Ggra2026.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2026.t1
Unique Name	Ggra2026.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	551

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000030_pilon	contig	tig00000030_pilon:20644..22370 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2026	Ggra2026	Gracilaria gracilis GNS1m male	gene	tig00000030_pilon 20644..22370 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2026.t1	Ggra2026.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000030_pilon 20644..22370 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2026.t1.start1	Ggra2026.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000030_pilon 20644..20646 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2026.t1.CDS1	Ggra2026.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000030_pilon 20644..21300 +
Ggra2026.t1.CDS2	Ggra2026.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000030_pilon 21375..22370 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2026.t1.exon1	Ggra2026.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000030_pilon 20644..21300 +
Ggra2026.t1.exon2	Ggra2026.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000030_pilon 21375..22370 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2026.t1.intron1	Ggra2026.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000030_pilon 21301..21374 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2026.t1.stop1	Ggra2026.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000030_pilon 22368..22370 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000030_pilon:20644..22370+
coding sequence from alignment at tig00000030_pilon:20644..22370+

mRNA sequence

>Ggra2026.t1 ID=Ggra2026.t1|Name=Ggra2026.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=551bp
MSPTLPPLPPTPTSNSRAPFPTASKPSVPTPSPLRAPAMSPTSPPIASIS
PAPRSPSSSYASSASFPPFSPPLSAAGFPFVSESTHDPNFEQMSVDHILQ
DLLAEKKVTPRLVTECSEQQLLLIFPLILHTIQIHPPTEPSPLLRPLLIR
LCSSRRLKLRFLLLRRHPSFSTLQSKLSFVSRGYNRWCFAPGCTPSKSHG
SFHKHCNPNDKIFRVPVDMVDLQSEDFFRNVVFEQPRKHKHDFGFQLISH
PFRVHNLPHESSFNGPDEEESSFFSSQSDNTEDYYPDQQLAESATVRVEV
DHTAIELRHLSFEEDVVKHSNMTPLLPRLNLRRGTNMLKIQLCQMLFVFF
NCVWSTPTSRYPDVHSAPICVTFDVIASGVDQGLTRAFCHVQSFFNFRFD
FWQDTRGRDHVIADEFVRSAAGAFTAAYICGINTQHKDTFCVKDGAAFYL
HNFEDIFQGPPQPRIGVPKTMRRCLLDIGVWDDFQTCCMRAFYSLRERYL
EIFSIVSPLFAELCCMDEKSISDHLASKYCFNLKEANARKAANNFRKWLG
*

