Ggra2080.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2080.t1
Unique Name	Ggra2080.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	749

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:117406..119652 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMN092CT
PFAMs	BK_channel_a,Ion_trans_2
Max annot lvl	2759\|Eukaryota
Evalue	1.29e-06
EggNOG OGs	KOG1420@1\|root,KOG1420@2759\|Eukaryota
Description	large conductance calcium-activated potassium channel activity
COG category	P

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2080	Ggra2080	Gracilaria gracilis GNS1m male	gene	tig00000900_pilon 117406..122319 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2080.t1.stop1	Ggra2080.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000900_pilon 117406..117408 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2080.t1.CDS1	Ggra2080.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 117406..119652 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2080.t1.exon1	Ggra2080.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 117406..119652 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2080.t1.start1	Ggra2080.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000900_pilon 119650..119652 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2080.t1	Ggra2080.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000900_pilon 117406..119652 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000900_pilon:117406..119652-
coding sequence from alignment at tig00000900_pilon:117406..119652-

mRNA sequence

>Ggra2080.t1 ID=Ggra2080.t1|Name=Ggra2080.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=749bp
LADLSTAARSSSNTQPIPAVSGSSSDGRGLAVEEKEIRKTSSRQKRHHVS
FENQGHGVPRKSRKAQVTKPRSQPAKAVNEESVIMFHGDQELPMRLTGHV
VVCTIGRMALQNLGYFLQQVNVERSFSRGKAPVVAICSRLSEEEEADLEV
YASNGGIREPDRRRSPTERNQRSSAEGEPHQPSLVVIQGNSLSVKTLRRA
QFEKAKAVVILACEDVNDIDHMDAKAIFTVMTLDYLLGEDSETFVCTMLD
AEESMQLLRAPAHPRRRGAVLGRVPEENMELAVTTSNAEKGRRRHSAKNR
LGRFGGNFKNARNSRQRFPSRTLSYGAITAGGRVSRSVSFMGDRHFAAGV
AGYRNFAQGLSQNSFGAREPSTTSFAALQRVRDGDDGALMQNPSLAGDSA
FRILLGPSANNGFGSTDTLRDENGKRRAMNGLRHGFRDESFEKQRYASGE
MVISSTYMSLLIREFAMPGLIAVVRKIFGATIGKHTRPRRSWIRTVSIPA
KWIGDGQRTYREVFEVLIGYGAIALGLYRSGNANVRVQVVGGTECSSTSL
YSSRTPSFGSFSGPNIEEGSNDSLDRDFTARGRDSRTQIPDLTDDVPPSE
DEEEKNGNNERRGLLGSRAGPSNGGYGATGTQNIYVAGSLSGNSDAGSGD
GRDMEDAVHIPPELYRMAESVVSGQGASSGWSTGGYQNEVHHKYTCPSSR
RTTTYRELPGGDNVLPYVYTNPEAFTLVSDRDAVYVLVSPNVQLPEEW*

