Ggra2035.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2035.t1
Unique NameGgra2035.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length115
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000030_piloncontigtig00000030_pilon:113956..114406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0185187
PFAMsGATA
Max annot lvl554915|Amoebozoa
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045595,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2001141
Evalue1.23e-06
EggNOG OGs29JJI@1|root,2RSU0@2759|Eukaryota,3XAB4@554915|Amoebozoa
Descriptionzinc finger binding to DNA consensus sequence [AT]GATA[AG]
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2035Ggra2035Gracilaria gracilis GNS1m malegenetig00000030_pilon 113956..114406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2035.t1Ggra2035.t1Gracilaria gracilis GNS1m malepolypeptidetig00000030_pilon 113956..114406 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2035.t1.stop1Ggra2035.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000030_pilon 113956..113958 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2035.t1.CDS1Ggra2035.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000030_pilon 113956..114212 -
Ggra2035.t1.CDS2Ggra2035.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000030_pilon 114319..114406 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2035.t1.exon1Ggra2035.t1.exon1Gracilaria gracilis GNS1m maleexontig00000030_pilon 113956..114212 -
Ggra2035.t1.exon2Ggra2035.t1.exon2Gracilaria gracilis GNS1m maleexontig00000030_pilon 114319..114406 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2035.t1.intron1Ggra2035.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000030_pilon 114213..114318 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2035.t1.start1Ggra2035.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000030_pilon 114404..114406 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2035.t1 ID=Ggra2035.t1|Name=Ggra2035.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=115bp
MTGSSTSSAPRMCQDCGRTQTSQWRYGRNDKMLLCNACGIKWKRKNPRPD
SERMKPGPKRPINAHGSGSMELSSLLAPDGPSRRGIAIPELLNDDGSSKS
TSKSTSKSTSRPPK*
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spliced messenger RNA

>Ggra2035.t1 ID=Ggra2035.t1|Name=Ggra2035.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=345bp|location=Sequence derived from alignment at tig00000030_pilon:113956..114406- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGGCTCTTCTACTAGTTCGGCGCCCAGGATGTGCCAGGATTGTGG
CCGCACACAAACGTCGCAATGGAGATACGGCCGAAATGATAAGATGTTGC
TGTGCAATGCGTGTGGAATCAAGTGGAAGCGCAAGAATCCTCGCCCCGAT
AGTGAGAGAATGAAGCCTGGGCCAAAGCGTCCGATCAATGCACATGGCTC
GGGCTCGATGGAGCTGAGCTCGTTGTTAGCGCCGGATGGGCCCTCCCGAC
GTGGCATCGCTATTCCTGAATTGCTCAACGATGACGGCAGTTCCAAGAGC
ACTTCCAAGAGCACTTCCAAGAGCACTTCACGACCTCCAAAGTAA
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protein sequence of Ggra2035.t1

>Ggra2035.t1 ID=Ggra2035.t1|Name=Ggra2035.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=115bp
MTGSSTSSAPRMCQDCGRTQTSQWRYGRNDKMLLCNACGIKWKRKNPRPD
SERMKPGPKRPINAHGSGSMELSSLLAPDGPSRRGIAIPELLNDDGSSKS
TSKSTSKSTSRPPK*
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mRNA from alignment at tig00000030_pilon:113956..114406-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2035.t1 ID=Ggra2035.t1|Name=Ggra2035.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=451bp|location=Sequence derived from alignment at tig00000030_pilon:113956..114406- (Gracilaria gracilis GNS1m male)
ATGACTGGCTCTTCTACTAGTTCGGCGCCCAGGATGTGCCAGGATTGTGG
CCGCACACAAACGTCGCAATGGAGATACGGCCGAAATGGTAAGCGTTGTA
CATCCATCTATCTATCTATCTGCTGCTGCGTTTGTGTTGCGCATGTGACT
GACCTGTGATGTGCTTTGTTTTTAACGCGTGGACAACGGTGTAGATAAGA
TGTTGCTGTGCAATGCGTGTGGAATCAAGTGGAAGCGCAAGAATCCTCGC
CCCGATAGTGAGAGAATGAAGCCTGGGCCAAAGCGTCCGATCAATGCACA
TGGCTCGGGCTCGATGGAGCTGAGCTCGTTGTTAGCGCCGGATGGGCCCT
CCCGACGTGGCATCGCTATTCCTGAATTGCTCAACGATGACGGCAGTTCC
AAGAGCACTTCCAAGAGCACTTCCAAGAGCACTTCACGACCTCCAAAGTA
A
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Coding sequence (CDS) from alignment at tig00000030_pilon:113956..114406-

>Ggra2035.t1 ID=Ggra2035.t1|Name=Ggra2035.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=345bp|location=Sequence derived from alignment at tig00000030_pilon:113956..114406- (Gracilaria gracilis GNS1m male)
ATGACTGGCTCTTCTACTAGTTCGGCGCCCAGGATGTGCCAGGATTGTGG
CCGCACACAAACGTCGCAATGGAGATACGGCCGAAATGATAAGATGTTGC
TGTGCAATGCGTGTGGAATCAAGTGGAAGCGCAAGAATCCTCGCCCCGAT
AGTGAGAGAATGAAGCCTGGGCCAAAGCGTCCGATCAATGCACATGGCTC
GGGCTCGATGGAGCTGAGCTCGTTGTTAGCGCCGGATGGGCCCTCCCGAC
GTGGCATCGCTATTCCTGAATTGCTCAACGATGACGGCAGTTCCAAGAGC
ACTTCCAAGAGCACTTCCAAGAGCACTTCACGACCTCCAAAGTAA
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