Ggra2023.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2023.t1
Unique NameGgra2023.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length532
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000030_piloncontigtig00000030_pilon:15218..17143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708783.1
Preferred nameACAD11
PFAMsAPH,Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N,HAD_2,Hydrolase
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00028,RC00052,RC00068,RC00076,RC00095,RC00148,RC00246,RC02748
KEGG koko:K00249,ko:K00695,ko:K11729,ko:K11730,ko:K15501,ko:K19360
KEGG ReactionR00806,R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754
KEGG Pathwayko00071,ko00280,ko00410,ko00500,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00500,map00640,map01100,map01110,map01130,map01200,map01212,map03320
KEGG ModuleM00013,M00036,M00087
GOsGO:0000166,GO:0003674,GO:0003824,GO:0003995,GO:0004466,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005777,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009653,GO:0009888,GO:0009987,GO:0010015,GO:0010053,GO:0010054,GO:0016020,GO:0016042,GO:0016049,GO:0016054,GO:0016491,GO:0016627,GO:0017099,GO:0019395,GO:0019752,GO:0019866,GO:0021700,GO:0022622,GO:0030154,GO:0030258,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032787,GO:0033539,GO:0034440,GO:0036094,GO:0040007,GO:0042579,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0048037,GO:0048364,GO:0048468,GO:0048469,GO:0048588,GO:0048589,GO:0048731,GO:0048764,GO:0048765,GO:0048767,GO:0048856,GO:0048869,GO:0050660,GO:0050662,GO:0055114,GO:0060560,GO:0070013,GO:0070991,GO:0071695,GO:0071704,GO:0072329,GO:0080147,GO:0090558,GO:0090627,GO:0097159,GO:0099402,GO:1901265,GO:1901363,GO:1901575,GO:1905392
Evalue6.81e-96
EggNOG OGsCOG3173@1|root,KOG1469@2759|Eukaryota
EC1.3.8.7,2.4.1.13
Descriptionvery-long-chain-acyl-CoA dehydrogenase activity
COG categoryC
CAZyGT4
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko01009,ko03036,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2023Ggra2023Gracilaria gracilis GNS1m malegenetig00000030_pilon 15218..17143 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2023.t1Ggra2023.t1Gracilaria gracilis GNS1m malepolypeptidetig00000030_pilon 15218..17143 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2023.t1.stop1Ggra2023.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000030_pilon 15218..15220 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2023.t1.CDS1Ggra2023.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000030_pilon 15218..15294 -
Ggra2023.t1.CDS2Ggra2023.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000030_pilon 15378..15578 -
Ggra2023.t1.CDS3Ggra2023.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000030_pilon 15671..15775 -
