Ggra2070.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2070.t1
Unique NameGgra2070.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:58369..59025 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2070Ggra2070Gracilaria gracilis GNS1m malegenetig00000900_pilon 58369..59025 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2070.t1.stop1Ggra2070.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 58369..58371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2070.t1.CDS1Ggra2070.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 58369..59025 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2070.t1.exon1Ggra2070.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 58369..59025 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2070.t1.start1Ggra2070.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 59023..59025 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2070.t1Ggra2070.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 58369..59025 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2070.t1 ID=Ggra2070.t1|Name=Ggra2070.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=219bp
MPRVSGHIPIGGGQVVRPGMLRSWMFVPDVGIVTSEKATLVSGSYLEYNG
GKIRIRNGNVFIRFITRVGQNFAVNLQWKAKVEYVRSRSADYRDVNKVEL
EWLLQGSFGQGGIAVGLQLLYDKSAKFRRDRCFSQAKSRWFDRPQLVEAE
IPIRRLHGVMVMIEHSHRFFLMPMQHTEKVLRIWVAESDLHDEYVAINPG
DVKLGKLRILDGESRNLS*
back to top

spliced messenger RNA

>Ggra2070.t1 ID=Ggra2070.t1|Name=Ggra2070.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000900_pilon:58369..59025- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCGCGTGAGCGGTCACATACCCATTGGTGGTGGGCAAGTCGTGAG
ACCAGGCATGCTGCGCTCGTGGATGTTCGTACCAGACGTAGGTATAGTCA
CGAGTGAGAAGGCCACTCTTGTAAGCGGGTCATACTTGGAGTACAATGGT
GGTAAAATCCGTATCCGAAATGGAAATGTGTTCATCCGGTTCATCACGCG
AGTGGGGCAGAACTTTGCGGTTAATTTGCAATGGAAGGCCAAGGTAGAGT
ACGTGCGAAGTAGAAGTGCAGACTACAGAGATGTGAATAAGGTGGAGCTG
GAATGGCTGCTCCAGGGCTCCTTTGGGCAGGGCGGCATCGCTGTTGGTCT
CCAACTACTGTACGATAAGTCCGCCAAGTTCCGCCGTGACCGCTGCTTCT
CGCAGGCAAAATCAAGATGGTTCGATCGCCCCCAATTAGTGGAGGCGGAG
ATTCCAATCCGTAGGCTGCACGGTGTGATGGTGATGATCGAACACAGCCA
CCGCTTCTTCCTCATGCCCATGCAGCACACGGAGAAGGTACTGCGCATAT
GGGTGGCAGAGAGTGATCTCCATGATGAATACGTTGCCATCAATCCAGGC
GATGTGAAGCTCGGCAAATTGCGCATTCTGGACGGAGAGTCGAGGAACCT
ATCATAG
back to top

protein sequence of Ggra2070.t1

>Ggra2070.t1 ID=Ggra2070.t1|Name=Ggra2070.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=219bp
MPRVSGHIPIGGGQVVRPGMLRSWMFVPDVGIVTSEKATLVSGSYLEYNG
GKIRIRNGNVFIRFITRVGQNFAVNLQWKAKVEYVRSRSADYRDVNKVEL
EWLLQGSFGQGGIAVGLQLLYDKSAKFRRDRCFSQAKSRWFDRPQLVEAE
IPIRRLHGVMVMIEHSHRFFLMPMQHTEKVLRIWVAESDLHDEYVAINPG
DVKLGKLRILDGESRNLS*
back to top

mRNA from alignment at tig00000900_pilon:58369..59025-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2070.t1 ID=Ggra2070.t1|Name=Ggra2070.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000900_pilon:58369..59025- (Gracilaria gracilis GNS1m male)
ATGCCTCGCGTGAGCGGTCACATACCCATTGGTGGTGGGCAAGTCGTGAG
ACCAGGCATGCTGCGCTCGTGGATGTTCGTACCAGACGTAGGTATAGTCA
CGAGTGAGAAGGCCACTCTTGTAAGCGGGTCATACTTGGAGTACAATGGT
GGTAAAATCCGTATCCGAAATGGAAATGTGTTCATCCGGTTCATCACGCG
AGTGGGGCAGAACTTTGCGGTTAATTTGCAATGGAAGGCCAAGGTAGAGT
ACGTGCGAAGTAGAAGTGCAGACTACAGAGATGTGAATAAGGTGGAGCTG
GAATGGCTGCTCCAGGGCTCCTTTGGGCAGGGCGGCATCGCTGTTGGTCT
CCAACTACTGTACGATAAGTCCGCCAAGTTCCGCCGTGACCGCTGCTTCT
CGCAGGCAAAATCAAGATGGTTCGATCGCCCCCAATTAGTGGAGGCGGAG
ATTCCAATCCGTAGGCTGCACGGTGTGATGGTGATGATCGAACACAGCCA
CCGCTTCTTCCTCATGCCCATGCAGCACACGGAGAAGGTACTGCGCATAT
GGGTGGCAGAGAGTGATCTCCATGATGAATACGTTGCCATCAATCCAGGC
GATGTGAAGCTCGGCAAATTGCGCATTCTGGACGGAGAGTCGAGGAACCT
ATCATAG
back to top

Coding sequence (CDS) from alignment at tig00000900_pilon:58369..59025-

>Ggra2070.t1 ID=Ggra2070.t1|Name=Ggra2070.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=657bp|location=Sequence derived from alignment at tig00000900_pilon:58369..59025- (Gracilaria gracilis GNS1m male)
ATGCCTCGCGTGAGCGGTCACATACCCATTGGTGGTGGGCAAGTCGTGAG
ACCAGGCATGCTGCGCTCGTGGATGTTCGTACCAGACGTAGGTATAGTCA
CGAGTGAGAAGGCCACTCTTGTAAGCGGGTCATACTTGGAGTACAATGGT
GGTAAAATCCGTATCCGAAATGGAAATGTGTTCATCCGGTTCATCACGCG
AGTGGGGCAGAACTTTGCGGTTAATTTGCAATGGAAGGCCAAGGTAGAGT
ACGTGCGAAGTAGAAGTGCAGACTACAGAGATGTGAATAAGGTGGAGCTG
GAATGGCTGCTCCAGGGCTCCTTTGGGCAGGGCGGCATCGCTGTTGGTCT
CCAACTACTGTACGATAAGTCCGCCAAGTTCCGCCGTGACCGCTGCTTCT
CGCAGGCAAAATCAAGATGGTTCGATCGCCCCCAATTAGTGGAGGCGGAG
ATTCCAATCCGTAGGCTGCACGGTGTGATGGTGATGATCGAACACAGCCA
CCGCTTCTTCCTCATGCCCATGCAGCACACGGAGAAGGTACTGCGCATAT
GGGTGGCAGAGAGTGATCTCCATGATGAATACGTTGCCATCAATCCAGGC
GATGTGAAGCTCGGCAAATTGCGCATTCTGGACGGAGAGTCGAGGAACCT
ATCATAG
back to top