spliced messenger RNA

>Ggra2080.t1 ID=Ggra2080.t1|Name=Ggra2080.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2247bp|location=Sequence derived from alignment at tig00000900_pilon:117406..119652- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGCCGATCTCAGTACCGCCGCGCGAAGCAGTTCGAATACTCAGCCCAT
TCCTGCGGTATCAGGTTCTTCGAGTGATGGTCGCGGTCTTGCTGTTGAGG
AGAAAGAGATAAGAAAAACATCCTCTCGTCAAAAAAGACACCATGTTTCC
TTCGAGAATCAAGGTCACGGGGTCCCTCGCAAATCTAGAAAGGCCCAAGT
CACGAAACCACGAAGCCAACCAGCGAAAGCTGTCAATGAGGAATCAGTGA
TCATGTTTCACGGGGATCAAGAGCTGCCTATGAGGCTTACCGGTCATGTT
GTGGTGTGTACGATCGGGCGCATGGCTCTTCAAAACCTGGGTTACTTCTT
GCAGCAGGTTAATGTCGAGAGGAGCTTTTCAAGGGGCAAAGCCCCCGTGG
TCGCCATTTGCTCCCGCCTTTCTGAGGAAGAAGAAGCGGACTTGGAAGTT
TATGCGTCCAATGGCGGTATCCGAGAACCTGACAGGCGTCGATCTCCGAC
GGAGAGGAACCAAAGGTCCTCAGCGGAAGGGGAACCGCATCAGCCATCGT
TGGTAGTAATCCAAGGAAATTCTCTCAGTGTGAAGACGTTGCGGCGAGCT
CAATTTGAGAAGGCTAAAGCAGTGGTCATTCTGGCATGTGAGGATGTAAA
CGATATAGACCACATGGACGCAAAGGCCATCTTCACAGTCATGACTCTGG
ATTATCTTCTGGGAGAAGACTCGGAGACCTTTGTATGCACAATGCTGGAT
GCTGAGGAGTCTATGCAGCTTCTAAGGGCGCCGGCACATCCAAGACGTCG
TGGAGCTGTTTTGGGAAGAGTACCTGAAGAAAACATGGAGCTCGCCGTAA
CAACGTCAAATGCGGAAAAAGGTCGCCGAAGGCACTCGGCGAAGAACCGA
CTGGGAAGGTTCGGTGGAAACTTCAAAAATGCGCGGAACTCGAGGCAGCG
GTTTCCAAGTCGAACACTCAGTTATGGCGCTATAACTGCTGGCGGACGTG
TATCTCGATCTGTCTCATTTATGGGGGATAGACACTTTGCAGCAGGAGTC
GCGGGCTATAGAAATTTTGCCCAAGGCTTGTCGCAGAATAGTTTTGGTGC
TCGAGAACCGTCCACAACTTCATTTGCAGCTTTGCAACGAGTTCGAGATG
GGGATGACGGTGCACTGATGCAAAACCCTTCGCTGGCGGGGGACTCAGCG
TTCAGAATTCTCCTGGGCCCATCTGCGAATAATGGATTTGGAAGCACCGA
CACACTGCGGGATGAAAACGGCAAGAGGCGGGCTATGAATGGATTACGGC
ACGGTTTCCGAGATGAATCGTTTGAGAAGCAAAGATACGCTTCTGGGGAG
ATGGTAATCTCATCAACGTACATGTCGTTGCTTATCCGAGAATTCGCGAT
GCCCGGCCTCATAGCGGTCGTGAGAAAGATTTTTGGGGCGACAATCGGAA
AGCATACAAGACCAAGACGAAGTTGGATTCGAACCGTAAGCATCCCTGCC
AAGTGGATTGGGGACGGGCAACGGACATACCGGGAAGTATTTGAAGTCCT
AATCGGATACGGTGCGATAGCATTGGGATTGTATCGCTCTGGAAATGCAA
ATGTCCGTGTACAGGTTGTGGGTGGCACGGAGTGCAGCTCAACTTCGTTG
TACAGCAGCAGAACCCCATCATTTGGAAGCTTTTCCGGGCCAAACATTGA
AGAGGGTTCGAATGACTCACTCGATAGGGATTTCACAGCGCGCGGAAGGG
ATTCACGCACGCAGATTCCCGATCTCACTGATGACGTGCCGCCATCGGAG
GACGAGGAAGAGAAGAATGGTAATAACGAACGAAGAGGGCTGTTGGGCAG
TCGTGCCGGACCGAGCAATGGTGGATATGGGGCTACAGGGACGCAGAACA
TATATGTGGCTGGTTCATTGTCCGGCAATTCTGATGCCGGAAGTGGTGAT
GGTCGGGATATGGAGGATGCTGTACACATTCCGCCCGAGTTGTACAGAAT
GGCGGAAAGCGTTGTATCTGGACAGGGTGCATCGTCTGGGTGGAGTACTG
GAGGCTATCAAAATGAGGTTCACCACAAGTACACGTGCCCTTCATCAAGA
CGAACTACAACGTACAGAGAACTGCCCGGTGGGGACAACGTACTACCCTA
TGTGTATACCAATCCGGAAGCGTTTACGTTAGTTTCGGACCGGGATGCGG
TATACGTTCTGGTGTCGCCGAATGTTCAGCTGCCAGAAGAGTGGTAG