Ggra2023.t1.CDS4Ggra2023.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000030_pilon 15931..17143 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2023.t1.exon1Ggra2023.t1.exon1Gracilaria gracilis GNS1m maleexontig00000030_pilon 15218..15294 -
Ggra2023.t1.exon2Ggra2023.t1.exon2Gracilaria gracilis GNS1m maleexontig00000030_pilon 15378..15578 -
Ggra2023.t1.exon3Ggra2023.t1.exon3Gracilaria gracilis GNS1m maleexontig00000030_pilon 15671..15775 -
Ggra2023.t1.exon4Ggra2023.t1.exon4Gracilaria gracilis GNS1m maleexontig00000030_pilon 15931..17143 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2023.t1.intron1Ggra2023.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000030_pilon 15295..15377 -
Ggra2023.t1.intron2Ggra2023.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000030_pilon 15579..15670 -
Ggra2023.t1.intron3Ggra2023.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000030_pilon 15776..15930 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2023.t1.start1Ggra2023.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000030_pilon 17141..17143 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2023.t1 ID=Ggra2023.t1|Name=Ggra2023.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=532bp
MVAESLQPKVLGERQRSGLLQWAAAGGVVPLAEQGFRMSSSTITATQFDH
GQSNPTYLITVKDSEQHGRLFKFVIRSQPQGQLLKGAHRIDREFRVLSAL
AFSPVPVPQVYGYCEDSTLLGVPFYAMSYVEGRIFKGVSLTELQSAAERA
EIFRESLRILIALRQLDIDKYGLQGLSSTRTPWIDRQLATWYRQFTASRL
PGVDYADMDLLYRGLVSERSQVSQNDAEKSSEAHLIHGDFRIDNLVFHKS
KPVCLAVLDWELVSIGNPTADLASFLTPYHMPKEASFVPILRSMAFSSPR
PIGIPREEDILAQYLNDTGVERNRILSDLRIYLSFALFKFAAIIYGIQHR
TVQGNAVSTHATTLVKQVHCFVHGGLDMLRMSSNLDLSEALLSSSRSGSP
LAQQKLGGTLSAVEYAPIAEMTGRYLFAAEVFNCSAPDTGNIELLSRFGN
ERQKRKWLIPLLNGDIRSCFAMTEPEVASSDATNLSTRIESRGTDYSITG
RKWWASALDNTDTDVNTRCNSVEATYGLWIR*
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spliced messenger RNA

>Ggra2023.t1 ID=Ggra2023.t1|Name=Ggra2023.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1596bp|location=Sequence derived from alignment at tig00000030_pilon:15218..17143- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCGGAAAGCCTTCAACCTAAGGTCCTTGGTGAGAGACAGCGTTC
TGGTCTACTTCAATGGGCGGCAGCAGGTGGAGTAGTTCCGCTAGCTGAAC
AAGGATTCCGTATGTCCTCGTCCACAATAACGGCCACTCAATTTGATCAT
GGACAATCAAATCCAACATACCTGATAACGGTGAAGGATTCTGAGCAGCA
TGGACGGCTTTTCAAGTTTGTCATCAGATCACAACCACAAGGACAGCTTC
TCAAAGGTGCACATCGCATTGACCGCGAATTCCGTGTTCTGTCCGCGCTA
GCCTTCTCGCCTGTTCCTGTTCCCCAGGTGTACGGGTATTGTGAAGACAG
CACGTTGCTCGGCGTTCCGTTCTATGCCATGAGTTATGTCGAAGGTCGCA
TATTCAAAGGCGTGAGCTTGACCGAGCTTCAATCCGCAGCTGAGAGGGCG
GAGATATTTCGCGAATCATTACGAATTCTGATTGCTCTGAGACAACTTGA
TATTGATAAATATGGTCTTCAGGGACTCAGTTCAACCCGCACCCCATGGA
TTGACAGACAACTTGCGACTTGGTATCGTCAATTCACAGCAAGCAGACTG
CCGGGCGTTGATTACGCAGACATGGACCTGCTGTATCGGGGACTAGTGTC
GGAACGAAGTCAAGTATCTCAGAATGATGCGGAGAAAAGCTCTGAAGCTC
ATTTAATACATGGCGACTTTCGCATAGATAACTTGGTCTTTCACAAGTCA
AAGCCAGTATGCCTAGCTGTATTAGACTGGGAACTTGTTTCAATCGGAAA
CCCTACAGCCGACTTGGCATCATTTCTAACTCCATATCACATGCCAAAAG
AAGCTTCTTTCGTTCCAATATTGCGCTCAATGGCGTTTTCCTCACCGCGG
