRSTANENAVIGSLKSMNCVEAV
FEVGMLALKNCPYLACSPDAIAIIDIQSFGQWSENEEAVLPGHHGVCVVA
SVEIKARVASSSVGEALNLAMTDIVFCEVGDDCFRKYVPKEHMTQVLHQL
LVLGLRFAVYVAAAKSGFLYTVVGKCSAAVLQLCRDELATITAPAIQWAY
ETVNVIPEFVKLDQRELQKIVSQTIKELAVNSLSGWRMFERQDLLESSQT
FRCLESCLNLLNKVQATADYMCDLSQELLSPASTLEAAEGQSREQEEEVV
G*
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spliced messenger RNA

>Ggra2084.t1 ID=Ggra2084.t1|Name=Ggra2084.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2106bp|location=Sequence derived from alignment at tig00000900_pilon:159936..162399+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGAGCTAATCAGACTAAAGAAAATTGCCGTGAACGCCATCAGTCT
TGCAGACATGTACCGGTATGTAGCGGTGCTTTTGTTGTCACGTACAACTG
GCTTTAGATTTGAGAAGGGCATCACCGTGTTTCGACAGGCAGGAAACATT
GCCCCCTGTCTGGAAAGAATAAGGTTTATTGCTGACAACATTTTAGCCTA
CTCCGAAACTGGTAGAGGGGCAGACGGTGGTACGCAGTGGAATGCTCAGA
AAGATCAAACAAGGCAGTTGTCTGAATTTGATAACCTTGCTTTCAGAGAC
ACCAGAAAAGTATTCTTTTCTTCTTGGAACCTTCTCGTCACTCTAAATGA
CGATTTATACGGTACTCGGGCATCGGATATTCAAGTAAAAATGCTCAGCT
CACGTAAGGCGGACCGAGAGGGTCACCCCGCAGATGCTGTTGCTGACGCT
CTCTTTCGAATCGTACTAGCCTTACGCTTTCGCCGGAGAGGTGCACCACA
AACGCAGTCCGTTAAAAATTTGGTAATGACGCTAATGGATGGGCGTGGTG
AGGAGGCTTTGAATGGGTGTATCGTAACCTCCGACCGTGGCTACGGCAAG
CAGCCATTTATTGAGATTATGCTTGAGCATGGCTTTGGCTCTGTCTTCGT
GATGCCAGATCATCCCCTTCGTGTGCACCCGTTTGTGGCACTTTCCTATC
TTAACCCAGCGCGGGATGATTTAGAGGAAGACGCTGTAGCAAGCTACAGG
CATACAGGGCACAGAAAGGAAGCCATTTCTGAAGGTACACCGTCTGCTTC
GAGGAATACTGATGCAATTATGACAGAGAATTTTCCCGCTCCAGGTGCAG
CTGAAAATAGAACTGCAGATATTTTTAGTCGGCGACAACCGCATCCGTAC
AGCTCCCTGGGCACAAGGGTGGGACAGAAGAAGGTGACGGCAATTGCCGC
TCGCGAGAATGGAACCGATAAGTTCCCGAAGGTTTTGCGGTTTATCCCAG
GCGAGGAGCACGGAGCTCTAACTCTGAAACGTACTACTGAAAAACTCATT
TCCGAGCATTGTGAAATCCTCACACTTGGAGAACGATGCGCAGACTGGTG
TGTACCCCGACAGTTTAGAGTAACTGGCACCAATGCGCGAAGTGTGCTCA
TGAGCAGTGACATTGTGCTTTCAGCACTGGGTCTGCCATCGATTCAATCC
AATGGCGAAAGAACGACTGAAGATTGGTTTTACTTGTTCTGTTGGAGCTG
GTTCAGTTCAAAAGTATCTACGGAAGCTATGATGAGGAGTACCGCTAACG
AGAATGCTGTTATAGGGTCTCTGAAATCGATGAATTGTGTTGAGGCTGTC
TTCGAAGTGGGCATGCTTGCTCTTAAGAATTGCCCTTATCTTGCTTGCTC
CCCTGACGCAATTGCAATAATTGACATTCAGTCCTTTGGGCAGTGGTCCG
AAAATGAAGAGGCAGTGCTCCCTGGTCATCACGGAGTTTGTGTGGTAGCA
TCCGTAGAGATTAAGGCGCGTGTAGCCTCGTCAAGCGTAGGAGAAGCCCT
GAACCTAGCAATGACGGATATTGTATTCTGTGAAGTGGGTGATGACTGCT
TTAGAAAGTATGTTCCGAAGGAACACATGACTCAAGTATTGCACCAACTA