spliced messenger RNA

>Ggra2026.t1 ID=Ggra2026.t1|Name=Ggra2026.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1653bp|location=Sequence derived from alignment at tig00000030_pilon:20644..22370+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCTACATTACCACCATTGCCGCCCACTCCCACTTCCAACAGTCG
AGCTCCATTCCCAACCGCTTCAAAGCCTTCTGTGCCCACGCCTTCCCCGC
TGAGAGCGCCTGCAATGTCGCCAACTTCGCCTCCCATAGCGTCCATATCC
CCTGCGCCGCGCTCTCCGTCCAGCTCGTACGCTAGTTCAGCTTCATTTCC
ACCATTCTCACCCCCGTTAAGTGCCGCTGGATTCCCATTCGTGTCAGAGT
CAACTCATGATCCAAACTTCGAGCAGATGTCCGTTGACCATATACTTCAA
GACCTTTTGGCAGAAAAGAAGGTTACTCCACGTCTTGTCACCGAATGCTC
CGAACAACAGTTGTTGCTAATATTCCCTCTTATACTACATACTATTCAAA
TTCACCCGCCAACGGAACCTTCCCCACTGTTGCGCCCATTGTTGATAAGG
CTATGCTCGTCCAGGCGACTCAAGCTGCGCTTTCTTCTGCTTAGAAGACA
CCCCTCATTTTCAACACTGCAGTCAAAGCTTTCTTTTGTATCGCGTGGAT
ACAATCGATGGTGTTTCGCCCCCGGCTGTACCCCGTCCAAGTCACATGGC
TCATTTCACAAGCATTGCAACCCGAACGACAAAATCTTTCGTGTGCCTGT
CGATATGGTTGACCTCCAAAGTGAAGATTTTTTCCGGAATGTCGTCTTCG
AACAACCACGGAAGCATAAACATGACTTCGGTTTCCAGTTAATATCTCAT
CCATTTCGCGTACACAACTTACCTCATGAATCTTCCTTCAATGGTCCTGA
CGAGGAAGAATCATCTTTCTTTTCGTCGCAGTCCGATAATACGGAGGACT
ATTATCCTGACCAACAGCTTGCTGAATCCGCCACTGTTCGTGTAGAGGTG
GATCACACAGCAATTGAACTTCGCCATCTATCGTTCGAGGAAGACGTCGT
CAAGCATTCAAACATGACTCCATTGCTACCGCGTCTCAACCTTCGGAGAG
GAACGAATATGCTCAAAATCCAACTCTGTCAAATGCTGTTCGTTTTCTTC
AACTGCGTGTGGTCCACTCCGACTTCAAGGTATCCTGATGTTCACTCTGC
ACCGATATGCGTAACTTTTGACGTAATTGCCTCCGGAGTAGACCAAGGGT
TAACCCGGGCATTCTGCCATGTACAGAGTTTCTTTAATTTTCGTTTTGAC
TTCTGGCAGGACACGCGTGGAAGAGATCACGTCATAGCGGATGAATTCGT
TAGAAGCGCTGCTGGAGCTTTTACCGCTGCCTATATCTGTGGTATTAATA
CTCAACACAAAGATACGTTTTGTGTGAAAGACGGTGCTGCGTTTTACTTG
CATAATTTTGAAGACATATTCCAAGGTCCCCCACAACCAAGAATAGGCGT
TCCGAAGACAATGCGGCGCTGTCTGCTCGACATAGGGGTCTGGGATGATT
TCCAAACCTGCTGTATGAGAGCGTTTTACAGCCTGAGGGAGAGGTACCTT
GAGATATTTTCAATCGTATCGCCATTGTTTGCCGAGCTTTGTTGCATGGA
TGAGAAAAGCATTTCGGACCACTTAGCTTCCAAGTACTGCTTCAATTTAA
AGGAAGCGAATGCTCGCAAAGCGGCCAATAACTTTAGAAAATGGCTTGGA
TAA

protein sequence of Ggra2026.t1

>Ggra2026.t1 ID=Ggra2026.t1|Name=Ggra2026.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=551bp
MSPTLPPLPPTPTSNSRAPFPTASKPSVPTPSPLRAPAMSPTSPPIASIS
PAPRSPSSSYASSASFPPFSPPLSAAGFPFVSESTHDPNFEQMSVDHILQ
DLLAEKKVTPRLVTECSEQQLLLIFPLILHTIQIHPPTEPSPLLRPLLIR
LCSSRRLKLRFLLLRRHPSFSTLQSKLSFVSRGYNRWCFAPGCTPSKSHG
SFHKHCNPNDKIFRVPVDMVDLQSEDFFRNVVFEQPRKHKHDFGFQLISH
PFRVHNLPHESSFNGPDEEESSFFSSQSDNTEDYYPDQQLAESATVRVEV
DHTAIELRHLSFEEDVVKHSNMTPLLPRLNLRRGTNMLKIQLCQMLFVFF
NCVWSTPTSRYPDVHSAPICVTFDVIASGVDQGLTRAFCHVQSFFNFRFD
FWQDTRGRDHVIADEFVRSAAGAFTAAYICGINTQHKDTFCVKDGAAFYL
HNFEDIFQGPPQPRIGVPKTMRRCLLDIGVWDDFQTCCMRAFYSLRERYL
EIFSIVSPLFAELCCMDEKSISDHLASKYCFNLKEANARKAANNFRKWLG
*

