Ggra203.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra203.t1
Unique NameGgra203.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length368
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000960_piloncontigtig00000960_pilon:177935..179178 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra203Ggra203Gracilaria gracilis GNS1m malegenetig00000960_pilon 177935..179178 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra203.t1Ggra203.t1Gracilaria gracilis GNS1m malepolypeptidetig00000960_pilon 177935..179178 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra203.t1.stop1Ggra203.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000960_pilon 177935..177937 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra203.t1.CDS1Ggra203.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000960_pilon 177935..177944 -
Ggra203.t1.CDS2Ggra203.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000960_pilon 178085..179178 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra203.t1.exon1Ggra203.t1.exon1Gracilaria gracilis GNS1m maleexontig00000960_pilon 177935..177944 -
Ggra203.t1.exon2Ggra203.t1.exon2Gracilaria gracilis GNS1m maleexontig00000960_pilon 178085..179178 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra203.t1.intron1Ggra203.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000960_pilon 177945..178084 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra203.t1.start1Ggra203.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000960_pilon 179176..179178 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra203.t1 ID=Ggra203.t1|Name=Ggra203.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=368bp
MKPGQEEKERRRRHKLAPIATGPHEVVKFNDETVVIRRGDEVERVSRNRV
VGAPRSEAEAQRVETKRVNTNEHVTQPPMAPELSDLPPRGRLISPKLPLG
RIGMERRRDEFGSGLKPSGTAVSDIIHSSCPVTARSAGHTVDTPHVRGSS
AEVTTLTKVTFEISRGEPDTAIVGDPDKRTASRERQSEEGEYAAVGPSTP
STEPGGTPRHETIAAEKQQQDKVVKEMERPQRKVVPADPTAEGAVQQGEI
PIERAVTRLKKEAPPRVDLRRTVTTDVAFSPEESGKPNVKLMASATPERS
RKPKRWALKHQTVKRPNTRGDGAKETDAPDGNIEETRDVTYKGREKQPAN
GNPPPASEISSNEDDVL*
back to top

spliced messenger RNA

>Ggra203.t1 ID=Ggra203.t1|Name=Ggra203.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00000960_pilon:177935..179178- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCCGGACAGGAAGAGAAGGAACGGAGACGGCGTCACAAGCTAGC
GCCAATTGCGACAGGACCGCACGAAGTCGTGAAGTTCAATGACGAGACCG
TGGTCATCCGGAGAGGTGATGAGGTGGAGCGCGTTTCACGCAACAGGGTA
GTGGGAGCACCACGTTCAGAAGCCGAAGCCCAGCGAGTGGAAACAAAGCG
TGTCAACACGAATGAGCACGTGACACAGCCACCCATGGCGCCGGAGCTTT
CTGATTTGCCTCCCCGTGGCCGATTAATTTCGCCAAAATTGCCACTTGGC
AGAATTGGTATGGAACGTCGTCGTGACGAGTTCGGAAGCGGATTGAAGCC
AAGTGGCACCGCTGTAAGCGATATCATACACTCGAGTTGTCCCGTAACGG
CACGCAGTGCAGGGCACACCGTGGACACACCGCATGTGAGGGGCTCCTCA
GCGGAGGTTACTACACTCACCAAAGTGACATTTGAGATATCCCGCGGGGA
GCCGGACACCGCTATCGTAGGTGATCCTGACAAACGCACGGCGAGCCGCG
AACGTCAGAGCGAAGAAGGCGAATATGCCGCTGTCGGCCCCAGCACCCCG
TCCACGGAACCAGGGGGTACACCGCGTCATGAGACGATAGCCGCTGAGAA
GCAGCAGCAGGACAAGGTTGTCAAGGAAATGGAGAGACCACAGAGGAAGG
TTGTACCGGCGGACCCAACCGCAGAGGGAGCTGTTCAACAAGGAGAGATC
CCCATTGAGAGGGCAGTAACACGCCTCAAAAAAGAGGCACCCCCGCGGGT
GGACCTCAGGCGTACGGTGACGACAGACGTCGCGTTTTCGCCAGAAGAAT
CGGGTAAACCGAATGTGAAATTGATGGCGTCGGCCACCCCGGAACGAAGT
AGAAAACCAAAGAGGTGGGCCCTAAAGCACCAGACGGTGAAGAGACCTAA
CACCCGCGGCGACGGGGCAAAGGAAACCGATGCACCGGATGGAAATATCG
AAGAGACTCGGGATGTCACATACAAGGGACGTGAGAAGCAACCCGCTAAC
GGGAACCCGCCCCCGGCTTCTGAGATATCCAGCAACGAAGACGACGTATT
GTAA
back to top

