Ggra2068.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2068.t1
Unique Name	Ggra2068.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	284

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:54562..55413 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2068	Ggra2068	Gracilaria gracilis GNS1m male	gene	tig00000900_pilon 54562..55413 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2068.t1.start1	Ggra2068.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000900_pilon 54562..54564 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2068.t1.CDS1	Ggra2068.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 54562..55413 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2068.t1.exon1	Ggra2068.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 54562..55413 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2068.t1.stop1	Ggra2068.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000900_pilon 55411..55413 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2068.t1	Ggra2068.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000900_pilon 54562..55413 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000900_pilon:54562..55413+
coding sequence from alignment at tig00000900_pilon:54562..55413+

mRNA sequence

>Ggra2068.t1 ID=Ggra2068.t1|Name=Ggra2068.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=284bp
MASVQRPCDSETTPSAAPVLSENKDHNINSFEVGECYQSVFEGTCHDQTE
SHFHRPVTQAPVSKEVYSFFDNFNDSSVSLYTEVEEPEMEIHPACSILVN
HSIEKQRPLSNAAKEAQTIFDIEKYNPGPMRHIGSHFKSPVSFSKYVERV
RKHKVRQDGWRKELIGAAYGNHETGVFRSSLNLLITELKMVGGSSGVEAF
SVRNNGADRLYSSPWDSYVMRRYHEEVPGHMKIVTVDVYCDGTILAHSGS
QSARTLRIRFNNLKGRSRLLHEVGIAPRIDSDG*

spliced messenger RNA

>Ggra2068.t1 ID=Ggra2068.t1|Name=Ggra2068.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00000900_pilon:54562..55413+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCCGTTCAACGTCCATGCGACTCCGAAACAACTCCATCCGCAGC
ACCTGTATTGTCGGAAAATAAGGACCATAACATAAACTCATTCGAAGTGG
GCGAATGCTACCAGTCCGTTTTTGAAGGGACATGTCACGACCAAACCGAA
AGTCATTTCCATCGCCCTGTGACTCAAGCTCCCGTGTCGAAGGAGGTGTA
TTCGTTCTTTGACAACTTTAATGACTCGTCAGTCTCTCTTTACACGGAGG
TTGAAGAGCCAGAAATGGAGATCCATCCGGCTTGTTCAATTCTCGTGAAC
CACTCTATCGAAAAACAGAGGCCACTTTCGAATGCCGCGAAAGAGGCACA
GACGATATTCGACATCGAGAAATACAATCCAGGGCCCATGCGACATATTG
GGAGTCACTTCAAATCACCGGTTTCTTTCTCGAAATATGTGGAGCGCGTA
CGAAAACATAAAGTTCGTCAAGATGGATGGAGGAAAGAATTGATTGGTGC
GGCATATGGCAACCACGAAACAGGAGTATTCCGCTCTTCCCTGAACTTAT
TGATCACAGAACTAAAAATGGTAGGCGGTTCATCTGGAGTAGAAGCGTTT
TCTGTGCGAAACAATGGCGCAGATAGGTTGTATTCATCCCCGTGGGACTC
ATATGTTATGCGCAGGTATCACGAAGAAGTACCAGGACACATGAAAATTG
TAACTGTTGATGTGTACTGCGATGGAACGATACTGGCCCACTCCGGCTCG
CAGAGCGCGAGAACACTCCGCATCCGCTTCAATAACTTGAAAGGCAGGTC
ACGTCTGTTGCATGAAGTAGGAATTGCCCCACGTATAGATTCCGATGGTT
AA

protein sequence of Ggra2068.t1

>Ggra2068.t1 ID=Ggra2068.t1|Name=Ggra2068.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=284bp
MASVQRPCDSETTPSAAPVLSENKDHNINSFEVGECYQSVFEGTCHDQTE
SHFHRPVTQAPVSKEVYSFFDNFNDSSVSLYTEVEEPEMEIHPACSILVN
HSIEKQRPLSNAAKEAQTIFDIEKYNPGPMRHIGSHFKSPVSFSKYVERV
RKHKVRQDGWRKELIGAAYGNHETGVFRSSLNLLITELKMVGGSSGVEAF
SVRNNGADRLYSSPWDSYVMRRYHEEVPGHMKIVTVDVYCDGTILAHSGS
QSARTLRIRFNNLKGRSRLLHEVGIAPRIDSDG*