protein sequence of Ggra2080.t1

>Ggra2080.t1 ID=Ggra2080.t1|Name=Ggra2080.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=749bp
LADLSTAARSSSNTQPIPAVSGSSSDGRGLAVEEKEIRKTSSRQKRHHVS
FENQGHGVPRKSRKAQVTKPRSQPAKAVNEESVIMFHGDQELPMRLTGHV
VVCTIGRMALQNLGYFLQQVNVERSFSRGKAPVVAICSRLSEEEEADLEV
YASNGGIREPDRRRSPTERNQRSSAEGEPHQPSLVVIQGNSLSVKTLRRA
QFEKAKAVVILACEDVNDIDHMDAKAIFTVMTLDYLLGEDSETFVCTMLD
AEESMQLLRAPAHPRRRGAVLGRVPEENMELAVTTSNAEKGRRRHSAKNR
LGRFGGNFKNARNSRQRFPSRTLSYGAITAGGRVSRSVSFMGDRHFAAGV
AGYRNFAQGLSQNSFGAREPSTTSFAALQRVRDGDDGALMQNPSLAGDSA
FRILLGPSANNGFGSTDTLRDENGKRRAMNGLRHGFRDESFEKQRYASGE
MVISSTYMSLLIREFAMPGLIAVVRKIFGATIGKHTRPRRSWIRTVSIPA
KWIGDGQRTYREVFEVLIGYGAIALGLYRSGNANVRVQVVGGTECSSTSL
YSSRTPSFGSFSGPNIEEGSNDSLDRDFTARGRDSRTQIPDLTDDVPPSE
DEEEKNGNNERRGLLGSRAGPSNGGYGATGTQNIYVAGSLSGNSDAGSGD
GRDMEDAVHIPPELYRMAESVVSGQGASSGWSTGGYQNEVHHKYTCPSSR
RTTTYRELPGGDNVLPYVYTNPEAFTLVSDRDAVYVLVSPNVQLPEEW*

