Ggra2082.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2082.t1
Unique NameGgra2082.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length410
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:136291..137520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2082Ggra2082Gracilaria gracilis GNS1m malegenetig00000900_pilon 136291..137520 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2082.t1.stop1Ggra2082.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 136291..136293 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2082.t1.CDS1Ggra2082.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 136291..137520 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2082.t1.exon1Ggra2082.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 136291..137520 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2082.t1.start1Ggra2082.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 137518..137520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2082.t1Ggra2082.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 136291..137520 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2082.t1 ID=Ggra2082.t1|Name=Ggra2082.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=410bp
MVLLPLKAQFVSLMSALLSFAAERALVNASRVHSTRRHSTRLQDGFPVAV
RPALTRRSRLRFVAATIFLGLEIALSFLSDPDVRKRPSAHRCMAMESLLA
RSGPPFTDPLSDIALLRCLRIDNGMVTLHAGNYSVSSQDVLCASAPLLRF
PARNERDQSIAEATPPSPARPFPDPLLFCEKQLCIVFRTLSSSRANLSTT
VRFSDFIYSSELRQLQQEPFPIPYLDTSLFFTANASTLFPQLARRLLAAA
DENINDPIELRRRAFLGAERATCNFPESAAATRVPASLLAVAAVLWATAA
AAAAATAVCGRRHVLCDVANPLHWATRVTRREGAPAVGNGEPMLVAVREE
KRHVMYVEPAETRDATPTAVGWRALLAATRWWRTERPCNCEEEQSSATSE
HKLSHGSNA*
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spliced messenger RNA

>Ggra2082.t1 ID=Ggra2082.t1|Name=Ggra2082.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00000900_pilon:136291..137520- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTTCTGCCGCTCAAGGCACAGTTCGTGAGCCTGATGTCCGCGCT
GCTTTCCTTCGCAGCCGAGCGCGCGTTAGTGAACGCATCCCGTGTGCATT
CAACGCGCCGTCACTCTACGCGGCTGCAGGATGGCTTTCCCGTCGCCGTT
CGACCGGCGCTGACGCGGCGGTCGCGACTGCGCTTTGTCGCCGCCACGAT
CTTCCTCGGTCTGGAGATCGCACTGTCCTTCCTGTCCGATCCGGACGTGC
GCAAGCGTCCGTCGGCGCATCGTTGCATGGCGATGGAATCGCTGTTGGCG
CGCTCTGGTCCGCCATTCACCGATCCGCTCTCCGACATCGCGCTGCTGCG
TTGCCTACGCATCGACAATGGCATGGTCACGCTGCACGCCGGAAACTACA
GTGTGAGCTCCCAGGACGTTCTGTGCGCGTCTGCGCCGCTGCTACGCTTC