mRNA from alignment at tig00000030_pilon:20644..22370+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2026.t1 ID=Ggra2026.t1|Name=Ggra2026.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1727bp|location=Sequence derived from alignment at tig00000030_pilon:20644..22370+ (Gracilaria gracilis GNS1m male)
ATGTCTCCTACATTACCACCATTGCCGCCCACTCCCACTTCCAACAGTCG
AGCTCCATTCCCAACCGCTTCAAAGCCTTCTGTGCCCACGCCTTCCCCGC
TGAGAGCGCCTGCAATGTCGCCAACTTCGCCTCCCATAGCGTCCATATCC
CCTGCGCCGCGCTCTCCGTCCAGCTCGTACGCTAGTTCAGCTTCATTTCC
ACCATTCTCACCCCCGTTAAGTGCCGCTGGATTCCCATTCGTGTCAGAGT
CAACTCATGATCCAAACTTCGAGCAGATGTCCGTTGACCATATACTTCAA
GACCTTTTGGCAGAAAAGAAGGTTACTCCACGTCTTGTCACCGAATGCTC
CGAACAACAGTTGTTGCTAATATTCCCTCTTATACTACATACTATTCAAA
TTCACCCGCCAACGGAACCTTCCCCACTGTTGCGCCCATTGTTGATAAGG
CTATGCTCGTCCAGGCGACTCAAGCTGCGCTTTCTTCTGCTTAGAAGACA
CCCCTCATTTTCAACACTGCAGTCAAAGCTTTCTTTTGTATCGCGTGGAT
ACAATCGATGGTGTTTCGCCCCCGGCTGTACCCCGTCCAAGTCACATGGC
TCATTTCACAAGCATTGCAACCCGAACGACAAAATCTTTCGTGTGCCTGT
CGATATGGTATGTTTTCATACATAGATAAATCTTGCTCTTTGTGCTTACT
GACACTGCCATGTTCCATTGTTGTTTTTCAGGTTGACCTCCAAAGTGAAG
ATTTTTTCCGGAATGTCGTCTTCGAACAACCACGGAAGCATAAACATGAC
TTCGGTTTCCAGTTAATATCTCATCCATTTCGCGTACACAACTTACCTCA
TGAATCTTCCTTCAATGGTCCTGACGAGGAAGAATCATCTTTCTTTTCGT
CGCAGTCCGATAATACGGAGGACTATTATCCTGACCAACAGCTTGCTGAA
TCCGCCACTGTTCGTGTAGAGGTGGATCACACAGCAATTGAACTTCGCCA
TCTATCGTTCGAGGAAGACGTCGTCAAGCATTCAAACATGACTCCATTGC
TACCGCGTCTCAACCTTCGGAGAGGAACGAATATGCTCAAAATCCAACTC
TGTCAAATGCTGTTCGTTTTCTTCAACTGCGTGTGGTCCACTCCGACTTC
AAGGTATCCTGATGTTCACTCTGCACCGATATGCGTAACTTTTGACGTAA
TTGCCTCCGGAGTAGACCAAGGGTTAACCCGGGCATTCTGCCATGTACAG
AGTTTCTTTAATTTTCGTTTTGACTTCTGGCAGGACACGCGTGGAAGAGA
TCACGTCATAGCGGATGAATTCGTTAGAAGCGCTGCTGGAGCTTTTACCG
CTGCCTATATCTGTGGTATTAATACTCAACACAAAGATACGTTTTGTGTG
AAAGACGGTGCTGCGTTTTACTTGCATAATTTTGAAGACATATTCCAAGG
TCCCCCACAACCAAGAATAGGCGTTCCGAAGACAATGCGGCGCTGTCTGC
TCGACATAGGGGTCTGGGATGATTTCCAAACCTGCTGTATGAGAGCGTTT
TACAGCCTGAGGGAGAGGTACCTTGAGATATTTTCAATCGTATCGCCATT
GTTTGCCGAGCTTTGTTGCATGGATGAGAAAAGCATTTCGGACCACTTAG
CTTCCAAGTACTGCTTCAATTTAAAGGAAGCGAATGCTCGCAAAGCGGCC
AATAACTTTAGAAAATGGCTTGGATAA

