Ggra2033.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2033.t1
Unique Name	Ggra2033.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	409

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000030_pilon	contig	tig00000030_pilon:34227..35453 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	65093.PCC7418_3695
Preferred name	sigA
PFAMs	Sigma70_r1_2,Sigma70_r2,Sigma70_r3,Sigma70_r4
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K03086
Evalue	4.63e-121
EggNOG OGs	COG0568@1\|root,COG0568@2\|Bacteria,1G0DU@1117\|Cyanobacteria
Description	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
COG category	K
BRITE	ko00000,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2033	Ggra2033	Gracilaria gracilis GNS1m male	gene	tig00000030_pilon 34227..35453 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2033.t1.start1	Ggra2033.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000030_pilon 34227..34229 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2033.t1.CDS1	Ggra2033.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000030_pilon 34227..35453 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2033.t1.exon1	Ggra2033.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000030_pilon 34227..35453 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2033.t1.stop1	Ggra2033.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000030_pilon 35451..35453 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2033.t1	Ggra2033.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000030_pilon 34227..35453 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000030_pilon:34227..35453+
coding sequence from alignment at tig00000030_pilon:34227..35453+

mRNA sequence

>Ggra2033.t1 ID=Ggra2033.t1|Name=Ggra2033.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=409bp
MLSPAFLPPAAPRVLAPPRAPLRAPPRAPPRTARAPPVMIAAPKRRGRPR
TRRARAPTADVTLSPPSTAAKSSRSASSSSPPPPSPPTLSLSDNTVRWYL
QLIGSDRLLTPDEEVKFGRLVALLMRWQRSRVQLADTIGRQPSDDEWADF
VDEDRCSFRTRLVDARKAKDRMIVCNLRLVVSIAKRYLNRGMPLSDLIQE
GTLGLIRACEKFDADKGFKFSTYATWWVRQAVTRAIADQSRTVRLPVHLY
DTITAIRRATKYLTNELGRPPLENEVAEYCNITVEKLRTTRVNMQNAMPL
DCPLTTSDDALTLSDVIESNAESPEDRVESSLLRDDLEHVVNSLTPRERD
VVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVL
KAYTPPGP*

spliced messenger RNA

>Ggra2033.t1 ID=Ggra2033.t1|Name=Ggra2033.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1227bp|location=Sequence derived from alignment at tig00000030_pilon:34227..35453+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTCGCCCGCCTTCCTGCCGCCCGCCGCGCCGCGCGTGCTGGCGCC
GCCGCGTGCGCCGCTGCGTGCGCCGCCGCGTGCGCCGCCGCGTACGGCGC
GCGCGCCGCCCGTCATGATTGCGGCGCCCAAGCGTCGCGGCCGTCCGCGT
ACGCGCCGCGCGCGCGCGCCCACGGCCGATGTTACGCTATCGCCGCCTTC
CACCGCCGCCAAGTCGTCTCGGTCCGCGTCGTCGTCGTCGCCGCCGCCGC
CGTCGCCGCCCACGCTCAGCCTGTCGGATAATACCGTGCGCTGGTACCTG
CAGCTCATCGGCTCGGACCGCCTGCTCACCCCCGACGAGGAGGTCAAGTT
TGGCCGCCTGGTTGCGCTGCTTATGCGCTGGCAGCGCAGTCGCGTGCAGC
TGGCCGACACCATTGGCAGGCAGCCTTCGGATGACGAGTGGGCTGATTTT
GTCGATGAGGACCGTTGCTCCTTTCGAACGCGCCTGGTTGACGCGCGCAA
GGCCAAGGACAGGATGATTGTGTGCAACTTGAGGTTGGTCGTGTCCATTG
CAAAGCGTTATCTCAATCGTGGCATGCCGCTGTCCGACCTCATTCAGGAG
GGCACGCTGGGGCTCATTCGCGCCTGTGAGAAGTTTGATGCCGACAAGGG
ATTCAAGTTTTCGACCTATGCTACGTGGTGGGTCAGACAGGCCGTCACCC
GTGCCATTGCTGACCAGAGTCGTACCGTTCGTCTGCCGGTGCATTTGTAT
GATACCATCACCGCCATTCGTAGGGCCACCAAGTATCTCACCAATGAGCT
GGGTCGCCCGCCGCTGGAGAACGAGGTTGCCGAGTATTGTAACATCACCG
TGGAGAAGCTTCGCACTACTCGCGTCAACATGCAGAACGCCATGCCGTTG
GATTGTCCGCTCACCACTTCCGATGATGCGCTTACTCTCAGCGATGTCAT
CGAGAGCAATGCTGAGAGCCCGGAGGATAGGGTGGAGAGCTCGCTGTTGC
GCGATGACTTGGAGCATGTGGTCAACAGCCTCACTCCACGTGAGCGCGAT
GTTGTTCGTATGCGTTATGGACTGGATGATGGCAGGGCCAAGACTCTGGA
AGAGATTGGACGCGTTTTCGATGTCACCAAGGAACGCGTCAGACAGATTG
AATCCAAAGCACTGCGAAAACTGAGACATCCTTTCCGTTCTGCCGTTCTC
AAGGCGTACACACCCCCGGGTCCATAG