CTGGTACTTGGTTTAAGATTTGCAGTTTATGTGGCAGCCGCTAAAAGCGG
TTTCCTATATACAGTGGTCGGAAAATGTTCTGCAGCAGTTTTACAGCTCT
GCCGAGACGAGCTGGCGACGATAACGGCCCCTGCAATTCAGTGGGCTTAC
GAAACCGTCAACGTGATTCCAGAGTTTGTAAAACTGGACCAACGAGAGCT
CCAGAAGATTGTCTCTCAAACAATCAAGGAGCTCGCTGTGAATTCTTTGT
CCGGGTGGCGTATGTTTGAAAGACAAGATTTGCTCGAGTCTTCTCAGACT
TTTAGATGTTTAGAGAGCTGCCTTAATTTGCTCAATAAGGTTCAGGCTAC
TGCGGACTACATGTGTGACTTGTCGCAAGAGCTTCTAAGCCCTGCATCGA
CGCTGGAAGCTGCGGAAGGACAGAGTAGAGAACAGGAGGAAGAGGTTGTT
GGTTAA
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protein sequence of Ggra2084.t1

>Ggra2084.t1 ID=Ggra2084.t1|Name=Ggra2084.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=702bp
MNELIRLKKIAVNAISLADMYRYVAVLLLSRTTGFRFEKGITVFRQAGNI
APCLERIRFIADNILAYSETGRGADGGTQWNAQKDQTRQLSEFDNLAFRD
TRKVFFSSWNLLVTLNDDLYGTRASDIQVKMLSSRKADREGHPADAVADA
LFRIVLALRFRRRGAPQTQSVKNLVMTLMDGRGEEALNGCIVTSDRGYGK
QPFIEIMLEHGFGSVFVMPDHPLRVHPFVALSYLNPARDDLEEDAVASYR
HTGHRKEAISEGTPSASRNTDAIMTENFPAPGAAENRTADIFSRRQPHPY
SSLGTRVGQKKVTAIAARENGTDKFPKVLRFIPGEEHGALTLKRTTEKLI
SEHCEILTLGERCADWCVPRQFRVTGTNARSVLMSSDIVLSALGLPSIQS
NGERTTEDWFYLFCWSWFSSKVSTEAMMRSTANENAVIGSLKSMNCVEAV
FEVGMLALKNCPYLACSPDAIAIIDIQSFGQWSENEEAVLPGHHGVCVVA
SVEIKARVASSSVGEALNLAMTDIVFCEVGDDCFRKYVPKEHMTQVLHQL
LVLGLRFAVYVAAAKSGFLYTVVGKCSAAVLQLCRDELATITAPAIQWAY
ETVNVIPEFVKLDQRELQKIVSQTIKELAVNSLSGWRMFERQDLLESSQT
FRCLESCLNLLNKVQATADYMCDLSQELLSPASTLEAAEGQSREQEEEVV
G*
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mRNA from alignment at tig00000900_pilon:159936..162399+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2084.t1 ID=Ggra2084.t1|Name=Ggra2084.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2464bp|location=Sequence derived from alignment at tig00000900_pilon:159936..162399+ (Gracilaria gracilis GNS1m male)
ATGAACGAGCTAATCAGACTAAAGAAAATTGCCGTGAACGCCATCAGTCT
TGCAGACATGTACCGGTATGTAGCGGTGCTTTTGTTGTCACGTACAACTG
GCTTTAGATTTGAGAAGGGCATCACCGTGTTTCGACAGGCAGGAAACATT
GCCCCCTGTCTGGAAAGAATAAGGTTTATTGCTGACAACATTTTAGCCTA
CTCCGAAACTGGTAGAGGGGCAGACGGTGGTACGCAGTGGAATGCTCAGA
AAGATCAAACAAGGCAGTTGTCTGAATTTGATAACCTTGCTTTCAGAGAC
ACCAGAAAAGTATTCTTTTCTTCTTGGAACCTTCTCGTCACTCTAAATGA
CGATTTATACGGTACTCGGGCATCGGATATTCAAGTAAAAATGCTCAGCT
CACGTAAGGCGGACCGAGAGGGTCACCCCGCAGATGCTGTTGCTGACGCT
CTCTTTCGAATCGTACTAGCCTTACGCTTTCGCCGGAGAGGTGCACCACA
