Ggra2063.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2063.t1
Unique NameGgra2063.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length326
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:18610..19587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2063Ggra2063Gracilaria gracilis GNS1m malegenetig00000900_pilon 18610..19587 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2063.t1.stop1Ggra2063.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 18610..18612 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2063.t1.CDS1Ggra2063.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 18610..19587 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2063.t1.exon1Ggra2063.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 18610..19587 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2063.t1.start1Ggra2063.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 19585..19587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2063.t1Ggra2063.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 18610..19587 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2063.t1 ID=Ggra2063.t1|Name=Ggra2063.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=326bp
MEPVHGDAAKASLGKQLVLKAADDGCARALVFLAHRYEYPQLDRSVSFAA
DVPKERHARERFIVSLYKKAAAADDPDALNDLGTSYAQQYGGLHADFDSV
VHYYLRAIHAGSLHAFDNLGTHYETGMGMRFPQRVDYDKALFYYRQGARK
GCPKCAYNLGAAYEEGMSDTLPKDLLKAEKYYKIALKLGNDCSDLQTVAR
TLKDLCALYITKMKLGAADDEHTARCDAQLRSILPNELLHDVLFKVNSAV
AHIIRSRSTSRLVKLLGEENARLVSKRVRSVWKNSDKLAHEQQQLLLEHL
TGGESVKEVMNARKRRAIAKRRSKN*
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spliced messenger RNA

>Ggra2063.t1 ID=Ggra2063.t1|Name=Ggra2063.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00000900_pilon:18610..19587- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCCCGTGCACGGCGATGCGGCCAAGGCGTCGCTGGGCAAGCAGCT
GGTGCTCAAGGCCGCTGACGACGGCTGTGCGCGCGCGCTCGTCTTTCTGG
CGCACCGCTACGAGTACCCGCAGCTGGATCGCAGCGTCAGCTTTGCGGCC
GACGTGCCCAAAGAGCGCCACGCGCGCGAGCGCTTCATCGTGTCGCTGTA
CAAGAAGGCCGCCGCCGCCGACGACCCGGATGCGCTCAACGACCTGGGCA
CGTCGTACGCGCAGCAGTACGGCGGCCTGCACGCCGACTTTGACTCGGTG
GTGCACTACTACTTGCGCGCCATCCACGCAGGCTCGCTGCACGCGTTTGA
CAACCTGGGCACGCACTACGAGACCGGCATGGGCATGCGCTTTCCGCAGC
GCGTGGACTATGACAAGGCGTTGTTCTACTATCGGCAGGGCGCGAGAAAG
GGCTGCCCAAAGTGCGCATACAACCTGGGCGCCGCGTACGAGGAAGGCAT
GAGCGATACGTTGCCAAAGGACCTGCTCAAGGCCGAAAAGTACTACAAGA
TTGCGCTCAAGCTGGGCAACGATTGCAGCGATCTGCAGACGGTGGCGCGC
ACGCTCAAGGACCTGTGCGCGCTGTACATCACCAAGATGAAGCTGGGCGC
GGCGGATGATGAGCACACTGCGCGCTGTGACGCGCAGCTTCGCAGCATAT
TGCCCAATGAGTTGCTGCACGACGTACTGTTCAAGGTGAACAGCGCGGTG
GCGCACATCATTCGCAGCCGCTCTACGTCCAGGCTGGTCAAGCTGTTGGG
CGAGGAGAATGCGCGGCTGGTGAGCAAGAGGGTGAGATCAGTGTGGAAGA
ATAGTGACAAGTTGGCGCATGAGCAGCAACAGCTGTTGCTGGAGCACTTG
ACGGGTGGCGAAAGCGTGAAGGAGGTGATGAACGCGCGCAAGAGGCGCGC
TATTGCGAAGCGACGATCAAAGAATTGA
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protein sequence of Ggra2063.t1