protein sequence of Ggra203.t1

>Ggra203.t1 ID=Ggra203.t1|Name=Ggra203.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=368bp
MKPGQEEKERRRRHKLAPIATGPHEVVKFNDETVVIRRGDEVERVSRNRV
VGAPRSEAEAQRVETKRVNTNEHVTQPPMAPELSDLPPRGRLISPKLPLG
RIGMERRRDEFGSGLKPSGTAVSDIIHSSCPVTARSAGHTVDTPHVRGSS
AEVTTLTKVTFEISRGEPDTAIVGDPDKRTASRERQSEEGEYAAVGPSTP
STEPGGTPRHETIAAEKQQQDKVVKEMERPQRKVVPADPTAEGAVQQGEI
PIERAVTRLKKEAPPRVDLRRTVTTDVAFSPEESGKPNVKLMASATPERS
RKPKRWALKHQTVKRPNTRGDGAKETDAPDGNIEETRDVTYKGREKQPAN
GNPPPASEISSNEDDVL*
back to top

mRNA from alignment at tig00000960_pilon:177935..179178-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra203.t1 ID=Ggra203.t1|Name=Ggra203.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1244bp|location=Sequence derived from alignment at tig00000960_pilon:177935..179178- (Gracilaria gracilis GNS1m male)
ATGAAGCCCGGACAGGAAGAGAAGGAACGGAGACGGCGTCACAAGCTAGC
GCCAATTGCGACAGGACCGCACGAAGTCGTGAAGTTCAATGACGAGACCG
TGGTCATCCGGAGAGGTGATGAGGTGGAGCGCGTTTCACGCAACAGGGTA
GTGGGAGCACCACGTTCAGAAGCCGAAGCCCAGCGAGTGGAAACAAAGCG
TGTCAACACGAATGAGCACGTGACACAGCCACCCATGGCGCCGGAGCTTT
CTGATTTGCCTCCCCGTGGCCGATTAATTTCGCCAAAATTGCCACTTGGC
AGAATTGGTATGGAACGTCGTCGTGACGAGTTCGGAAGCGGATTGAAGCC
AAGTGGCACCGCTGTAAGCGATATCATACACTCGAGTTGTCCCGTAACGG
CACGCAGTGCAGGGCACACCGTGGACACACCGCATGTGAGGGGCTCCTCA
GCGGAGGTTACTACACTCACCAAAGTGACATTTGAGATATCCCGCGGGGA
GCCGGACACCGCTATCGTAGGTGATCCTGACAAACGCACGGCGAGCCGCG
AACGTCAGAGCGAAGAAGGCGAATATGCCGCTGTCGGCCCCAGCACCCCG
TCCACGGAACCAGGGGGTACACCGCGTCATGAGACGATAGCCGCTGAGAA
GCAGCAGCAGGACAAGGTTGTCAAGGAAATGGAGAGACCACAGAGGAAGG
TTGTACCGGCGGACCCAACCGCAGAGGGAGCTGTTCAACAAGGAGAGATC
CCCATTGAGAGGGCAGTAACACGCCTCAAAAAAGAGGCACCCCCGCGGGT
GGACCTCAGGCGTACGGTGACGACAGACGTCGCGTTTTCGCCAGAAGAAT
CGGGTAAACCGAATGTGAAATTGATGGCGTCGGCCACCCCGGAACGAAGT
AGAAAACCAAAGAGGTGGGCCCTAAAGCACCAGACGGTGAAGAGACCTAA
CACCCGCGGCGACGGGGCAAAGGAAACCGATGCACCGGATGGAAATATCG
AAGAGACTCGGGATGTCACATACAAGGGACGTGAGAAGCAACCCGCTAAC
GGGAACCCGCCCCCGGCTTCTGAGATATCCAGCAACGAAGACGAGTACGT
CATTGAACGCATTGTAGCTCACGGTAGAGATGAGAATAACGACAGCCTAC
TGTTCAGAGTCCGTTGGTATGGATACGCTCCCAAAGACGATACATGGGAG
CCCATACGTAACCTGCCACGATCTCACGTGTTAGCGTATTGTAA
back to top