Coding sequence (CDS) from alignment at tig00000030_pilon:20644..22370+

>Ggra2026.t1 ID=Ggra2026.t1|Name=Ggra2026.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1653bp|location=Sequence derived from alignment at tig00000030_pilon:20644..22370+ (Gracilaria gracilis GNS1m male)
ATGTCTCCTACATTACCACCATTGCCGCCCACTCCCACTTCCAACAGTCG
AGCTCCATTCCCAACCGCTTCAAAGCCTTCTGTGCCCACGCCTTCCCCGC
TGAGAGCGCCTGCAATGTCGCCAACTTCGCCTCCCATAGCGTCCATATCC
CCTGCGCCGCGCTCTCCGTCCAGCTCGTACGCTAGTTCAGCTTCATTTCC
ACCATTCTCACCCCCGTTAAGTGCCGCTGGATTCCCATTCGTGTCAGAGT
CAACTCATGATCCAAACTTCGAGCAGATGTCCGTTGACCATATACTTCAA
GACCTTTTGGCAGAAAAGAAGGTTACTCCACGTCTTGTCACCGAATGCTC
CGAACAACAGTTGTTGCTAATATTCCCTCTTATACTACATACTATTCAAA
TTCACCCGCCAACGGAACCTTCCCCACTGTTGCGCCCATTGTTGATAAGG
CTATGCTCGTCCAGGCGACTCAAGCTGCGCTTTCTTCTGCTTAGAAGACA
CCCCTCATTTTCAACACTGCAGTCAAAGCTTTCTTTTGTATCGCGTGGAT
ACAATCGATGGTGTTTCGCCCCCGGCTGTACCCCGTCCAAGTCACATGGC
TCATTTCACAAGCATTGCAACCCGAACGACAAAATCTTTCGTGTGCCTGT
CGATATGGTTGACCTCCAAAGTGAAGATTTTTTCCGGAATGTCGTCTTCG
AACAACCACGGAAGCATAAACATGACTTCGGTTTCCAGTTAATATCTCAT
CCATTTCGCGTACACAACTTACCTCATGAATCTTCCTTCAATGGTCCTGA
CGAGGAAGAATCATCTTTCTTTTCGTCGCAGTCCGATAATACGGAGGACT
ATTATCCTGACCAACAGCTTGCTGAATCCGCCACTGTTCGTGTAGAGGTG
GATCACACAGCAATTGAACTTCGCCATCTATCGTTCGAGGAAGACGTCGT
CAAGCATTCAAACATGACTCCATTGCTACCGCGTCTCAACCTTCGGAGAG
GAACGAATATGCTCAAAATCCAACTCTGTCAAATGCTGTTCGTTTTCTTC
AACTGCGTGTGGTCCACTCCGACTTCAAGGTATCCTGATGTTCACTCTGC
ACCGATATGCGTAACTTTTGACGTAATTGCCTCCGGAGTAGACCAAGGGT
TAACCCGGGCATTCTGCCATGTACAGAGTTTCTTTAATTTTCGTTTTGAC
TTCTGGCAGGACACGCGTGGAAGAGATCACGTCATAGCGGATGAATTCGT
TAGAAGCGCTGCTGGAGCTTTTACCGCTGCCTATATCTGTGGTATTAATA
CTCAACACAAAGATACGTTTTGTGTGAAAGACGGTGCTGCGTTTTACTTG
CATAATTTTGAAGACATATTCCAAGGTCCCCCACAACCAAGAATAGGCGT
TCCGAAGACAATGCGGCGCTGTCTGCTCGACATAGGGGTCTGGGATGATT
TCCAAACCTGCTGTATGAGAGCGTTTTACAGCCTGAGGGAGAGGTACCTT
GAGATATTTTCAATCGTATCGCCATTGTTTGCCGAGCTTTGTTGCATGGA
TGAGAAAAGCATTTCGGACCACTTAGCTTCCAAGTACTGCTTCAATTTAA
AGGAAGCGAATGCTCGCAAAGCGGCCAATAACTTTAGAAAATGGCTTGGA
TAA