CCTGCGCGCAACGAACGCGACCAGTCCATCGCCGAGGCCACCCCACCGTC
GCCGGCGCGCCCCTTCCCTGACCCGCTGCTGTTCTGTGAGAAGCAGCTTT
GCATCGTGTTCCGCACGCTGTCTTCATCGCGTGCCAATCTTTCTACCACC
GTTCGCTTTTCAGATTTCATCTACAGCTCCGAGCTGCGCCAGCTGCAGCA
GGAGCCCTTCCCCATCCCGTACCTGGACACCTCATTGTTCTTCACTGCGA
ACGCCTCCACGCTGTTCCCTCAACTAGCACGCCGCCTGCTGGCCGCAGCC
GACGAAAACATCAACGACCCTATCGAGCTGCGCCGCCGCGCATTCCTCGG
CGCCGAACGCGCCACGTGCAATTTCCCAGAGAGCGCGGCGGCGACGCGAG
TGCCAGCGTCACTGCTAGCAGTCGCCGCCGTGCTGTGGGCGACCGCAGCG
GCCGCCGCGGCTGCCACGGCTGTCTGCGGGCGTCGGCACGTGCTCTGCGA
CGTCGCCAACCCGCTGCACTGGGCCACGCGCGTGACGCGCCGCGAGGGCG
CGCCCGCCGTGGGGAACGGCGAGCCCATGCTCGTGGCTGTGCGGGAGGAG
AAGCGCCACGTCATGTACGTCGAGCCGGCGGAGACGCGCGACGCGACGCC
GACGGCGGTTGGCTGGAGGGCGCTACTCGCGGCAACGCGCTGGTGGCGCA
CCGAGAGGCCGTGCAACTGCGAGGAAGAGCAAAGCAGTGCCACGTCAGAG
CACAAGTTGTCACACGGCAGCAATGCATGA
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protein sequence of Ggra2082.t1

>Ggra2082.t1 ID=Ggra2082.t1|Name=Ggra2082.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=410bp
MVLLPLKAQFVSLMSALLSFAAERALVNASRVHSTRRHSTRLQDGFPVAV
RPALTRRSRLRFVAATIFLGLEIALSFLSDPDVRKRPSAHRCMAMESLLA
RSGPPFTDPLSDIALLRCLRIDNGMVTLHAGNYSVSSQDVLCASAPLLRF
PARNERDQSIAEATPPSPARPFPDPLLFCEKQLCIVFRTLSSSRANLSTT
VRFSDFIYSSELRQLQQEPFPIPYLDTSLFFTANASTLFPQLARRLLAAA
DENINDPIELRRRAFLGAERATCNFPESAAATRVPASLLAVAAVLWATAA
AAAAATAVCGRRHVLCDVANPLHWATRVTRREGAPAVGNGEPMLVAVREE
KRHVMYVEPAETRDATPTAVGWRALLAATRWWRTERPCNCEEEQSSATSE
HKLSHGSNA*
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mRNA from alignment at tig00000900_pilon:136291..137520-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2082.t1 ID=Ggra2082.t1|Name=Ggra2082.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00000900_pilon:136291..137520- (Gracilaria gracilis GNS1m male)
ATGGTGCTTCTGCCGCTCAAGGCACAGTTCGTGAGCCTGATGTCCGCGCT
GCTTTCCTTCGCAGCCGAGCGCGCGTTAGTGAACGCATCCCGTGTGCATT
CAACGCGCCGTCACTCTACGCGGCTGCAGGATGGCTTTCCCGTCGCCGTT
CGACCGGCGCTGACGCGGCGGTCGCGACTGCGCTTTGTCGCCGCCACGAT
CTTCCTCGGTCTGGAGATCGCACTGTCCTTCCTGTCCGATCCGGACGTGC
GCAAGCGTCCGTCGGCGCATCGTTGCATGGCGATGGAATCGCTGTTGGCG
CGCTCTGGTCCGCCATTCACCGATCCGCTCTCCGACATCGCGCTGCTGCG
TTGCCTACGCATCGACAATGGCATGGTCACGCTGCACGCCGGAAACTACA
GTGTGAGCTCCCAGGACGTTCTGTGCGCGTCTGCGCCGCTGCTACGCTTC
CCTGCGCGCAACGAACGCGACCAGTCCATCGCCGAGGCCACCCCACCGTC
GCCGGCGCGCCCCTTCCCTGACCCGCTGCTGTTCTGTGAGAAGCAGCTTT