CCGATAGGGATCCCAAGAGAAGAGGACATTCTTGCACAGTATTTGAACGA
CACCGGAGTCGAAAGGAATAGGATTCTCTCGGACTTGAGAATCTATCTTT
CATTTGCTTTGTTTAAGTTTGCTGCAATCATCTATGGAATACAGCATCGC
ACTGTCCAAGGAAACGCAGTTTCCACACATGCGACTACTCTTGTGAAGCA
AGTGCATTGCTTCGTTCATGGTGGATTAGATATGTTGAGGATGAGTTCAA
ACCTCGATCTAAGCGAAGCGTTGCTATCGTCATCGAGAAGCGGGTCCCCT
CTTGCTCAACAAAAGCTTGGAGGGACATTATCTGCGGTTGAGTATGCGCC
AATTGCCGAGATGACTGGAAGATACCTATTTGCCGCTGAGGTGTTTAACT
GCTCGGCGCCGGACACAGGTAACATTGAACTTCTGTCAAGATTCGGCAAT
GAGAGACAGAAGCGAAAGTGGCTTATTCCCCTCTTGAATGGAGATATTCG
GTCGTGCTTTGCAATGACTGAACCAGAAGTCGCTTCATCGGATGCAACGA
ATCTTTCTACTCGAATCGAGTCTAGAGGGACTGATTATTCTATAACAGGA
CGCAAATGGTGGGCTAGTGCACTCGATAATACTGATACCGATGTCAACAC
CAGGTGTAACAGTGTTGAGGCCACTTATGGTCTTTGGATACGATGA
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protein sequence of Ggra2023.t1

>Ggra2023.t1 ID=Ggra2023.t1|Name=Ggra2023.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=532bp
MVAESLQPKVLGERQRSGLLQWAAAGGVVPLAEQGFRMSSSTITATQFDH
GQSNPTYLITVKDSEQHGRLFKFVIRSQPQGQLLKGAHRIDREFRVLSAL
AFSPVPVPQVYGYCEDSTLLGVPFYAMSYVEGRIFKGVSLTELQSAAERA
EIFRESLRILIALRQLDIDKYGLQGLSSTRTPWIDRQLATWYRQFTASRL
PGVDYADMDLLYRGLVSERSQVSQNDAEKSSEAHLIHGDFRIDNLVFHKS
KPVCLAVLDWELVSIGNPTADLASFLTPYHMPKEASFVPILRSMAFSSPR
PIGIPREEDILAQYLNDTGVERNRILSDLRIYLSFALFKFAAIIYGIQHR
TVQGNAVSTHATTLVKQVHCFVHGGLDMLRMSSNLDLSEALLSSSRSGSP
LAQQKLGGTLSAVEYAPIAEMTGRYLFAAEVFNCSAPDTGNIELLSRFGN
ERQKRKWLIPLLNGDIRSCFAMTEPEVASSDATNLSTRIESRGTDYSITG
RKWWASALDNTDTDVNTRCNSVEATYGLWIR*
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mRNA from alignment at tig00000030_pilon:15218..17143-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2023.t1 ID=Ggra2023.t1|Name=Ggra2023.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1926bp|location=Sequence derived from alignment at tig00000030_pilon:15218..17143- (Gracilaria gracilis GNS1m male)
ATGGTGGCGGAAAGCCTTCAACCTAAGGTCCTTGGTGAGAGACAGCGTTC
TGGTCTACTTCAATGGGCGGCAGCAGGTGGAGTAGTTCCGCTAGCTGAAC
AAGGATTCCGTATGTCCTCGTCCACAATAACGGCCACTCAATTTGATCAT
GGACAATCAAATCCAACATACCTGATAACGGTGAAGGATTCTGAGCAGCA
TGGACGGCTTTTCAAGTTTGTCATCAGATCACAACCACAAGGACAGCTTC
TCAAAGGTGCACATCGCATTGACCGCGAATTCCGTGTTCTGTCCGCGCTA
GCCTTCTCGCCTGTTCCTGTTCCCCAGGTGTACGGGTATTGTGAAGACAG
CACGTTGCTCGGCGTTCCGTTCTATGCCATGAGTTATGTCGAAGGTCGCA
TATTCAAAGGCGTGAGCTTGACCGAGCTTCAATCCGCAGCTGAGAGGGCG
GAGATATTTCGCGAATCATTACGAATTCTGATTGCTCTGAGACAACTTGA
TATTGATAAATATGGTCTTCAGGGACTCAGTTCAACCCGCACCCCATGGA
TTGACAGACAACTTGCGACTTGGTATCGTCAATTCACAGCAAGCAGACTG
CCGGGCGTTGATTACGCAGACATGGACCTGCTGTATCGGGGACTAGTGTC
GGAACGAAGTCAAGTATCTCAGAATGATGCGGAGAAAAGCTCTGAAGCTC
ATTTAATACATGGCGACTTTCGCATAGATAACTTGGTCTTTCACAAGTCA
AAGCCAGTATGCCTAGCTGTATTAGACTGGGAACTTGTTTCAATCGGAAA
CCCTACAGCCGACTTGGCATCATTTCTAACTCCATATCACATGCCAAAAG
AAGCTTCTTTCGTTCCAATATTGCGCTCAATGGCGTTTTCCTCACCGCGG
CCGATAGGGATCCCAAGAGAAGAGGACATTCTTGCACAGTATTTGAACGA
CACCGGAGTCGAAAGGAATAGGATTCTCTCGGACTTGAGAATCTATCTTT
CATTTGCTTTGTTTAAGTTTGCTGCAATCATCTATGGAATACAGCATCGC