Coding sequence (CDS) from alignment at tig00000960_pilon:177935..179178-

>Ggra203.t1 ID=Ggra203.t1|Name=Ggra203.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1104bp|location=Sequence derived from alignment at tig00000960_pilon:177935..179178- (Gracilaria gracilis GNS1m male)
ATGAAGCCCGGACAGGAAGAGAAGGAACGGAGACGGCGTCACAAGCTAGC
GCCAATTGCGACAGGACCGCACGAAGTCGTGAAGTTCAATGACGAGACCG
TGGTCATCCGGAGAGGTGATGAGGTGGAGCGCGTTTCACGCAACAGGGTA
GTGGGAGCACCACGTTCAGAAGCCGAAGCCCAGCGAGTGGAAACAAAGCG
TGTCAACACGAATGAGCACGTGACACAGCCACCCATGGCGCCGGAGCTTT
CTGATTTGCCTCCCCGTGGCCGATTAATTTCGCCAAAATTGCCACTTGGC
AGAATTGGTATGGAACGTCGTCGTGACGAGTTCGGAAGCGGATTGAAGCC
AAGTGGCACCGCTGTAAGCGATATCATACACTCGAGTTGTCCCGTAACGG
CACGCAGTGCAGGGCACACCGTGGACACACCGCATGTGAGGGGCTCCTCA
GCGGAGGTTACTACACTCACCAAAGTGACATTTGAGATATCCCGCGGGGA
GCCGGACACCGCTATCGTAGGTGATCCTGACAAACGCACGGCGAGCCGCG
AACGTCAGAGCGAAGAAGGCGAATATGCCGCTGTCGGCCCCAGCACCCCG
TCCACGGAACCAGGGGGTACACCGCGTCATGAGACGATAGCCGCTGAGAA
GCAGCAGCAGGACAAGGTTGTCAAGGAAATGGAGAGACCACAGAGGAAGG
TTGTACCGGCGGACCCAACCGCAGAGGGAGCTGTTCAACAAGGAGAGATC
CCCATTGAGAGGGCAGTAACACGCCTCAAAAAAGAGGCACCCCCGCGGGT
GGACCTCAGGCGTACGGTGACGACAGACGTCGCGTTTTCGCCAGAAGAAT
CGGGTAAACCGAATGTGAAATTGATGGCGTCGGCCACCCCGGAACGAAGT
AGAAAACCAAAGAGGTGGGCCCTAAAGCACCAGACGGTGAAGAGACCTAA
CACCCGCGGCGACGGGGCAAAGGAAACCGATGCACCGGATGGAAATATCG
AAGAGACTCGGGATGTCACATACAAGGGACGTGAGAAGCAACCCGCTAAC
GGGAACCCGCCCCCGGCTTCTGAGATATCCAGCAACGAAGACGACGTATT
GTAA
back to top