AACGCAGTCCGTTAAAAATTTGGTAATGACGCTAATGGATGGGCGTGGTG
AGGAGGCTTTGAATGGGTGTATCGTAACCTCCGACCGTGGCTACGGCAAG
CAGCCATTTATTGAGATTATGCTTGAGCATGGCTTTGGCTCTGTCTTCGT
GATGCCAGATCATCCCCTTCGTGTGCACCCGTTTGTGGCACTTTCCTATC
TTAACCCAGCGCGGGATGATTTAGAGGAAGACGCTGTAGCAAGCTACAGG
CATACAGGGCACAGAAAGGAAGCCATTTCTGAAGGTACACCGTCTGCTTC
GAGGAATACTGATGCAATTATGACAGAGAATTTTCCCGCTCCAGGTGCAG
CTGAAAATAGAACTGCAGATATTTTTAGTCGGCGACAACCGCATCCGTAC
AGTACGACAGGAGAAGGGCCTTTGTCATTGATGACAAGCCGAGCCTTGGA
CCTGAGGCTTTCTTTGCCATCAGGATGCTAGGCTCCCTGGGCACAAGGGT
GGGACAGAAGAAGGTGACGGCAATTGCCGCTCGCGAGAATGGAACCGATA
AGTTCCCGAAGGTTTTGCGGTTTATGTATAAAGTACTGGTGTACAGGAGA
GTTTGAAGAGTTAGATTGCTGTCCTAAAAACAAACGTGATCATGGGCAAC
GCTTTGTTTAGGAATAGCCCAGGCGAGGAGCACGGAGCTCTAACTCTGAA
ACGTACTACTGAAAAACTCATTTCCGAGCATTGTGAAATCCTCACACTTG
GAGAACGATGCGCAGACTGGTGTGTACCCCGACAGTTTAGAGTAACTGGC
ACCAATGCGCGAAGTGTGCTCATGAGCAGTGACATTGTGCTTTCAGCACT
GGGTCTGCCATCGATTCAATCCAATGGCGAAAGAACGACTGAAGATTGGT
TTTACTTGTTCTGTTGGAGCTGGTTCAGTTCAAAAGTATCTACGGAAGCT
ATGATGAGGAGTACCGCTAACGAGAATGCTGTTATAGGGTCTCTGAAATC
GATGAATTGTGTTGAGGCTGTCTTCGAAGTGGGCATGCTTGCTCTTAAGA
ATTGCCCTTATCTTGCTTGCTCCCCTGACGCAATTGCAATAATTGACATT
CAGTCCTTTGGGCAGTGGTCCGAAAATGAAGAGGCAGTGCTCCCTGGTCA
TCACGGAGTTTGTGTGGTAGCATCCGTAGAGATTAAGGCGCGTGTAGCCT
CGTCAAGCGTAGGAGAAGCCCTGAACCTAGCAATGACGGATATTGTATTC
TGTGAAGTGGGTGATGACTGCTTTAGAAAGTATGTTCCGAAGGAACACAT
GACTCAAGTATTGCACCAACTACTGGTACTTGGTTTAAGATTTGCAGTTT
ATGTGGCAGCCGCTAAAAGCGGTTTCCTATATACAGTGGTCGGAAAATGT
TCTGCAGCAGTTTTACAGCTCTGCCGAGACGAGCTGGCGACGATAACGGC
CCCTGCAATTCAGTGGGCTTACGAAACCGTCAACGTGATTCCAGAGTTTG
TAAAACTGGACCAACGAGAGCTCGTACGTAGTAGACTTGCGTTTTGGAAG
GTGGTGCAAAGACATGTCTATGAAAATGGACCTTTTGTACCTCTGAAGCT
TTTCAAGCATGCAGCACTACGTTTTCTTTCGAAGTAAAAAGCTGGAGTCG
ATGGAGCCACACAGCAGAGAGCTATACTTTGCAGTTCAATTTCCCATTTC
AAATGGAAGCAGAAGATTGTCTCTCAAACAATCAAGGAGCTCGCTGTGAA
TTCTTTGTCCGGGTGGCGTATGTTTGAAAGACAAGATTTGCTCGAGTCTT
CTCAGACTTTTAGATGTTTAGAGAGCTGCCTTAATTTGCTCAATAAGGTT
CAGGCTACTGCGGACTACATGTGTGACTTGTCGCAAGAGCTTCTAAGCCC
TGCATCGACGCTGGAAGCTGCGGAAGGACAGAGTAGAGAACAGGAGGAAG
AGGTTGTTGGTTAA
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Coding sequence (CDS) from alignment at tig00000900_pilon:159936..162399+

>Ggra2084.t1 ID=Ggra2084.t1|Name=Ggra2084.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2106bp|location=Sequence derived from alignment at tig00000900_pilon:159936..162399+ (Gracilaria gracilis GNS1m male)