protein sequence of Ggra2033.t1

>Ggra2033.t1 ID=Ggra2033.t1|Name=Ggra2033.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=409bp
MLSPAFLPPAAPRVLAPPRAPLRAPPRAPPRTARAPPVMIAAPKRRGRPR
TRRARAPTADVTLSPPSTAAKSSRSASSSSPPPPSPPTLSLSDNTVRWYL
QLIGSDRLLTPDEEVKFGRLVALLMRWQRSRVQLADTIGRQPSDDEWADF
VDEDRCSFRTRLVDARKAKDRMIVCNLRLVVSIAKRYLNRGMPLSDLIQE
GTLGLIRACEKFDADKGFKFSTYATWWVRQAVTRAIADQSRTVRLPVHLY
DTITAIRRATKYLTNELGRPPLENEVAEYCNITVEKLRTTRVNMQNAMPL
DCPLTTSDDALTLSDVIESNAESPEDRVESSLLRDDLEHVVNSLTPRERD
VVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVL
KAYTPPGP*

mRNA from alignment at tig00000030_pilon:34227..35453+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2033.t1 ID=Ggra2033.t1|Name=Ggra2033.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1227bp|location=Sequence derived from alignment at tig00000030_pilon:34227..35453+ (Gracilaria gracilis GNS1m male)
ATGTTGTCGCCCGCCTTCCTGCCGCCCGCCGCGCCGCGCGTGCTGGCGCC
GCCGCGTGCGCCGCTGCGTGCGCCGCCGCGTGCGCCGCCGCGTACGGCGC
GCGCGCCGCCCGTCATGATTGCGGCGCCCAAGCGTCGCGGCCGTCCGCGT
ACGCGCCGCGCGCGCGCGCCCACGGCCGATGTTACGCTATCGCCGCCTTC
CACCGCCGCCAAGTCGTCTCGGTCCGCGTCGTCGTCGTCGCCGCCGCCGC
CGTCGCCGCCCACGCTCAGCCTGTCGGATAATACCGTGCGCTGGTACCTG
CAGCTCATCGGCTCGGACCGCCTGCTCACCCCCGACGAGGAGGTCAAGTT
TGGCCGCCTGGTTGCGCTGCTTATGCGCTGGCAGCGCAGTCGCGTGCAGC
TGGCCGACACCATTGGCAGGCAGCCTTCGGATGACGAGTGGGCTGATTTT
GTCGATGAGGACCGTTGCTCCTTTCGAACGCGCCTGGTTGACGCGCGCAA
GGCCAAGGACAGGATGATTGTGTGCAACTTGAGGTTGGTCGTGTCCATTG
CAAAGCGTTATCTCAATCGTGGCATGCCGCTGTCCGACCTCATTCAGGAG
GGCACGCTGGGGCTCATTCGCGCCTGTGAGAAGTTTGATGCCGACAAGGG
ATTCAAGTTTTCGACCTATGCTACGTGGTGGGTCAGACAGGCCGTCACCC
GTGCCATTGCTGACCAGAGTCGTACCGTTCGTCTGCCGGTGCATTTGTAT
GATACCATCACCGCCATTCGTAGGGCCACCAAGTATCTCACCAATGAGCT
GGGTCGCCCGCCGCTGGAGAACGAGGTTGCCGAGTATTGTAACATCACCG
TGGAGAAGCTTCGCACTACTCGCGTCAACATGCAGAACGCCATGCCGTTG
GATTGTCCGCTCACCACTTCCGATGATGCGCTTACTCTCAGCGATGTCAT
CGAGAGCAATGCTGAGAGCCCGGAGGATAGGGTGGAGAGCTCGCTGTTGC
GCGATGACTTGGAGCATGTGGTCAACAGCCTCACTCCACGTGAGCGCGAT
GTTGTTCGTATGCGTTATGGACTGGATGATGGCAGGGCCAAGACTCTGGA
AGAGATTGGACGCGTTTTCGATGTCACCAAGGAACGCGTCAGACAGATTG
AATCCAAAGCACTGCGAAAACTGAGACATCCTTTCCGTTCTGCCGTTCTC
AAGGCGTACACACCCCCGGGTCCATAG