ACTGTCCAAGGAAACGCAGTTTCCACACATGCGACTACTCTTGTGAAGCA
AGTGCATTGCTTCGTTCATGGTGGATTAGATATGTTGAGGATGAGTTCAA
ACCTCGATCTAAGCGAAGCGTTGCTATCGTCATCGAGAAGCGGGTCCCCT
CTTGCTCAACAAAGTAATCAGCTTCATAGCTCAAGAAGTTGCACCTCTGG
AAGAAAATTATTTCGCTCATGTTAGATCTTCAAGGCGTTGGGAACCGTGG
GAGCCATTAGAGCCCCCTAAAACAAAAAGCTAAAGATGCGGGATTGTGGA
ATTTCTTCTTGCCGAAAGAGCTTGGAGGGACATTATCTGCGGTTGAGTAT
GCGCCAATTGCCGAGATGACTGGAAGATACCTATTTGCCGCTGAGGTGTT
TAACTGCTCGGCGCCGGACACAGGTTAGTGCTCAAATATATTCCATATTC
AAACATCAGTGTGTTTCTTTCCAAGATGCTGACTAGCTTTATGCTTTTGA
TACGCATTCCGGTAGGTAACATTGAACTTCTGTCAAGATTCGGCAATGAG
AGACAGAAGCGAAAGTGGCTTATTCCCCTCTTGAATGGAGATATTCGGTC
GTGCTTTGCAATGACTGAACCAGAAGTCGCTTCATCGGATGCAACGAATC
TTTCTACTCGAATCGAGTCTAGAGGGACTGATTATTCTATAACAGGACGC
AAATGGTGGGCTAGTGGTGCGATGGACAAGCGGTGCAAGGTCATCCTCCT
CATTGGGAGAGGACCAGAGAGCACACTGCTGCACAACAAACATAAGCAGC
ACTCGATAATACTGATACCGATGTCAACACCAGGTGTAACAGTGTTGAGG
CCACTTATGGTCTTTGGATACGATGA
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Coding sequence (CDS) from alignment at tig00000030_pilon:15218..17143-

>Ggra2023.t1 ID=Ggra2023.t1|Name=Ggra2023.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1596bp|location=Sequence derived from alignment at tig00000030_pilon:15218..17143- (Gracilaria gracilis GNS1m male)
ATGGTGGCGGAAAGCCTTCAACCTAAGGTCCTTGGTGAGAGACAGCGTTC
TGGTCTACTTCAATGGGCGGCAGCAGGTGGAGTAGTTCCGCTAGCTGAAC
AAGGATTCCGTATGTCCTCGTCCACAATAACGGCCACTCAATTTGATCAT
GGACAATCAAATCCAACATACCTGATAACGGTGAAGGATTCTGAGCAGCA
TGGACGGCTTTTCAAGTTTGTCATCAGATCACAACCACAAGGACAGCTTC
TCAAAGGTGCACATCGCATTGACCGCGAATTCCGTGTTCTGTCCGCGCTA
GCCTTCTCGCCTGTTCCTGTTCCCCAGGTGTACGGGTATTGTGAAGACAG
CACGTTGCTCGGCGTTCCGTTCTATGCCATGAGTTATGTCGAAGGTCGCA
TATTCAAAGGCGTGAGCTTGACCGAGCTTCAATCCGCAGCTGAGAGGGCG
GAGATATTTCGCGAATCATTACGAATTCTGATTGCTCTGAGACAACTTGA
TATTGATAAATATGGTCTTCAGGGACTCAGTTCAACCCGCACCCCATGGA
TTGACAGACAACTTGCGACTTGGTATCGTCAATTCACAGCAAGCAGACTG
CCGGGCGTTGATTACGCAGACATGGACCTGCTGTATCGGGGACTAGTGTC
GGAACGAAGTCAAGTATCTCAGAATGATGCGGAGAAAAGCTCTGAAGCTC
ATTTAATACATGGCGACTTTCGCATAGATAACTTGGTCTTTCACAAGTCA
AAGCCAGTATGCCTAGCTGTATTAGACTGGGAACTTGTTTCAATCGGAAA
CCCTACAGCCGACTTGGCATCATTTCTAACTCCATATCACATGCCAAAAG
AAGCTTCTTTCGTTCCAATATTGCGCTCAATGGCGTTTTCCTCACCGCGG
CCGATAGGGATCCCAAGAGAAGAGGACATTCTTGCACAGTATTTGAACGA
CACCGGAGTCGAAAGGAATAGGATTCTCTCGGACTTGAGAATCTATCTTT
CATTTGCTTTGTTTAAGTTTGCTGCAATCATCTATGGAATACAGCATCGC
ACTGTCCAAGGAAACGCAGTTTCCACACATGCGACTACTCTTGTGAAGCA
AGTGCATTGCTTCGTTCATGGTGGATTAGATATGTTGAGGATGAGTTCAA
ACCTCGATCTAAGCGAAGCGTTGCTATCGTCATCGAGAAGCGGGTCCCCT
CTTGCTCAACAAAAGCTTGGAGGGACATTATCTGCGGTTGAGTATGCGCC
AATTGCCGAGATGACTGGAAGATACCTATTTGCCGCTGAGGTGTTTAACT
GCTCGGCGCCGGACACAGGTAACATTGAACTTCTGTCAAGATTCGGCAAT
GAGAGACAGAAGCGAAAGTGGCTTATTCCCCTCTTGAATGGAGATATTCG
GTCGTGCTTTGCAATGACTGAACCAGAAGTCGCTTCATCGGATGCAACGA
ATCTTTCTACTCGAATCGAGTCTAGAGGGACTGATTATTCTATAACAGGA
CGCAAATGGTGGGCTAGTGCACTCGATAATACTGATACCGATGTCAACAC
CAGGTGTAACAGTGTTGAGGCCACTTATGGTCTTTGGATACGATGA
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