Ggra2019.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2019.t2
Unique NameGgra2019.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length147
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000226_piloncontigtig00000226_pilon:31014..31454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703545.1
PFAMsBranch
Max annot lvl2759|Eukaryota
KEGG koko:K00742,ko:K00771,ko:K02836,ko:K14763,ko:K20891
KEGG ReactionR05925,R06189
KEGG Pathwayko00532,ko00534,ko00601,ko01100,map00532,map00534,map00601,map01100
KEGG ModuleM00057
GOsGO:0000139,GO:0000902,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006029,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009826,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0015020,GO:0016020,GO:0016043,GO:0016049,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0022008,GO:0030154,GO:0030166,GO:0030201,GO:0031090,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032989,GO:0034097,GO:0034645,GO:0040007,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048679,GO:0048681,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060284,GO:0060560,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:2000026
Evalue6.34e-18
EggNOG OGsKOG0799@1|root,KOG0799@2759|Eukaryota
EC2.4.1.150,2.4.2.26
Descriptionacetylglucosaminyltransferase activity
COG categoryO
CAZyGT14
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03009,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2019Ggra2019Gracilaria gracilis GNS1m malegenetig00000226_pilon 30850..37911 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2019.t2.stop1Ggra2019.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000226_pilon 31014..31016 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2019.t2.CDS1Ggra2019.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000226_pilon 31014..31454 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2019.t2.exon1Ggra2019.t2.exon1Gracilaria gracilis GNS1m maleexontig00000226_pilon 31014..31454 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2019.t2.start1Ggra2019.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000226_pilon 31452..31454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2019.t2Ggra2019.t2Gracilaria gracilis GNS1m malepolypeptidetig00000226_pilon 31014..31454 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2019.t2 ID=Ggra2019.t2|Name=Ggra2019.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=147bp
MRDAAHHQLLQTHSAHPVRDQLGLHFLQSEAWVILHRSFARFSVRSPFAR
RLLILLSMMKDPEEHFFAMLAWNHPYFNSTLAHHALRGIYWKLNGTRSGQ
HPYYIDQQLPDGSLPFWDPGVLKSRCFFARKFRHPHSALLTASTAS*
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spliced messenger RNA

>Ggra2019.t2 ID=Ggra2019.t2|Name=Ggra2019.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp|location=Sequence derived from alignment at tig00000226_pilon:31014..31454- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGACGCCGCGCATCACCAGCTGCTCCAAACGCACAGCGCCCACCC
CGTGCGCGATCAGCTCGGGCTGCACTTTCTGCAGAGCGAGGCGTGGGTCA
TTCTGCACCGCTCGTTTGCGCGCTTTTCCGTGCGCAGCCCGTTTGCCAGA
AGGCTGCTCATCCTGCTGTCCATGATGAAGGACCCGGAGGAGCACTTCTT
TGCCATGCTGGCGTGGAACCACCCGTACTTCAACTCCACGCTGGCGCACC
ACGCGCTGCGCGGCATTTATTGGAAGCTCAACGGCACCCGAAGCGGACAG
CACCCGTACTACATTGATCAGCAGCTGCCCGACGGCTCGCTGCCGTTTTG
GGACCCCGGCGTGCTCAAGTCCAGGTGCTTCTTTGCGCGCAAGTTTCGCC
ACCCGCACAGCGCGCTGTTGACCGCATCGACCGCTTCATGA
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protein sequence of Ggra2019.t2

>Ggra2019.t2 ID=Ggra2019.t2|Name=Ggra2019.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=147bp
MRDAAHHQLLQTHSAHPVRDQLGLHFLQSEAWVILHRSFARFSVRSPFAR
RLLILLSMMKDPEEHFFAMLAWNHPYFNSTLAHHALRGIYWKLNGTRSGQ
HPYYIDQQLPDGSLPFWDPGVLKSRCFFARKFRHPHSALLTASTAS*
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mRNA from alignment at tig00000226_pilon:31014..31454-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2019.t2 ID=Ggra2019.t2|Name=Ggra2019.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp|location=Sequence derived from alignment at tig00000226_pilon:31014..31454- (Gracilaria gracilis GNS1m male)
ATGCGCGACGCCGCGCATCACCAGCTGCTCCAAACGCACAGCGCCCACCC
CGTGCGCGATCAGCTCGGGCTGCACTTTCTGCAGAGCGAGGCGTGGGTCA
TTCTGCACCGCTCGTTTGCGCGCTTTTCCGTGCGCAGCCCGTTTGCCAGA
AGGCTGCTCATCCTGCTGTCCATGATGAAGGACCCGGAGGAGCACTTCTT
TGCCATGCTGGCGTGGAACCACCCGTACTTCAACTCCACGCTGGCGCACC
ACGCGCTGCGCGGCATTTATTGGAAGCTCAACGGCACCCGAAGCGGACAG
CACCCGTACTACATTGATCAGCAGCTGCCCGACGGCTCGCTGCCGTTTTG
GGACCCCGGCGTGCTCAAGTCCAGGTGCTTCTTTGCGCGCAAGTTTCGCC
ACCCGCACAGCGCGCTGTTGACCGCATCGACCGCTTCATGA
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Coding sequence (CDS) from alignment at tig00000226_pilon:31014..31454-

>Ggra2019.t2 ID=Ggra2019.t2|Name=Ggra2019.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=441bp|location=Sequence derived from alignment at tig00000226_pilon:31014..31454- (Gracilaria gracilis GNS1m male)
ATGCGCGACGCCGCGCATCACCAGCTGCTCCAAACGCACAGCGCCCACCC
CGTGCGCGATCAGCTCGGGCTGCACTTTCTGCAGAGCGAGGCGTGGGTCA
TTCTGCACCGCTCGTTTGCGCGCTTTTCCGTGCGCAGCCCGTTTGCCAGA
AGGCTGCTCATCCTGCTGTCCATGATGAAGGACCCGGAGGAGCACTTCTT
TGCCATGCTGGCGTGGAACCACCCGTACTTCAACTCCACGCTGGCGCACC
ACGCGCTGCGCGGCATTTATTGGAAGCTCAACGGCACCCGAAGCGGACAG
CACCCGTACTACATTGATCAGCAGCTGCCCGACGGCTCGCTGCCGTTTTG
GGACCCCGGCGTGCTCAAGTCCAGGTGCTTCTTTGCGCGCAAGTTTCGCC
ACCCGCACAGCGCGCTGTTGACCGCATCGACCGCTTCATGA
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