mRNA from alignment at tig00000900_pilon:117406..119652-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2080.t1 ID=Ggra2080.t1|Name=Ggra2080.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2247bp|location=Sequence derived from alignment at tig00000900_pilon:117406..119652- (Gracilaria gracilis GNS1m male)
TTGGCCGATCTCAGTACCGCCGCGCGAAGCAGTTCGAATACTCAGCCCAT
TCCTGCGGTATCAGGTTCTTCGAGTGATGGTCGCGGTCTTGCTGTTGAGG
AGAAAGAGATAAGAAAAACATCCTCTCGTCAAAAAAGACACCATGTTTCC
TTCGAGAATCAAGGTCACGGGGTCCCTCGCAAATCTAGAAAGGCCCAAGT
CACGAAACCACGAAGCCAACCAGCGAAAGCTGTCAATGAGGAATCAGTGA
TCATGTTTCACGGGGATCAAGAGCTGCCTATGAGGCTTACCGGTCATGTT
GTGGTGTGTACGATCGGGCGCATGGCTCTTCAAAACCTGGGTTACTTCTT
GCAGCAGGTTAATGTCGAGAGGAGCTTTTCAAGGGGCAAAGCCCCCGTGG
TCGCCATTTGCTCCCGCCTTTCTGAGGAAGAAGAAGCGGACTTGGAAGTT
TATGCGTCCAATGGCGGTATCCGAGAACCTGACAGGCGTCGATCTCCGAC
GGAGAGGAACCAAAGGTCCTCAGCGGAAGGGGAACCGCATCAGCCATCGT
TGGTAGTAATCCAAGGAAATTCTCTCAGTGTGAAGACGTTGCGGCGAGCT
CAATTTGAGAAGGCTAAAGCAGTGGTCATTCTGGCATGTGAGGATGTAAA
CGATATAGACCACATGGACGCAAAGGCCATCTTCACAGTCATGACTCTGG
ATTATCTTCTGGGAGAAGACTCGGAGACCTTTGTATGCACAATGCTGGAT
GCTGAGGAGTCTATGCAGCTTCTAAGGGCGCCGGCACATCCAAGACGTCG
TGGAGCTGTTTTGGGAAGAGTACCTGAAGAAAACATGGAGCTCGCCGTAA
CAACGTCAAATGCGGAAAAAGGTCGCCGAAGGCACTCGGCGAAGAACCGA
CTGGGAAGGTTCGGTGGAAACTTCAAAAATGCGCGGAACTCGAGGCAGCG
GTTTCCAAGTCGAACACTCAGTTATGGCGCTATAACTGCTGGCGGACGTG
TATCTCGATCTGTCTCATTTATGGGGGATAGACACTTTGCAGCAGGAGTC
GCGGGCTATAGAAATTTTGCCCAAGGCTTGTCGCAGAATAGTTTTGGTGC
TCGAGAACCGTCCACAACTTCATTTGCAGCTTTGCAACGAGTTCGAGATG
GGGATGACGGTGCACTGATGCAAAACCCTTCGCTGGCGGGGGACTCAGCG
TTCAGAATTCTCCTGGGCCCATCTGCGAATAATGGATTTGGAAGCACCGA
CACACTGCGGGATGAAAACGGCAAGAGGCGGGCTATGAATGGATTACGGC
ACGGTTTCCGAGATGAATCGTTTGAGAAGCAAAGATACGCTTCTGGGGAG
ATGGTAATCTCATCAACGTACATGTCGTTGCTTATCCGAGAATTCGCGAT
GCCCGGCCTCATAGCGGTCGTGAGAAAGATTTTTGGGGCGACAATCGGAA
AGCATACAAGACCAAGACGAAGTTGGATTCGAACCGTAAGCATCCCTGCC
AAGTGGATTGGGGACGGGCAACGGACATACCGGGAAGTATTTGAAGTCCT
AATCGGATACGGTGCGATAGCATTGGGATTGTATCGCTCTGGAAATGCAA
ATGTCCGTGTACAGGTTGTGGGTGGCACGGAGTGCAGCTCAACTTCGTTG
TACAGCAGCAGAACCCCATCATTTGGAAGCTTTTCCGGGCCAAACATTGA
AGAGGGTTCGAATGACTCACTCGATAGGGATTTCACAGCGCGCGGAAGGG
ATTCACGCACGCAGATTCCCGATCTCACTGATGACGTGCCGCCATCGGAG
GACGAGGAAGAGAAGAATGGTAATAACGAACGAAGAGGGCTGTTGGGCAG
TCGTGCCGGACCGAGCAATGGTGGATATGGGGCTACAGGGACGCAGAACA
TATATGTGGCTGGTTCATTGTCCGGCAATTCTGATGCCGGAAGTGGTGAT
GGTCGGGATATGGAGGATGCTGTACACATTCCGCCCGAGTTGTACAGAAT
GGCGGAAAGCGTTGTATCTGGACAGGGTGCATCGTCTGGGTGGAGTACTG
GAGGCTATCAAAATGAGGTTCACCACAAGTACACGTGCCCTTCATCAAGA
CGAACTACAACGTACAGAGAACTGCCCGGTGGGGACAACGTACTACCCTA
TGTGTATACCAATCCGGAAGCGTTTACGTTAGTTTCGGACCGGGATGCGG
TATACGTTCTGGTGTCGCCGAATGTTCAGCTGCCAGAAGAGTGGTAG