>Ggra2063.t1 ID=Ggra2063.t1|Name=Ggra2063.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=326bp
MEPVHGDAAKASLGKQLVLKAADDGCARALVFLAHRYEYPQLDRSVSFAA
DVPKERHARERFIVSLYKKAAAADDPDALNDLGTSYAQQYGGLHADFDSV
VHYYLRAIHAGSLHAFDNLGTHYETGMGMRFPQRVDYDKALFYYRQGARK
GCPKCAYNLGAAYEEGMSDTLPKDLLKAEKYYKIALKLGNDCSDLQTVAR
TLKDLCALYITKMKLGAADDEHTARCDAQLRSILPNELLHDVLFKVNSAV
AHIIRSRSTSRLVKLLGEENARLVSKRVRSVWKNSDKLAHEQQQLLLEHL
TGGESVKEVMNARKRRAIAKRRSKN*
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mRNA from alignment at tig00000900_pilon:18610..19587-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2063.t1 ID=Ggra2063.t1|Name=Ggra2063.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00000900_pilon:18610..19587- (Gracilaria gracilis GNS1m male)
ATGGAGCCCGTGCACGGCGATGCGGCCAAGGCGTCGCTGGGCAAGCAGCT
GGTGCTCAAGGCCGCTGACGACGGCTGTGCGCGCGCGCTCGTCTTTCTGG
CGCACCGCTACGAGTACCCGCAGCTGGATCGCAGCGTCAGCTTTGCGGCC
GACGTGCCCAAAGAGCGCCACGCGCGCGAGCGCTTCATCGTGTCGCTGTA
CAAGAAGGCCGCCGCCGCCGACGACCCGGATGCGCTCAACGACCTGGGCA
CGTCGTACGCGCAGCAGTACGGCGGCCTGCACGCCGACTTTGACTCGGTG
GTGCACTACTACTTGCGCGCCATCCACGCAGGCTCGCTGCACGCGTTTGA
CAACCTGGGCACGCACTACGAGACCGGCATGGGCATGCGCTTTCCGCAGC
GCGTGGACTATGACAAGGCGTTGTTCTACTATCGGCAGGGCGCGAGAAAG
GGCTGCCCAAAGTGCGCATACAACCTGGGCGCCGCGTACGAGGAAGGCAT
GAGCGATACGTTGCCAAAGGACCTGCTCAAGGCCGAAAAGTACTACAAGA
TTGCGCTCAAGCTGGGCAACGATTGCAGCGATCTGCAGACGGTGGCGCGC
ACGCTCAAGGACCTGTGCGCGCTGTACATCACCAAGATGAAGCTGGGCGC
GGCGGATGATGAGCACACTGCGCGCTGTGACGCGCAGCTTCGCAGCATAT
TGCCCAATGAGTTGCTGCACGACGTACTGTTCAAGGTGAACAGCGCGGTG
GCGCACATCATTCGCAGCCGCTCTACGTCCAGGCTGGTCAAGCTGTTGGG
CGAGGAGAATGCGCGGCTGGTGAGCAAGAGGGTGAGATCAGTGTGGAAGA
ATAGTGACAAGTTGGCGCATGAGCAGCAACAGCTGTTGCTGGAGCACTTG
ACGGGTGGCGAAAGCGTGAAGGAGGTGATGAACGCGCGCAAGAGGCGCGC
TATTGCGAAGCGACGATCAAAGAATTGA
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Coding sequence (CDS) from alignment at tig00000900_pilon:18610..19587-

>Ggra2063.t1 ID=Ggra2063.t1|Name=Ggra2063.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=978bp|location=Sequence derived from alignment at tig00000900_pilon:18610..19587- (Gracilaria gracilis GNS1m male)
ATGGAGCCCGTGCACGGCGATGCGGCCAAGGCGTCGCTGGGCAAGCAGCT
GGTGCTCAAGGCCGCTGACGACGGCTGTGCGCGCGCGCTCGTCTTTCTGG
CGCACCGCTACGAGTACCCGCAGCTGGATCGCAGCGTCAGCTTTGCGGCC
GACGTGCCCAAAGAGCGCCACGCGCGCGAGCGCTTCATCGTGTCGCTGTA
CAAGAAGGCCGCCGCCGCCGACGACCCGGATGCGCTCAACGACCTGGGCA
CGTCGTACGCGCAGCAGTACGGCGGCCTGCACGCCGACTTTGACTCGGTG
GTGCACTACTACTTGCGCGCCATCCACGCAGGCTCGCTGCACGCGTTTGA
CAACCTGGGCACGCACTACGAGACCGGCATGGGCATGCGCTTTCCGCAGC
GCGTGGACTATGACAAGGCGTTGTTCTACTATCGGCAGGGCGCGAGAAAG
GGCTGCCCAAAGTGCGCATACAACCTGGGCGCCGCGTACGAGGAAGGCAT
GAGCGATACGTTGCCAAAGGACCTGCTCAAGGCCGAAAAGTACTACAAGA
TTGCGCTCAAGCTGGGCAACGATTGCAGCGATCTGCAGACGGTGGCGCGC
ACGCTCAAGGACCTGTGCGCGCTGTACATCACCAAGATGAAGCTGGGCGC
GGCGGATGATGAGCACACTGCGCGCTGTGACGCGCAGCTTCGCAGCATAT
TGCCCAATGAGTTGCTGCACGACGTACTGTTCAAGGTGAACAGCGCGGTG
GCGCACATCATTCGCAGCCGCTCTACGTCCAGGCTGGTCAAGCTGTTGGG
CGAGGAGAATGCGCGGCTGGTGAGCAAGAGGGTGAGATCAGTGTGGAAGA
ATAGTGACAAGTTGGCGCATGAGCAGCAACAGCTGTTGCTGGAGCACTTG
ACGGGTGGCGAAAGCGTGAAGGAGGTGATGAACGCGCGCAAGAGGCGCGC
TATTGCGAAGCGACGATCAAAGAATTGA
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