Coding sequence (CDS) from alignment at tig00000030_pilon:34227..35453+

>Ggra2033.t1 ID=Ggra2033.t1|Name=Ggra2033.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1227bp|location=Sequence derived from alignment at tig00000030_pilon:34227..35453+ (Gracilaria gracilis GNS1m male)
ATGTTGTCGCCCGCCTTCCTGCCGCCCGCCGCGCCGCGCGTGCTGGCGCC
GCCGCGTGCGCCGCTGCGTGCGCCGCCGCGTGCGCCGCCGCGTACGGCGC
GCGCGCCGCCCGTCATGATTGCGGCGCCCAAGCGTCGCGGCCGTCCGCGT
ACGCGCCGCGCGCGCGCGCCCACGGCCGATGTTACGCTATCGCCGCCTTC
CACCGCCGCCAAGTCGTCTCGGTCCGCGTCGTCGTCGTCGCCGCCGCCGC
CGTCGCCGCCCACGCTCAGCCTGTCGGATAATACCGTGCGCTGGTACCTG
CAGCTCATCGGCTCGGACCGCCTGCTCACCCCCGACGAGGAGGTCAAGTT
TGGCCGCCTGGTTGCGCTGCTTATGCGCTGGCAGCGCAGTCGCGTGCAGC
TGGCCGACACCATTGGCAGGCAGCCTTCGGATGACGAGTGGGCTGATTTT
GTCGATGAGGACCGTTGCTCCTTTCGAACGCGCCTGGTTGACGCGCGCAA
GGCCAAGGACAGGATGATTGTGTGCAACTTGAGGTTGGTCGTGTCCATTG
CAAAGCGTTATCTCAATCGTGGCATGCCGCTGTCCGACCTCATTCAGGAG
GGCACGCTGGGGCTCATTCGCGCCTGTGAGAAGTTTGATGCCGACAAGGG
ATTCAAGTTTTCGACCTATGCTACGTGGTGGGTCAGACAGGCCGTCACCC
GTGCCATTGCTGACCAGAGTCGTACCGTTCGTCTGCCGGTGCATTTGTAT
GATACCATCACCGCCATTCGTAGGGCCACCAAGTATCTCACCAATGAGCT
GGGTCGCCCGCCGCTGGAGAACGAGGTTGCCGAGTATTGTAACATCACCG
TGGAGAAGCTTCGCACTACTCGCGTCAACATGCAGAACGCCATGCCGTTG
GATTGTCCGCTCACCACTTCCGATGATGCGCTTACTCTCAGCGATGTCAT
CGAGAGCAATGCTGAGAGCCCGGAGGATAGGGTGGAGAGCTCGCTGTTGC
GCGATGACTTGGAGCATGTGGTCAACAGCCTCACTCCACGTGAGCGCGAT
GTTGTTCGTATGCGTTATGGACTGGATGATGGCAGGGCCAAGACTCTGGA
AGAGATTGGACGCGTTTTCGATGTCACCAAGGAACGCGTCAGACAGATTG
AATCCAAAGCACTGCGAAAACTGAGACATCCTTTCCGTTCTGCCGTTCTC
AAGGCGTACACACCCCCGGGTCCATAG