Coding sequence (CDS) from alignment at tig00000900_pilon:117406..119652-

>Ggra2080.t1 ID=Ggra2080.t1|Name=Ggra2080.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2247bp|location=Sequence derived from alignment at tig00000900_pilon:117406..119652- (Gracilaria gracilis GNS1m male)
TTGGCCGATCTCAGTACCGCCGCGCGAAGCAGTTCGAATACTCAGCCCAT
TCCTGCGGTATCAGGTTCTTCGAGTGATGGTCGCGGTCTTGCTGTTGAGG
AGAAAGAGATAAGAAAAACATCCTCTCGTCAAAAAAGACACCATGTTTCC
TTCGAGAATCAAGGTCACGGGGTCCCTCGCAAATCTAGAAAGGCCCAAGT
CACGAAACCACGAAGCCAACCAGCGAAAGCTGTCAATGAGGAATCAGTGA
TCATGTTTCACGGGGATCAAGAGCTGCCTATGAGGCTTACCGGTCATGTT
GTGGTGTGTACGATCGGGCGCATGGCTCTTCAAAACCTGGGTTACTTCTT
GCAGCAGGTTAATGTCGAGAGGAGCTTTTCAAGGGGCAAAGCCCCCGTGG
TCGCCATTTGCTCCCGCCTTTCTGAGGAAGAAGAAGCGGACTTGGAAGTT
TATGCGTCCAATGGCGGTATCCGAGAACCTGACAGGCGTCGATCTCCGAC
GGAGAGGAACCAAAGGTCCTCAGCGGAAGGGGAACCGCATCAGCCATCGT
TGGTAGTAATCCAAGGAAATTCTCTCAGTGTGAAGACGTTGCGGCGAGCT
CAATTTGAGAAGGCTAAAGCAGTGGTCATTCTGGCATGTGAGGATGTAAA
CGATATAGACCACATGGACGCAAAGGCCATCTTCACAGTCATGACTCTGG
ATTATCTTCTGGGAGAAGACTCGGAGACCTTTGTATGCACAATGCTGGAT
GCTGAGGAGTCTATGCAGCTTCTAAGGGCGCCGGCACATCCAAGACGTCG
TGGAGCTGTTTTGGGAAGAGTACCTGAAGAAAACATGGAGCTCGCCGTAA
CAACGTCAAATGCGGAAAAAGGTCGCCGAAGGCACTCGGCGAAGAACCGA
CTGGGAAGGTTCGGTGGAAACTTCAAAAATGCGCGGAACTCGAGGCAGCG
GTTTCCAAGTCGAACACTCAGTTATGGCGCTATAACTGCTGGCGGACGTG
TATCTCGATCTGTCTCATTTATGGGGGATAGACACTTTGCAGCAGGAGTC
GCGGGCTATAGAAATTTTGCCCAAGGCTTGTCGCAGAATAGTTTTGGTGC
TCGAGAACCGTCCACAACTTCATTTGCAGCTTTGCAACGAGTTCGAGATG
GGGATGACGGTGCACTGATGCAAAACCCTTCGCTGGCGGGGGACTCAGCG
TTCAGAATTCTCCTGGGCCCATCTGCGAATAATGGATTTGGAAGCACCGA
CACACTGCGGGATGAAAACGGCAAGAGGCGGGCTATGAATGGATTACGGC
ACGGTTTCCGAGATGAATCGTTTGAGAAGCAAAGATACGCTTCTGGGGAG
ATGGTAATCTCATCAACGTACATGTCGTTGCTTATCCGAGAATTCGCGAT
GCCCGGCCTCATAGCGGTCGTGAGAAAGATTTTTGGGGCGACAATCGGAA
AGCATACAAGACCAAGACGAAGTTGGATTCGAACCGTAAGCATCCCTGCC
AAGTGGATTGGGGACGGGCAACGGACATACCGGGAAGTATTTGAAGTCCT
AATCGGATACGGTGCGATAGCATTGGGATTGTATCGCTCTGGAAATGCAA
ATGTCCGTGTACAGGTTGTGGGTGGCACGGAGTGCAGCTCAACTTCGTTG
TACAGCAGCAGAACCCCATCATTTGGAAGCTTTTCCGGGCCAAACATTGA
AGAGGGTTCGAATGACTCACTCGATAGGGATTTCACAGCGCGCGGAAGGG
ATTCACGCACGCAGATTCCCGATCTCACTGATGACGTGCCGCCATCGGAG
GACGAGGAAGAGAAGAATGGTAATAACGAACGAAGAGGGCTGTTGGGCAG
TCGTGCCGGACCGAGCAATGGTGGATATGGGGCTACAGGGACGCAGAACA
TATATGTGGCTGGTTCATTGTCCGGCAATTCTGATGCCGGAAGTGGTGAT
GGTCGGGATATGGAGGATGCTGTACACATTCCGCCCGAGTTGTACAGAAT
GGCGGAAAGCGTTGTATCTGGACAGGGTGCATCGTCTGGGTGGAGTACTG
GAGGCTATCAAAATGAGGTTCACCACAAGTACACGTGCCCTTCATCAAGA
CGAACTACAACGTACAGAGAACTGCCCGGTGGGGACAACGTACTACCCTA
TGTGTATACCAATCCGGAAGCGTTTACGTTAGTTTCGGACCGGGATGCGG
TATACGTTCTGGTGTCGCCGAATGTTCAGCTGCCAGAAGAGTGGTAG