Ggra2066.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2066.t1
Unique NameGgra2066.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length135
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:25187..25591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2066Ggra2066Gracilaria gracilis GNS1m malegenetig00000900_pilon 25187..25591 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2066.t1.stop1Ggra2066.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 25187..25189 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2066.t1.CDS1Ggra2066.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 25187..25591 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2066.t1.exon1Ggra2066.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 25187..25591 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2066.t1.start1Ggra2066.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 25589..25591 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2066.t1Ggra2066.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 25187..25591 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2066.t1 ID=Ggra2066.t1|Name=Ggra2066.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=135bp
MFSKIRSCFREDEWVMLDDPESMNPETYIERDVYGRSAPLEGIIVLPPLD
EAEEVDESGPMQLRQEKPRQEEPIPMARCEPDPAAVDRRRKRKQCIRLCG
AIVTEPFKRAGRSIVEGISNAYGGCKRLYRTRKE*
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spliced messenger RNA

>Ggra2066.t1 ID=Ggra2066.t1|Name=Ggra2066.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=405bp|location=Sequence derived from alignment at tig00000900_pilon:25187..25591- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCAGCAAAATCCGTTCGTGTTTTCGTGAAGATGAGTGGGTGATGCT
CGACGATCCGGAGTCGATGAACCCGGAAACGTATATTGAACGAGATGTGT
ATGGGCGGAGCGCCCCACTGGAGGGCATAATTGTTTTGCCTCCTTTGGAT
GAGGCAGAAGAAGTGGACGAAAGCGGACCAATGCAGCTCAGGCAAGAAAA
GCCCAGGCAAGAAGAGCCCATCCCTATGGCTCGATGCGAGCCCGACCCGG
CCGCTGTGGATAGAAGACGAAAACGAAAACAGTGCATAAGGCTCTGTGGT
GCCATCGTCACTGAGCCGTTCAAGAGGGCGGGGCGTTCCATCGTAGAAGG
TATTTCAAATGCTTACGGTGGTTGTAAACGTTTGTACAGGACCAGAAAGG
AGTGA
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protein sequence of Ggra2066.t1

>Ggra2066.t1 ID=Ggra2066.t1|Name=Ggra2066.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=135bp
MFSKIRSCFREDEWVMLDDPESMNPETYIERDVYGRSAPLEGIIVLPPLD
EAEEVDESGPMQLRQEKPRQEEPIPMARCEPDPAAVDRRRKRKQCIRLCG
AIVTEPFKRAGRSIVEGISNAYGGCKRLYRTRKE*
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mRNA from alignment at tig00000900_pilon:25187..25591-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2066.t1 ID=Ggra2066.t1|Name=Ggra2066.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=405bp|location=Sequence derived from alignment at tig00000900_pilon:25187..25591- (Gracilaria gracilis GNS1m male)
ATGTTCAGCAAAATCCGTTCGTGTTTTCGTGAAGATGAGTGGGTGATGCT
CGACGATCCGGAGTCGATGAACCCGGAAACGTATATTGAACGAGATGTGT
ATGGGCGGAGCGCCCCACTGGAGGGCATAATTGTTTTGCCTCCTTTGGAT
GAGGCAGAAGAAGTGGACGAAAGCGGACCAATGCAGCTCAGGCAAGAAAA
GCCCAGGCAAGAAGAGCCCATCCCTATGGCTCGATGCGAGCCCGACCCGG
CCGCTGTGGATAGAAGACGAAAACGAAAACAGTGCATAAGGCTCTGTGGT
GCCATCGTCACTGAGCCGTTCAAGAGGGCGGGGCGTTCCATCGTAGAAGG
TATTTCAAATGCTTACGGTGGTTGTAAACGTTTGTACAGGACCAGAAAGG
AGTGA
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Coding sequence (CDS) from alignment at tig00000900_pilon:25187..25591-

>Ggra2066.t1 ID=Ggra2066.t1|Name=Ggra2066.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=405bp|location=Sequence derived from alignment at tig00000900_pilon:25187..25591- (Gracilaria gracilis GNS1m male)
ATGTTCAGCAAAATCCGTTCGTGTTTTCGTGAAGATGAGTGGGTGATGCT
CGACGATCCGGAGTCGATGAACCCGGAAACGTATATTGAACGAGATGTGT
ATGGGCGGAGCGCCCCACTGGAGGGCATAATTGTTTTGCCTCCTTTGGAT
GAGGCAGAAGAAGTGGACGAAAGCGGACCAATGCAGCTCAGGCAAGAAAA
GCCCAGGCAAGAAGAGCCCATCCCTATGGCTCGATGCGAGCCCGACCCGG
CCGCTGTGGATAGAAGACGAAAACGAAAACAGTGCATAAGGCTCTGTGGT
GCCATCGTCACTGAGCCGTTCAAGAGGGCGGGGCGTTCCATCGTAGAAGG
TATTTCAAATGCTTACGGTGGTTGTAAACGTTTGTACAGGACCAGAAAGG
AGTGA
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