ATGAACGAGCTAATCAGACTAAAGAAAATTGCCGTGAACGCCATCAGTCT
TGCAGACATGTACCGGTATGTAGCGGTGCTTTTGTTGTCACGTACAACTG
GCTTTAGATTTGAGAAGGGCATCACCGTGTTTCGACAGGCAGGAAACATT
GCCCCCTGTCTGGAAAGAATAAGGTTTATTGCTGACAACATTTTAGCCTA
CTCCGAAACTGGTAGAGGGGCAGACGGTGGTACGCAGTGGAATGCTCAGA
AAGATCAAACAAGGCAGTTGTCTGAATTTGATAACCTTGCTTTCAGAGAC
ACCAGAAAAGTATTCTTTTCTTCTTGGAACCTTCTCGTCACTCTAAATGA
CGATTTATACGGTACTCGGGCATCGGATATTCAAGTAAAAATGCTCAGCT
CACGTAAGGCGGACCGAGAGGGTCACCCCGCAGATGCTGTTGCTGACGCT
CTCTTTCGAATCGTACTAGCCTTACGCTTTCGCCGGAGAGGTGCACCACA
AACGCAGTCCGTTAAAAATTTGGTAATGACGCTAATGGATGGGCGTGGTG
AGGAGGCTTTGAATGGGTGTATCGTAACCTCCGACCGTGGCTACGGCAAG
CAGCCATTTATTGAGATTATGCTTGAGCATGGCTTTGGCTCTGTCTTCGT
GATGCCAGATCATCCCCTTCGTGTGCACCCGTTTGTGGCACTTTCCTATC
TTAACCCAGCGCGGGATGATTTAGAGGAAGACGCTGTAGCAAGCTACAGG
CATACAGGGCACAGAAAGGAAGCCATTTCTGAAGGTACACCGTCTGCTTC
GAGGAATACTGATGCAATTATGACAGAGAATTTTCCCGCTCCAGGTGCAG
CTGAAAATAGAACTGCAGATATTTTTAGTCGGCGACAACCGCATCCGTAC
AGCTCCCTGGGCACAAGGGTGGGACAGAAGAAGGTGACGGCAATTGCCGC
TCGCGAGAATGGAACCGATAAGTTCCCGAAGGTTTTGCGGTTTATCCCAG
GCGAGGAGCACGGAGCTCTAACTCTGAAACGTACTACTGAAAAACTCATT
TCCGAGCATTGTGAAATCCTCACACTTGGAGAACGATGCGCAGACTGGTG
TGTACCCCGACAGTTTAGAGTAACTGGCACCAATGCGCGAAGTGTGCTCA
TGAGCAGTGACATTGTGCTTTCAGCACTGGGTCTGCCATCGATTCAATCC
AATGGCGAAAGAACGACTGAAGATTGGTTTTACTTGTTCTGTTGGAGCTG
GTTCAGTTCAAAAGTATCTACGGAAGCTATGATGAGGAGTACCGCTAACG
AGAATGCTGTTATAGGGTCTCTGAAATCGATGAATTGTGTTGAGGCTGTC
TTCGAAGTGGGCATGCTTGCTCTTAAGAATTGCCCTTATCTTGCTTGCTC
CCCTGACGCAATTGCAATAATTGACATTCAGTCCTTTGGGCAGTGGTCCG
AAAATGAAGAGGCAGTGCTCCCTGGTCATCACGGAGTTTGTGTGGTAGCA
TCCGTAGAGATTAAGGCGCGTGTAGCCTCGTCAAGCGTAGGAGAAGCCCT
GAACCTAGCAATGACGGATATTGTATTCTGTGAAGTGGGTGATGACTGCT
TTAGAAAGTATGTTCCGAAGGAACACATGACTCAAGTATTGCACCAACTA
CTGGTACTTGGTTTAAGATTTGCAGTTTATGTGGCAGCCGCTAAAAGCGG
TTTCCTATATACAGTGGTCGGAAAATGTTCTGCAGCAGTTTTACAGCTCT
GCCGAGACGAGCTGGCGACGATAACGGCCCCTGCAATTCAGTGGGCTTAC
GAAACCGTCAACGTGATTCCAGAGTTTGTAAAACTGGACCAACGAGAGCT
CCAGAAGATTGTCTCTCAAACAATCAAGGAGCTCGCTGTGAATTCTTTGT
CCGGGTGGCGTATGTTTGAAAGACAAGATTTGCTCGAGTCTTCTCAGACT
TTTAGATGTTTAGAGAGCTGCCTTAATTTGCTCAATAAGGTTCAGGCTAC
TGCGGACTACATGTGTGACTTGTCGCAAGAGCTTCTAAGCCCTGCATCGA
CGCTGGAAGCTGCGGAAGGACAGAGTAGAGAACAGGAGGAAGAGGTTGTT
GGTTAA
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