mRNA from alignment at tig00000900_pilon:54562..55413+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2068.t1 ID=Ggra2068.t1|Name=Ggra2068.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00000900_pilon:54562..55413+ (Gracilaria gracilis GNS1m male)
ATGGCTTCCGTTCAACGTCCATGCGACTCCGAAACAACTCCATCCGCAGC
ACCTGTATTGTCGGAAAATAAGGACCATAACATAAACTCATTCGAAGTGG
GCGAATGCTACCAGTCCGTTTTTGAAGGGACATGTCACGACCAAACCGAA
AGTCATTTCCATCGCCCTGTGACTCAAGCTCCCGTGTCGAAGGAGGTGTA
TTCGTTCTTTGACAACTTTAATGACTCGTCAGTCTCTCTTTACACGGAGG
TTGAAGAGCCAGAAATGGAGATCCATCCGGCTTGTTCAATTCTCGTGAAC
CACTCTATCGAAAAACAGAGGCCACTTTCGAATGCCGCGAAAGAGGCACA
GACGATATTCGACATCGAGAAATACAATCCAGGGCCCATGCGACATATTG
GGAGTCACTTCAAATCACCGGTTTCTTTCTCGAAATATGTGGAGCGCGTA
CGAAAACATAAAGTTCGTCAAGATGGATGGAGGAAAGAATTGATTGGTGC
GGCATATGGCAACCACGAAACAGGAGTATTCCGCTCTTCCCTGAACTTAT
TGATCACAGAACTAAAAATGGTAGGCGGTTCATCTGGAGTAGAAGCGTTT
TCTGTGCGAAACAATGGCGCAGATAGGTTGTATTCATCCCCGTGGGACTC
ATATGTTATGCGCAGGTATCACGAAGAAGTACCAGGACACATGAAAATTG
TAACTGTTGATGTGTACTGCGATGGAACGATACTGGCCCACTCCGGCTCG
CAGAGCGCGAGAACACTCCGCATCCGCTTCAATAACTTGAAAGGCAGGTC
ACGTCTGTTGCATGAAGTAGGAATTGCCCCACGTATAGATTCCGATGGTT
AA

Coding sequence (CDS) from alignment at tig00000900_pilon:54562..55413+

>Ggra2068.t1 ID=Ggra2068.t1|Name=Ggra2068.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=852bp|location=Sequence derived from alignment at tig00000900_pilon:54562..55413+ (Gracilaria gracilis GNS1m male)
ATGGCTTCCGTTCAACGTCCATGCGACTCCGAAACAACTCCATCCGCAGC
ACCTGTATTGTCGGAAAATAAGGACCATAACATAAACTCATTCGAAGTGG
GCGAATGCTACCAGTCCGTTTTTGAAGGGACATGTCACGACCAAACCGAA
AGTCATTTCCATCGCCCTGTGACTCAAGCTCCCGTGTCGAAGGAGGTGTA
TTCGTTCTTTGACAACTTTAATGACTCGTCAGTCTCTCTTTACACGGAGG
TTGAAGAGCCAGAAATGGAGATCCATCCGGCTTGTTCAATTCTCGTGAAC
CACTCTATCGAAAAACAGAGGCCACTTTCGAATGCCGCGAAAGAGGCACA
GACGATATTCGACATCGAGAAATACAATCCAGGGCCCATGCGACATATTG
GGAGTCACTTCAAATCACCGGTTTCTTTCTCGAAATATGTGGAGCGCGTA
CGAAAACATAAAGTTCGTCAAGATGGATGGAGGAAAGAATTGATTGGTGC
GGCATATGGCAACCACGAAACAGGAGTATTCCGCTCTTCCCTGAACTTAT
TGATCACAGAACTAAAAATGGTAGGCGGTTCATCTGGAGTAGAAGCGTTT
TCTGTGCGAAACAATGGCGCAGATAGGTTGTATTCATCCCCGTGGGACTC
ATATGTTATGCGCAGGTATCACGAAGAAGTACCAGGACACATGAAAATTG
TAACTGTTGATGTGTACTGCGATGGAACGATACTGGCCCACTCCGGCTCG
CAGAGCGCGAGAACACTCCGCATCCGCTTCAATAACTTGAAAGGCAGGTC
ACGTCTGTTGCATGAAGTAGGAATTGCCCCACGTATAGATTCCGATGGTT
AA