Ggra2024.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2024.t1
Unique NameGgra2024.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length148
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000030_piloncontigtig00000030_pilon:18367..18960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMD070CT
PFAMsFKBP_C
Max annot lvl2759|Eukaryota
KEGG koko:K01802
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009534,GO:0009536,GO:0009543,GO:0009570,GO:0009579,GO:0031976,GO:0031977,GO:0031978,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464
Evalue7.1e-39
EggNOG OGsCOG0545@1|root,KOG0552@2759|Eukaryota
EC5.2.1.8
Descriptionhistone peptidyl-prolyl isomerization
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2024Ggra2024Gracilaria gracilis GNS1m malegenetig00000030_pilon 18367..18960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2024.t1Ggra2024.t1Gracilaria gracilis GNS1m malepolypeptidetig00000030_pilon 18367..18960 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2024.t1.start1Ggra2024.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000030_pilon 18367..18369 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2024.t1.CDS1Ggra2024.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000030_pilon 18367..18591 +
Ggra2024.t1.CDS2Ggra2024.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000030_pilon 18742..18960 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2024.t1.exon1Ggra2024.t1.exon1Gracilaria gracilis GNS1m maleexontig00000030_pilon 18367..18591 +
Ggra2024.t1.exon2Ggra2024.t1.exon2Gracilaria gracilis GNS1m maleexontig00000030_pilon 18742..18960 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2024.t1.intron1Ggra2024.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000030_pilon 18592..18741 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2024.t1.stop1Ggra2024.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000030_pilon 18958..18960 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2024.t1 ID=Ggra2024.t1|Name=Ggra2024.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=148bp
MLASAGYLLAATPSEAATSSSIQYSVVKSGAGPSAEVGDLVGIRFKGAYN
GVVFDNLFNESTPYFYRVGSGAILKGLEEAVLKMKVGDVYDITIPGDLAF
GTKGRRASAGKPSIPPNATVLYTLELTTIPGKEEELLESIDAEDIGV*
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spliced messenger RNA

>Ggra2024.t1 ID=Ggra2024.t1|Name=Ggra2024.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=444bp|location=Sequence derived from alignment at tig00000030_pilon:18367..18960+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGCTTCCGCTGGGTACTTGCTAGCAGCCACGCCGTCAGAGGCTGC
CACTTCTTCATCGATACAATACTCTGTCGTTAAGTCTGGAGCAGGGCCTT
CTGCAGAGGTAGGTGATCTTGTTGGAATACGCTTCAAAGGAGCATACAAC
GGTGTGGTCTTTGATAACTTGTTTAATGAGTCAACTCCTTACTTTTATCG
TGTTGGCTCTGGCGCTATCCTAAAGGGTTTGGAAGAGGCAGTTTTGAAGA
TGAAAGTTGGTGATGTGTACGACATAACCATTCCTGGAGATCTAGCGTTT
GGTACAAAAGGCCGTAGAGCCAGTGCTGGAAAGCCGTCAATCCCGCCGAA
CGCAACGGTGTTGTACACTTTAGAACTCACCACTATTCCTGGGAAAGAGG
AGGAATTACTAGAGAGTATTGACGCTGAAGATATAGGGGTATAA
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protein sequence of Ggra2024.t1

>Ggra2024.t1 ID=Ggra2024.t1|Name=Ggra2024.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=148bp
MLASAGYLLAATPSEAATSSSIQYSVVKSGAGPSAEVGDLVGIRFKGAYN
GVVFDNLFNESTPYFYRVGSGAILKGLEEAVLKMKVGDVYDITIPGDLAF
GTKGRRASAGKPSIPPNATVLYTLELTTIPGKEEELLESIDAEDIGV*
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mRNA from alignment at tig00000030_pilon:18367..18960+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2024.t1 ID=Ggra2024.t1|Name=Ggra2024.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00000030_pilon:18367..18960+ (Gracilaria gracilis GNS1m male)
ATGTTGGCTTCCGCTGGGTACTTGCTAGCAGCCACGCCGTCAGAGGCTGC
CACTTCTTCATCGATACAATACTCTGTCGTTAAGTCTGGAGCAGGGCCTT
CTGCAGAGGTAGGTGATCTTGTTGGAATACGCTTCAAAGGAGCATACAAC
GGTGTGGTCTTTGATAACTTGTTTAATGAGTCAACTCCTTACTTTTATCG
TGTTGGCTCTGGCGCTATCCTAAAGGTAAGGTAGTGAAGTTTTTTCTCGA
AAGCTGCGCTCGGTCGGACGCTGACGTTTCACAAGCCTCGAATACATTCC
TATGCGTTGATTTGGCGATGAACGCTTCATCCCTCTTGTTTTGCTTGCCC
GCTAATTTGATACCACCACCAACAGGGTTTGGAAGAGGCAGTTTTGAAGA
TGAAAGTTGGTGATGTGTACGACATAACCATTCCTGGAGATCTAGCGTTT
GGTACAAAAGGCCGTAGAGCCAGTGCTGGAAAGCCGTCAATCCCGCCGAA
CGCAACGGTGTTGTACACTTTAGAACTCACCACTATTCCTGGGAAAGAGG
AGGAATTACTAGAGAGTATTGACGCTGAAGATATAGGGGTATAA
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Coding sequence (CDS) from alignment at tig00000030_pilon:18367..18960+

>Ggra2024.t1 ID=Ggra2024.t1|Name=Ggra2024.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=444bp|location=Sequence derived from alignment at tig00000030_pilon:18367..18960+ (Gracilaria gracilis GNS1m male)
ATGTTGGCTTCCGCTGGGTACTTGCTAGCAGCCACGCCGTCAGAGGCTGC
CACTTCTTCATCGATACAATACTCTGTCGTTAAGTCTGGAGCAGGGCCTT
CTGCAGAGGTAGGTGATCTTGTTGGAATACGCTTCAAAGGAGCATACAAC
GGTGTGGTCTTTGATAACTTGTTTAATGAGTCAACTCCTTACTTTTATCG
TGTTGGCTCTGGCGCTATCCTAAAGGGTTTGGAAGAGGCAGTTTTGAAGA
TGAAAGTTGGTGATGTGTACGACATAACCATTCCTGGAGATCTAGCGTTT
GGTACAAAAGGCCGTAGAGCCAGTGCTGGAAAGCCGTCAATCCCGCCGAA
CGCAACGGTGTTGTACACTTTAGAACTCACCACTATTCCTGGGAAAGAGG
AGGAATTACTAGAGAGTATTGACGCTGAAGATATAGGGGTATAA
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