GCATCGTGTTCCGCACGCTGTCTTCATCGCGTGCCAATCTTTCTACCACC
GTTCGCTTTTCAGATTTCATCTACAGCTCCGAGCTGCGCCAGCTGCAGCA
GGAGCCCTTCCCCATCCCGTACCTGGACACCTCATTGTTCTTCACTGCGA
ACGCCTCCACGCTGTTCCCTCAACTAGCACGCCGCCTGCTGGCCGCAGCC
GACGAAAACATCAACGACCCTATCGAGCTGCGCCGCCGCGCATTCCTCGG
CGCCGAACGCGCCACGTGCAATTTCCCAGAGAGCGCGGCGGCGACGCGAG
TGCCAGCGTCACTGCTAGCAGTCGCCGCCGTGCTGTGGGCGACCGCAGCG
GCCGCCGCGGCTGCCACGGCTGTCTGCGGGCGTCGGCACGTGCTCTGCGA
CGTCGCCAACCCGCTGCACTGGGCCACGCGCGTGACGCGCCGCGAGGGCG
CGCCCGCCGTGGGGAACGGCGAGCCCATGCTCGTGGCTGTGCGGGAGGAG
AAGCGCCACGTCATGTACGTCGAGCCGGCGGAGACGCGCGACGCGACGCC
GACGGCGGTTGGCTGGAGGGCGCTACTCGCGGCAACGCGCTGGTGGCGCA
CCGAGAGGCCGTGCAACTGCGAGGAAGAGCAAAGCAGTGCCACGTCAGAG
CACAAGTTGTCACACGGCAGCAATGCATGA
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Coding sequence (CDS) from alignment at tig00000900_pilon:136291..137520-

>Ggra2082.t1 ID=Ggra2082.t1|Name=Ggra2082.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1230bp|location=Sequence derived from alignment at tig00000900_pilon:136291..137520- (Gracilaria gracilis GNS1m male)
ATGGTGCTTCTGCCGCTCAAGGCACAGTTCGTGAGCCTGATGTCCGCGCT
GCTTTCCTTCGCAGCCGAGCGCGCGTTAGTGAACGCATCCCGTGTGCATT
CAACGCGCCGTCACTCTACGCGGCTGCAGGATGGCTTTCCCGTCGCCGTT
CGACCGGCGCTGACGCGGCGGTCGCGACTGCGCTTTGTCGCCGCCACGAT
CTTCCTCGGTCTGGAGATCGCACTGTCCTTCCTGTCCGATCCGGACGTGC
GCAAGCGTCCGTCGGCGCATCGTTGCATGGCGATGGAATCGCTGTTGGCG
CGCTCTGGTCCGCCATTCACCGATCCGCTCTCCGACATCGCGCTGCTGCG
TTGCCTACGCATCGACAATGGCATGGTCACGCTGCACGCCGGAAACTACA
GTGTGAGCTCCCAGGACGTTCTGTGCGCGTCTGCGCCGCTGCTACGCTTC
CCTGCGCGCAACGAACGCGACCAGTCCATCGCCGAGGCCACCCCACCGTC
GCCGGCGCGCCCCTTCCCTGACCCGCTGCTGTTCTGTGAGAAGCAGCTTT
GCATCGTGTTCCGCACGCTGTCTTCATCGCGTGCCAATCTTTCTACCACC
GTTCGCTTTTCAGATTTCATCTACAGCTCCGAGCTGCGCCAGCTGCAGCA
GGAGCCCTTCCCCATCCCGTACCTGGACACCTCATTGTTCTTCACTGCGA
ACGCCTCCACGCTGTTCCCTCAACTAGCACGCCGCCTGCTGGCCGCAGCC
GACGAAAACATCAACGACCCTATCGAGCTGCGCCGCCGCGCATTCCTCGG
CGCCGAACGCGCCACGTGCAATTTCCCAGAGAGCGCGGCGGCGACGCGAG
TGCCAGCGTCACTGCTAGCAGTCGCCGCCGTGCTGTGGGCGACCGCAGCG
GCCGCCGCGGCTGCCACGGCTGTCTGCGGGCGTCGGCACGTGCTCTGCGA
CGTCGCCAACCCGCTGCACTGGGCCACGCGCGTGACGCGCCGCGAGGGCG
CGCCCGCCGTGGGGAACGGCGAGCCCATGCTCGTGGCTGTGCGGGAGGAG
AAGCGCCACGTCATGTACGTCGAGCCGGCGGAGACGCGCGACGCGACGCC
GACGGCGGTTGGCTGGAGGGCGCTACTCGCGGCAACGCGCTGGTGGCGCA
CCGAGAGGCCGTGCAACTGCGAGGAAGAGCAAAGCAGTGCCACGTCAGAG
CACAAGTTGTCACACGGCAGCAATGCATGA
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